RNA–Protein interactions for RNA: ENST00000354497.4

RTN3-204, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 1,407 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-204ENST00000354497 TMEM259Q4ZIN3 620 aa11.42□□□□□ -0.58
RTN3-204ENST00000354497 DNAJC21Q5F1R6 531 aaKnown RBP11.42□□□□□ -0.58
RTN3-204ENST00000354497 CBWD3Q5JTY5 395 aa11.42□□□□□ -0.58
RTN3-204ENST00000354497 CBWD5Q5RIA9 395 aa11.42□□□□□ -0.58
RTN3-204ENST00000354497 TPRG1LQ5T0D9 272 aa11.42□□□□□ -0.58
RTN3-204ENST00000354497 KIAA1161Q6NSJ0 714 aa11.42□□□□□ -0.58
RTN3-204ENST00000354497 ZFAND4Q86XD8 727 aa11.42□□□□□ -0.58
RTN3-204ENST00000354497 PHACTR4Q8IZ21 702 aa11.42□□□□□ -0.58
RTN3-204ENST00000354497 TMIEQ8NEW7 156 aa11.42□□□□□ -0.58
RTN3-204ENST00000354497 OR52K2Q8NGK3 314 aa11.42□□□□□ -0.58
RTN3-204ENST00000354497 ZDHHC16Q969W1 377 aa11.42□□□□□ -0.58
RTN3-204ENST00000354497 CCDC74AQ96AQ1 378 aa11.42□□□□□ -0.58
RTN3-204ENST00000354497 MIEF2Q96C03 454 aa11.42□□□□□ -0.58
RTN3-204ENST00000354497 CALR3Q96L12 384 aaKnown RBP11.42□□□□□ -0.58
RTN3-204ENST00000354497 HSFY1Q96LI6 401 aa11.42□□□□□ -0.58
RTN3-204ENST00000354497 SH3GL3Q99963 347 aa11.42□□□□□ -0.58
RTN3-204ENST00000354497 BOCQ9BWV1 1114 aa11.42□□□□□ -0.58
RTN3-204ENST00000354497 ETAA1Q9NY74 926 aa11.42□□□□□ -0.58
RTN3-204ENST00000354497 IL36AQ9UHA7 158 aa11.42□□□□□ -0.58
RTN3-204ENST00000354497 LOXL2Q9Y4K0 774 aa11.42□□□□□ -0.58
RTN3-204ENST00000354497 PRAMEF33A0A0G2JMD5 474 aa11.41□□□□□ -0.58
RTN3-204ENST00000354497 EIF3CLB5ME19 914 aaKnown RBP11.41□□□□□ -0.58
RTN3-204ENST00000354497 SPINT1O43278 529 aa11.41□□□□□ -0.58
RTN3-204ENST00000354497 SART1O43290 800 aaKnown RBP11.41□□□□□ -0.58
RTN3-204ENST00000354497 SNAP91O60641 907 aa11.41□□□□□ -0.58
RTN3-204ENST00000354497 PRAMEF10O60809 474 aa11.41□□□□□ -0.58
RTN3-204ENST00000354497 GCATO75600 419 aa11.41□□□□□ -0.58
RTN3-204ENST00000354497 MT-CO1P00395 513 aa11.41□□□□□ -0.58
RTN3-204ENST00000354497 RPLP0P05388 317 aaKnown RBP11.41□□□□□ -0.58
RTN3-204ENST00000354497 PAEPP09466 180 aa11.41□□□□□ -0.58
RTN3-204ENST00000354497 ITIH1P19827 911 aa11.41□□□□□ -0.58
RTN3-204ENST00000354497 MAGEA8P43361 318 aa11.41□□□□□ -0.58
RTN3-204ENST00000354497 RECQLP46063 649 aaPredicted RBP11.41□□□□□ -0.58
RTN3-204ENST00000354497 IRAK1P51617 712 aa11.41□□□□□ -0.58
RTN3-204ENST00000354497 THOP1P52888 689 aa11.41□□□□□ -0.58
RTN3-204ENST00000354497 MAPK10P53779 464 aa11.41□□□□□ -0.58
RTN3-204ENST00000354497 KRT83P78385 493 aa11.41□□□□□ -0.58
RTN3-204ENST00000354497 CNGA2Q16280 664 aa11.41□□□□□ -0.58
RTN3-204ENST00000354497 FAXCQ5TGI0 409 aa11.41□□□□□ -0.58
RTN3-204ENST00000354497 FBXL22Q6P050 247 aa11.41□□□□□ -0.58
RTN3-204ENST00000354497 SDR16C5Q8N3Y7 309 aa11.41□□□□□ -0.58
RTN3-204ENST00000354497 OR2A12Q8NGT7 310 aa11.41□□□□□ -0.58
RTN3-204ENST00000354497 JPH3Q8WXH2 748 aaPredicted RBP11.41□□□□□ -0.58
RTN3-204ENST00000354497 ALG14Q96F25 216 aa11.41□□□□□ -0.58
RTN3-204ENST00000354497 FEM1CQ96JP0 617 aa11.41□□□□□ -0.58
RTN3-204ENST00000354497 EIF3CQ99613 913 aaKnown RBP11.41□□□□□ -0.58
RTN3-204ENST00000354497 PRMT1Q99873 361 aaKnown RBP11.41□□□□□ -0.58
RTN3-204ENST00000354497 DOCK9Q9BZ29 2069 aa11.41□□□□□ -0.58
RTN3-204ENST00000354497 CPEB1Q9BZB8 566 aaKnown RBP11.41□□□□□ -0.58
RTN3-204ENST00000354497 SLC13A1Q9BZW2 595 aa11.41□□□□□ -0.58
RTN3-204ENST00000354497 GPR27Q9NS67 375 aa11.41□□□□□ -0.58
RTN3-204ENST00000354497 SLTMQ9NWH9 1034 aaKnown RBP eCLIP11.41□□□□□ -0.58
RTN3-204ENST00000354497 LCMT1Q9UIC8 334 aa11.41□□□□□ -0.58
RTN3-204ENST00000354497 VANGL2Q9ULK5 521 aa11.41□□□□□ -0.58
RTN3-204ENST00000354497 MAN2B2Q9Y2E5 1009 aa11.41□□□□□ -0.58
RTN3-204ENST00000354497 BLACEA4D250 179 aa11.4□□□□□ -0.58
RTN3-204ENST00000354497 D6RAR5 112 aa11.4□□□□□ -0.58
RTN3-204ENST00000354497 TMX2-CTNND1H3BSU7 103 aa11.4□□□□□ -0.58
RTN3-204ENST00000354497 NEMP1O14524 444 aa11.4□□□□□ -0.58
RTN3-204ENST00000354497 CETN3O15182 167 aa11.4□□□□□ -0.58
RTN3-204ENST00000354497 LEFTY1O75610 366 aa11.4□□□□□ -0.58
RTN3-204ENST00000354497 RHOCP08134 193 aa11.4□□□□□ -0.58
RTN3-204ENST00000354497 ADRB3P13945 408 aa11.4□□□□□ -0.58
RTN3-204ENST00000354497 WT1P19544 449 aaPredicted RBP11.4□□□□□ -0.58
RTN3-204ENST00000354497 TBXAS1P24557 533 aaPredicted RBP11.4□□□□□ -0.58
RTN3-204ENST00000354497 CD151P48509 253 aa11.4□□□□□ -0.58
RTN3-204ENST00000354497 DNA2P51530 1060 aa11.4□□□□□ -0.58
RTN3-204ENST00000354497 PITX1P78337 314 aaPredicted RBP11.4□□□□□ -0.58
RTN3-204ENST00000354497 CCL7P80098 99 aa11.4□□□□□ -0.58
RTN3-204ENST00000354497 STILQ15468 1287 aa11.4□□□□□ -0.58
RTN3-204ENST00000354497 PDCD2Q16342 344 aaPredicted RBP11.4□□□□□ -0.58
RTN3-204ENST00000354497 LINGO4Q6UY18 593 aa11.4□□□□□ -0.58
RTN3-204ENST00000354497 NYAP1Q6ZVC0 841 aa11.4□□□□□ -0.58
RTN3-204ENST00000354497 UBR7Q8N806 425 aa11.4□□□□□ -0.58
RTN3-204ENST00000354497 KYQ8NBH2 561 aa11.4□□□□□ -0.58
RTN3-204ENST00000354497 ZNF564Q8TBZ8 553 aaPredicted RBP11.4□□□□□ -0.58
RTN3-204ENST00000354497 HTR3CQ8WXA8 447 aa11.4□□□□□ -0.58
RTN3-204ENST00000354497 ZSWIM1Q9BR11 485 aa11.4□□□□□ -0.58
RTN3-204ENST00000354497 FUCA2Q9BTY2 467 aa11.4□□□□□ -0.58
RTN3-204ENST00000354497 LRRC61Q9BV99 259 aa11.4□□□□□ -0.58
RTN3-204ENST00000354497 TRIM62Q9BVG3 475 aa11.4□□□□□ -0.58
RTN3-204ENST00000354497 SRRTQ9BXP5 876 aaKnown RBP11.4□□□□□ -0.58
RTN3-204ENST00000354497 HDAC8Q9BY41 377 aa11.4□□□□□ -0.58
RTN3-204ENST00000354497 POPDC2Q9HBU9 364 aa11.4□□□□□ -0.58
RTN3-204ENST00000354497 DDIT4Q9NX09 232 aa11.4□□□□□ -0.58
RTN3-204ENST00000354497 PYCARDQ9ULZ3 195 aa11.4□□□□□ -0.58
RTN3-204ENST00000354497 BSNQ9UPA5 3926 aa11.39□□□□□ -0.59
RTN3-204ENST00000354497 DOPEY2Q9Y3R5 2298 aa11.39□□□□□ -0.59
RTN3-204ENST00000354497 IGLON5A6NGN9 336 aa11.39□□□□□ -0.59
RTN3-204ENST00000354497 NTN3O00634 580 aaPredicted RBP11.39□□□□□ -0.59
RTN3-204ENST00000354497 YY2O15391 372 aa11.39□□□□□ -0.59
RTN3-204ENST00000354497 SMAD6O43541 496 aaKnown RBP11.39□□□□□ -0.59
RTN3-204ENST00000354497 CELA2BP08218 269 aaPredicted RBP11.39□□□□□ -0.59
RTN3-204ENST00000354497 KCNAB2Q13303 367 aa11.39□□□□□ -0.59
RTN3-204ENST00000354497 SERINC3Q13530 473 aa11.39□□□□□ -0.59
RTN3-204ENST00000354497 AUHQ13825 339 aaKnown RBP11.39□□□□□ -0.59
RTN3-204ENST00000354497 PTK2BQ14289 1009 aa11.39□□□□□ -0.59
RTN3-204ENST00000354497 NCAPHQ15003 741 aa11.39□□□□□ -0.59
RTN3-204ENST00000354497 CCDC183Q5T5S1 534 aa11.39□□□□□ -0.59
RTN3-204ENST00000354497 HIST2H2BCQ6DN03 193 aa11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms