RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 FNTAP49354 379 aa8.49□□□□□ -1.05
HMGB1-203ENST00000341423 CSNK1EP49674 416 aaKnown RBP8.49□□□□□ -1.05
HMGB1-203ENST00000341423 SESN2P58004 480 aaPredicted RBP8.49□□□□□ -1.05
HMGB1-203ENST00000341423 GABREP78334 506 aa8.49□□□□□ -1.05
HMGB1-203ENST00000341423 ADCY2Q08462 1091 aa8.49□□□□□ -1.05
HMGB1-203ENST00000341423 CAPSQ13938 189 aa8.49□□□□□ -1.05
HMGB1-203ENST00000341423 SETDB1Q15047 1291 aa8.49□□□□□ -1.05
HMGB1-203ENST00000341423 CFAP221Q4G0U5 840 aa8.49□□□□□ -1.05
HMGB1-203ENST00000341423 TTMPQ5BVD1 217 aa8.49□□□□□ -1.05
HMGB1-203ENST00000341423 STRADAQ7RTN6 431 aa8.49□□□□□ -1.05
HMGB1-203ENST00000341423 ZNF677Q86XU0 584 aa8.49□□□□□ -1.05
HMGB1-203ENST00000341423 UBE2J2Q8N2K1 259 aa8.49□□□□□ -1.05
HMGB1-203ENST00000341423 MPP5Q8N3R9 675 aa8.49□□□□□ -1.05
HMGB1-203ENST00000341423 ESX1Q8N693 406 aa8.49□□□□□ -1.05
HMGB1-203ENST00000341423 CDYL2Q8N8U2 506 aa8.49□□□□□ -1.05
HMGB1-203ENST00000341423 SYT2Q8N9I0 419 aaPredicted RBP8.49□□□□□ -1.05
HMGB1-203ENST00000341423 TBC1D30Q9Y2I9 924 aa8.49□□□□□ -1.05
HMGB1-203ENST00000341423 CAPN7Q9Y6W3 813 aa8.49□□□□□ -1.05
HMGB1-203ENST00000341423 TTC36A6NLP5 189 aa8.49□□□□□ -1.05
HMGB1-203ENST00000341423 PDHA1P08559 390 aa8.49□□□□□ -1.05
HMGB1-203ENST00000341423 SLC7A1P30825 629 aa8.49□□□□□ -1.05
HMGB1-203ENST00000341423 POLD2P49005 469 aa8.49□□□□□ -1.05
HMGB1-203ENST00000341423 RIN1Q13671 783 aa8.49□□□□□ -1.05
HMGB1-203ENST00000341423 CDKN3Q16667 212 aa8.49□□□□□ -1.05
HMGB1-203ENST00000341423 KIF19Q2TAC6 998 aa8.49□□□□□ -1.05
HMGB1-203ENST00000341423 SH3PXD2AQ5TCZ1 1133 aa8.49□□□□□ -1.05
HMGB1-203ENST00000341423 C9orf57Q5W0N0 161 aa8.49□□□□□ -1.05
HMGB1-203ENST00000341423 ARRDC3Q96B67 414 aa8.49□□□□□ -1.05
HMGB1-203ENST00000341423 IP6K3Q96PC2 410 aa8.49□□□□□ -1.05
HMGB1-203ENST00000341423 NDST4Q9H3R1 872 aa8.49□□□□□ -1.05
HMGB1-203ENST00000341423 R3HDMLQ9H3Y0 253 aa8.49□□□□□ -1.05
HMGB1-203ENST00000341423 SDHAF3Q9NRP4 125 aa8.49□□□□□ -1.05
HMGB1-203ENST00000341423 CISHQ9NSE2 258 aa8.49□□□□□ -1.05
HMGB1-203ENST00000341423 SYBUQ9NX95 663 aa8.49□□□□□ -1.05
HMGB1-203ENST00000341423 A0A1W2PQH9 124 aa8.49□□□□□ -1.05
HMGB1-203ENST00000341423 ZSCAN9O15535 394 aaPredicted RBP8.49□□□□□ -1.05
HMGB1-203ENST00000341423 MATN4O95460 622 aa8.49□□□□□ -1.05
HMGB1-203ENST00000341423 JCHAINP01591 159 aa8.49□□□□□ -1.05
HMGB1-203ENST00000341423 PPP2R1BP30154 601 aa8.49□□□□□ -1.05
HMGB1-203ENST00000341423 DIO3P55073 304 aa8.49□□□□□ -1.05
HMGB1-203ENST00000341423 KCNMA1Q12791 1236 aa8.49□□□□□ -1.05
HMGB1-203ENST00000341423 EIF3IQ13347 325 aaKnown RBP8.49□□□□□ -1.05
HMGB1-203ENST00000341423 DRAP1Q14919 205 aaPredicted RBP8.49□□□□□ -1.05
HMGB1-203ENST00000341423 DHCR24Q15392 516 aa8.49□□□□□ -1.05
HMGB1-203ENST00000341423 CLEC16AQ2KHT3 1053 aa8.49□□□□□ -1.05
HMGB1-203ENST00000341423 C10orf67Q8IYJ2 551 aa8.49□□□□□ -1.05
HMGB1-203ENST00000341423 OR4K17Q8NGC6 315 aa8.49□□□□□ -1.05
HMGB1-203ENST00000341423 IFNKQ9P0W0 207 aa8.49□□□□□ -1.05
HMGB1-203ENST00000341423 PCDHGC3Q9UN70 934 aa8.49□□□□□ -1.05
HMGB1-203ENST00000341423 FAM32AQ9Y421 112 aaKnown RBP8.49□□□□□ -1.05
HMGB1-203ENST00000341423 AKAP8O43823 692 aaKnown RBP8.49□□□□□ -1.05
HMGB1-203ENST00000341423 TNFSF15O95150 251 aa8.49□□□□□ -1.05
HMGB1-203ENST00000341423 GJA5P36382 358 aa8.49□□□□□ -1.05
HMGB1-203ENST00000341423 EIF3BP55884 814 aaKnown RBP8.49□□□□□ -1.05
HMGB1-203ENST00000341423 POU4F1Q01851 419 aa8.49□□□□□ -1.05
HMGB1-203ENST00000341423 DEFB109BQ30KR1 87 aa8.49□□□□□ -1.05
HMGB1-203ENST00000341423 IQCCQ4KMZ1 466 aa8.49□□□□□ -1.05
HMGB1-203ENST00000341423 CATSPEREQ5SY80 951 aa8.49□□□□□ -1.05
HMGB1-203ENST00000341423 GKAP1Q5VSY0 366 aaPredicted RBP8.49□□□□□ -1.05
HMGB1-203ENST00000341423 CAPRIN2Q6IMN6 1127 aaKnown RBP8.49□□□□□ -1.05
HMGB1-203ENST00000341423 BTLAQ7Z6A9 289 aa8.49□□□□□ -1.05
HMGB1-203ENST00000341423 LRRC49Q8IUZ0 686 aa8.49□□□□□ -1.05
HMGB1-203ENST00000341423 CACNA2D3Q8IZS8 1091 aa8.49□□□□□ -1.05
HMGB1-203ENST00000341423 TMC2Q8TDI7 906 aa8.49□□□□□ -1.05
HMGB1-203ENST00000341423 TTC17Q96AE7 1141 aa8.49□□□□□ -1.05
HMGB1-203ENST00000341423 COPS8Q99627 209 aa8.49□□□□□ -1.05
HMGB1-203ENST00000341423 HHATLQ9HCP6 504 aa8.49□□□□□ -1.05
HMGB1-203ENST00000341423 FAF1Q9UNN5 650 aaPredicted RBP8.49□□□□□ -1.05
HMGB1-203ENST00000341423 STON1Q9Y6Q2 735 aa8.49□□□□□ -1.05
HMGB1-203ENST00000341423 ITSN1Q15811 1721 aa8.49□□□□□ -1.05
HMGB1-203ENST00000341423 TRIM43BA6NCK2 446 aa8.48□□□□□ -1.05
HMGB1-203ENST00000341423 USP12O75317 370 aa8.48□□□□□ -1.05
HMGB1-203ENST00000341423 IL33O95760 270 aa8.48□□□□□ -1.05
HMGB1-203ENST00000341423 HNRNPA2B1P22626 353 aaKnown RBP8.48□□□□□ -1.05
HMGB1-203ENST00000341423 SLC5A3P53794 718 aa8.48□□□□□ -1.05
HMGB1-203ENST00000341423 NLRP12P59046 1061 aa8.48□□□□□ -1.05
HMGB1-203ENST00000341423 DCAF12L1Q5VU92 463 aa8.48□□□□□ -1.05
HMGB1-203ENST00000341423 LRRC8EQ6NSJ5 796 aa8.48□□□□□ -1.05
HMGB1-203ENST00000341423 DEFB106AQ8N104 65 aa8.48□□□□□ -1.05
HMGB1-203ENST00000341423 TRIM43Q96BQ3 446 aaPredicted RBP8.48□□□□□ -1.05
HMGB1-203ENST00000341423 KLHL32Q96NJ5 620 aa8.48□□□□□ -1.05
HMGB1-203ENST00000341423 LRMDAQ9H2I8 198 aa8.48□□□□□ -1.05
HMGB1-203ENST00000341423 MRM3Q9HC36 420 aaKnown RBP8.48□□□□□ -1.05
HMGB1-203ENST00000341423 ORC6Q9Y5N6 252 aa8.48□□□□□ -1.05
HMGB1-203ENST00000341423 WASHC1A8K0Z3 465 aa8.48□□□□□ -1.05
HMGB1-203ENST00000341423 C2CD4DB7Z1M9 353 aa8.48□□□□□ -1.05
HMGB1-203ENST00000341423 WASH3PC4AMC7 463 aa8.48□□□□□ -1.05
HMGB1-203ENST00000341423 PIK3CDO00329 1044 aa8.48□□□□□ -1.05
HMGB1-203ENST00000341423 DRD4P21917 467 aa8.48□□□□□ -1.05
HMGB1-203ENST00000341423 ACSM2AQ08AH3 577 aa8.48□□□□□ -1.05
HMGB1-203ENST00000341423 HSPA14Q0VDF9 509 aa8.48□□□□□ -1.05
HMGB1-203ENST00000341423 SGO1Q5FBB7 561 aa8.48□□□□□ -1.05
HMGB1-203ENST00000341423 SPATA1Q5VX52 437 aa8.48□□□□□ -1.05
HMGB1-203ENST00000341423 WASH2PQ6VEQ5 465 aa8.48□□□□□ -1.05
HMGB1-203ENST00000341423 PDCL2Q8N4E4 241 aa8.48□□□□□ -1.05
HMGB1-203ENST00000341423 C7orf57Q8NEG2 295 aa8.48□□□□□ -1.05
HMGB1-203ENST00000341423 AMBRA1Q9C0C7 1298 aa8.48□□□□□ -1.05
HMGB1-203ENST00000341423 GOLGA2P5Q9HBQ8 144 aa8.48□□□□□ -1.05
HMGB1-203ENST00000341423 RIF1Q5UIP0 2472 aaKnown RBP8.48□□□□□ -1.05
HMGB1-203ENST00000341423 A0A1B0GVT2 93 aa8.48□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms