RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 ARHGAP12Q8IWW6 846 aa18.65■□□□□ 0.58
CLN3-202ENST00000355477 CHCHD4Q8N4Q1 142 aa18.65■□□□□ 0.58
CLN3-202ENST00000355477 NPWQ8N729 165 aa18.65■□□□□ 0.58
CLN3-202ENST00000355477 RNF214Q8ND24 703 aa18.65■□□□□ 0.58
CLN3-202ENST00000355477 GDAP1L1Q96MZ0 367 aa18.65■□□□□ 0.58
CLN3-202ENST00000355477 KLHL32Q96NJ5 620 aa18.65■□□□□ 0.58
CLN3-202ENST00000355477 NCAPGQ9BPX3 1015 aa18.65■□□□□ 0.58
CLN3-202ENST00000355477 NUP85Q9BW27 656 aa18.65■□□□□ 0.58
CLN3-202ENST00000355477 GGT7Q9UJ14 662 aa18.65■□□□□ 0.58
CLN3-202ENST00000355477 MFHAS1Q9Y4C4 1052 aa18.65■□□□□ 0.58
CLN3-202ENST00000355477 GOLGA4Q13439 2230 aaKnown RBP18.65■□□□□ 0.58
CLN3-202ENST00000355477 SPINT1O43278 529 aa18.64■□□□□ 0.57
CLN3-202ENST00000355477 AP1G1O43747 822 aa18.64■□□□□ 0.57
CLN3-202ENST00000355477 IGSF6O95976 241 aa18.64■□□□□ 0.57
CLN3-202ENST00000355477 DPYSQ14117 519 aa18.64■□□□□ 0.57
CLN3-202ENST00000355477 PIGHQ14442 188 aaPredicted RBP18.64■□□□□ 0.57
CLN3-202ENST00000355477 SPECC1LQ69YQ0 1117 aa18.64■□□□□ 0.57
CLN3-202ENST00000355477 GDPD4Q6W3E5 623 aa18.64■□□□□ 0.57
CLN3-202ENST00000355477 ARHGAP36Q6ZRI8 547 aa18.64■□□□□ 0.57
CLN3-202ENST00000355477 TP53INP2Q8IXH6 220 aa18.64■□□□□ 0.57
CLN3-202ENST00000355477 FEM1CQ96JP0 617 aa18.64■□□□□ 0.57
CLN3-202ENST00000355477 EXOC2Q96KP1 924 aa18.64■□□□□ 0.57
CLN3-202ENST00000355477 ZWILCHQ9H900 591 aa18.64■□□□□ 0.57
CLN3-202ENST00000355477 ERVMER34-1Q9H9K5 563 aa18.64■□□□□ 0.57
CLN3-202ENST00000355477 TOR4AQ9NXH8 423 aa18.64■□□□□ 0.57
CLN3-202ENST00000355477 DONSONQ9NYP3 566 aa18.64■□□□□ 0.57
CLN3-202ENST00000355477 UBA2Q9UBT2 640 aaPredicted RBP18.64■□□□□ 0.57
CLN3-202ENST00000355477 ANAPC7Q9UJX3 599 aa18.64■□□□□ 0.57
CLN3-202ENST00000355477 ITM2BQ9Y287 266 aa18.64■□□□□ 0.57
CLN3-202ENST00000355477 COL5A1P20908 1838 aaPredicted RBP18.63■□□□□ 0.57
CLN3-202ENST00000355477 ARHGAP42A6NI28 874 aa18.63■□□□□ 0.57
CLN3-202ENST00000355477 CBFA2T2O43439 604 aa18.63■□□□□ 0.57
CLN3-202ENST00000355477 PAK4O96013 591 aaPredicted RBP18.63■□□□□ 0.57
CLN3-202ENST00000355477 ATXN1LP0C7T5 689 aaKnown RBP18.63■□□□□ 0.57
CLN3-202ENST00000355477 RARAP10276 462 aa18.63■□□□□ 0.57
CLN3-202ENST00000355477 GRK6P43250 576 aa18.63■□□□□ 0.57
CLN3-202ENST00000355477 CLDN2P57739 230 aa18.63■□□□□ 0.57
CLN3-202ENST00000355477 RPS21P63220 83 aaKnown RBP18.63■□□□□ 0.57
CLN3-202ENST00000355477 OVGP1Q12889 678 aa18.63■□□□□ 0.57
CLN3-202ENST00000355477 BNIP3Q12983 259 aa18.63■□□□□ 0.57
CLN3-202ENST00000355477 MAPK8IP2Q13387 824 aaPredicted RBP18.63■□□□□ 0.57
CLN3-202ENST00000355477 DPYSL2Q16555 572 aa18.63■□□□□ 0.57
CLN3-202ENST00000355477 BOLA3Q53S33 107 aa18.63■□□□□ 0.57
CLN3-202ENST00000355477 LRRC73Q5JTD7 316 aa18.63■□□□□ 0.57
CLN3-202ENST00000355477 RAB44Q7Z6P3 723 aaPredicted RBP18.63■□□□□ 0.57
CLN3-202ENST00000355477 NIPA2Q8N8Q9 360 aa18.63■□□□□ 0.57
CLN3-202ENST00000355477 SAP25Q8TEE9 199 aa18.63■□□□□ 0.57
CLN3-202ENST00000355477 HSPH1Q92598 858 aa18.63■□□□□ 0.57
CLN3-202ENST00000355477 KLHDC7BQ96G42 594 aa18.63■□□□□ 0.57
CLN3-202ENST00000355477 DNAJC7Q99615 494 aa18.63■□□□□ 0.57
CLN3-202ENST00000355477 CDC6Q99741 560 aa18.63■□□□□ 0.57
CLN3-202ENST00000355477 OSBPL1AQ9BXW6 950 aa18.63■□□□□ 0.57
CLN3-202ENST00000355477 SLC17A9Q9BYT1 436 aa18.63■□□□□ 0.57
CLN3-202ENST00000355477 ETNK2Q9NVF9 386 aa18.63■□□□□ 0.57
CLN3-202ENST00000355477 IP6K2Q9UHH9 426 aa18.63■□□□□ 0.57
CLN3-202ENST00000355477 KLK13Q9UKR3 277 aa18.63■□□□□ 0.57
CLN3-202ENST00000355477 IGLON5A6NGN9 336 aa18.62■□□□□ 0.57
CLN3-202ENST00000355477 DFFAO00273 331 aa18.62■□□□□ 0.57
CLN3-202ENST00000355477 RAD51BO15315 384 aa18.62■□□□□ 0.57
CLN3-202ENST00000355477 ITIH2P19823 946 aa18.62■□□□□ 0.57
CLN3-202ENST00000355477 HNRNPA2B1P22626 353 aaKnown RBP18.62■□□□□ 0.57
CLN3-202ENST00000355477 AMPD1P23109 780 aa18.62■□□□□ 0.57
CLN3-202ENST00000355477 AKT2P31751 481 aa18.62■□□□□ 0.57
CLN3-202ENST00000355477 RXRGP48443 463 aa18.62■□□□□ 0.57
CLN3-202ENST00000355477 ZNF135P52742 658 aaPredicted RBP18.62■□□□□ 0.57
CLN3-202ENST00000355477 SLC25A11Q02978 314 aaKnown RBP18.62■□□□□ 0.57
CLN3-202ENST00000355477 RAD51Q06609 339 aa18.62■□□□□ 0.57
CLN3-202ENST00000355477 ASTE1Q2TB18 679 aaPredicted RBP18.62■□□□□ 0.57
CLN3-202ENST00000355477 KIAA1161Q6NSJ0 714 aa18.62■□□□□ 0.57
CLN3-202ENST00000355477 GCNT7Q6ZNI0 430 aa18.62■□□□□ 0.57
CLN3-202ENST00000355477 POLNQ7Z5Q5 900 aa18.62■□□□□ 0.57
CLN3-202ENST00000355477 TTC7BQ86TV6 843 aa18.62■□□□□ 0.57
CLN3-202ENST00000355477 CPNE8Q86YQ8 564 aa18.62■□□□□ 0.57
CLN3-202ENST00000355477 VSTM4Q8IW00 320 aa18.62■□□□□ 0.57
CLN3-202ENST00000355477 OR13H1Q8NG92 308 aa18.62■□□□□ 0.57
CLN3-202ENST00000355477 OR8K1Q8NGG5 319 aa18.62■□□□□ 0.57
CLN3-202ENST00000355477 RAB7BQ96AH8 199 aa18.62■□□□□ 0.57
CLN3-202ENST00000355477 PACSIN1Q9BY11 444 aa18.62■□□□□ 0.57
CLN3-202ENST00000355477 CPEB1Q9BZB8 566 aaKnown RBP18.62■□□□□ 0.57
CLN3-202ENST00000355477 CAAP1Q9H8G2 361 aa18.62■□□□□ 0.57
CLN3-202ENST00000355477 STAU2Q9NUL3 570 aaKnown RBP eCLIP18.62■□□□□ 0.57
CLN3-202ENST00000355477 KNTC1P50748 2209 aa18.61■□□□□ 0.57
CLN3-202ENST00000355477 H3BRJ5 948 aa18.61■□□□□ 0.57
CLN3-202ENST00000355477 AREL1O15033 823 aa18.61■□□□□ 0.57
CLN3-202ENST00000355477 TSPAN6O43657 245 aa18.61■□□□□ 0.57
CLN3-202ENST00000355477 MAGEC1O60732 1142 aa18.61■□□□□ 0.57
CLN3-202ENST00000355477 TRIM16O95361 564 aa18.61■□□□□ 0.57
CLN3-202ENST00000355477 PIGNO95427 931 aa18.61■□□□□ 0.57
CLN3-202ENST00000355477 THEGLP0DJG4 465 aa18.61■□□□□ 0.57
CLN3-202ENST00000355477 TIMP2P16035 220 aa18.61■□□□□ 0.57
CLN3-202ENST00000355477 EPHA8P29322 1005 aaPredicted RBP18.61■□□□□ 0.57
CLN3-202ENST00000355477 RGRP47804 291 aa18.61■□□□□ 0.57
CLN3-202ENST00000355477 ARRB1P49407 418 aaPredicted RBP18.61■□□□□ 0.57
CLN3-202ENST00000355477 SLC18A3Q16572 532 aa18.61■□□□□ 0.57
CLN3-202ENST00000355477 KANSL1Q7Z3B3 1105 aa18.61■□□□□ 0.57
CLN3-202ENST00000355477 ABI3BPQ7Z7G0 1075 aa18.61■□□□□ 0.57
CLN3-202ENST00000355477 TSEN2Q8NCE0 465 aaKnown RBP18.61■□□□□ 0.57
CLN3-202ENST00000355477 ADAMTS14Q8WXS8 1223 aa18.61■□□□□ 0.57
CLN3-202ENST00000355477 BMFQ96LC9 184 aa18.61■□□□□ 0.57
CLN3-202ENST00000355477 KLF6Q99612 283 aaPredicted RBP18.61■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms