RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 RABGGTBP53611 331 aa8.77□□□□□ -1.01
RTN3-202ENST00000339997 DRG2P55039 364 aaKnown RBP8.77□□□□□ -1.01
RTN3-202ENST00000339997 MTTPP55157 894 aa8.77□□□□□ -1.01
RTN3-202ENST00000339997 CDH15P55291 814 aa8.77□□□□□ -1.01
RTN3-202ENST00000339997 NOMO3P69849 1222 aa8.77□□□□□ -1.01
RTN3-202ENST00000339997 KLF10Q13118 480 aa8.77□□□□□ -1.01
RTN3-202ENST00000339997 CAMK2GQ13555 558 aaPredicted RBP8.77□□□□□ -1.01
RTN3-202ENST00000339997 ZNF460Q14592 562 aa8.77□□□□□ -1.01
RTN3-202ENST00000339997 CCL15Q16663 113 aa8.77□□□□□ -1.01
RTN3-202ENST00000339997 CTXN3Q4LDR2 81 aa8.77□□□□□ -1.01
RTN3-202ENST00000339997 C6orf183Q5T699 404 aa8.77□□□□□ -1.01
RTN3-202ENST00000339997 TMEM198Q66K66 360 aa8.77□□□□□ -1.01
RTN3-202ENST00000339997 ABRAXAS1Q6UWZ7 409 aa8.77□□□□□ -1.01
RTN3-202ENST00000339997 GLT6D1Q7Z4J2 308 aa8.77□□□□□ -1.01
RTN3-202ENST00000339997 SLC4A11Q8NBS3 891 aa8.77□□□□□ -1.01
RTN3-202ENST00000339997 PLGRKTQ9HBL7 147 aa8.77□□□□□ -1.01
RTN3-202ENST00000339997 S100A14Q9HCY8 104 aa8.77□□□□□ -1.01
RTN3-202ENST00000339997 ATP13A1Q9HD20 1204 aa8.77□□□□□ -1.01
RTN3-202ENST00000339997 SLC38A7Q9NVC3 462 aa8.77□□□□□ -1.01
RTN3-202ENST00000339997 ATXN10Q9UBB4 475 aa8.77□□□□□ -1.01
RTN3-202ENST00000339997 FADS3Q9Y5Q0 445 aa8.77□□□□□ -1.01
RTN3-202ENST00000339997 UGT1A9O60656 530 aa8.77□□□□□ -1.01
RTN3-202ENST00000339997 H2AFYO75367 372 aaKnown RBP8.77□□□□□ -1.01
RTN3-202ENST00000339997 CRTAMO95727 393 aa8.77□□□□□ -1.01
RTN3-202ENST00000339997 NCK1P16333 377 aa8.77□□□□□ -1.01
RTN3-202ENST00000339997 EIF4BP23588 611 aaKnown RBP8.77□□□□□ -1.01
RTN3-202ENST00000339997 HNRNPH3P31942 346 aaKnown RBP8.77□□□□□ -1.01
RTN3-202ENST00000339997 VPS26BQ4G0F5 336 aa8.77□□□□□ -1.01
RTN3-202ENST00000339997 EEF1DP3Q658K8 133 aa8.77□□□□□ -1.01
RTN3-202ENST00000339997 APTXQ7Z2E3 356 aaKnown RBP8.77□□□□□ -1.01
RTN3-202ENST00000339997 SLCO6A1Q86UG4 719 aa8.77□□□□□ -1.01
RTN3-202ENST00000339997 CACTIN-AS1Q8N1I8 211 aa8.77□□□□□ -1.01
RTN3-202ENST00000339997 TMEM161BQ8NDZ6 487 aa8.77□□□□□ -1.01
RTN3-202ENST00000339997 OR6K2Q8NGY2 324 aa8.77□□□□□ -1.01
RTN3-202ENST00000339997 GAD1Q99259 594 aa8.77□□□□□ -1.01
RTN3-202ENST00000339997 APOL4Q9BPW4 351 aa8.77□□□□□ -1.01
RTN3-202ENST00000339997 RSPH9Q9H1X1 276 aaPredicted RBP8.77□□□□□ -1.01
RTN3-202ENST00000339997 REEP1Q9H902 201 aa8.77□□□□□ -1.01
RTN3-202ENST00000339997 UGT1A7Q9HAW7 530 aa8.77□□□□□ -1.01
RTN3-202ENST00000339997 UGT1A10Q9HAW8 530 aa8.77□□□□□ -1.01
RTN3-202ENST00000339997 UGT1A8Q9HAW9 530 aa8.77□□□□□ -1.01
RTN3-202ENST00000339997 ARL15Q9NXU5 204 aa8.77□□□□□ -1.01
RTN3-202ENST00000339997 MPP6Q9NZW5 540 aa8.77□□□□□ -1.01
RTN3-202ENST00000339997 VTI1BQ9UEU0 232 aa8.77□□□□□ -1.01
RTN3-202ENST00000339997 DRG1Q9Y295 367 aaKnown RBP8.77□□□□□ -1.01
RTN3-202ENST00000339997 DDX60Q8IY21 1712 aaKnown RBP8.76□□□□□ -1.01
RTN3-202ENST00000339997 A0A0A0MRY4 1105 aa8.76□□□□□ -1.01
RTN3-202ENST00000339997 SMIM31A0A1B0GVY4 71 aa8.76□□□□□ -1.01
RTN3-202ENST00000339997 A0A1W2PQ67 120 aa8.76□□□□□ -1.01
RTN3-202ENST00000339997 YDJCA8MPS7 323 aa8.76□□□□□ -1.01
RTN3-202ENST00000339997 NKRFO15226 690 aaKnown RBP eCLIP8.76□□□□□ -1.01
RTN3-202ENST00000339997 FADS2O95864 444 aaKnown RBP8.76□□□□□ -1.01
RTN3-202ENST00000339997 CST3P01034 146 aaPredicted RBP8.76□□□□□ -1.01
RTN3-202ENST00000339997 KRT6AP02538 564 aa8.76□□□□□ -1.01
RTN3-202ENST00000339997 KRT6BP04259 564 aa8.76□□□□□ -1.01
RTN3-202ENST00000339997 TSPAN19P0C672 248 aa8.76□□□□□ -1.01
RTN3-202ENST00000339997 ABL2P42684 1182 aa8.76□□□□□ -1.01
RTN3-202ENST00000339997 KRT6CP48668 564 aa8.76□□□□□ -1.01
RTN3-202ENST00000339997 MAPKAPK3Q16644 382 aa8.76□□□□□ -1.01
RTN3-202ENST00000339997 WSCD1Q658N2 575 aa8.76□□□□□ -1.01
RTN3-202ENST00000339997 UGT3A1Q6NUS8 523 aa8.76□□□□□ -1.01
RTN3-202ENST00000339997 PIGZQ86VD9 579 aa8.76□□□□□ -1.01
RTN3-202ENST00000339997 GPSM1Q86YR5 675 aa8.76□□□□□ -1.01
RTN3-202ENST00000339997 BRSK2Q8IWQ3 736 aa8.76□□□□□ -1.01
RTN3-202ENST00000339997 ZC3H7AQ8IWR0 971 aaKnown RBP8.76□□□□□ -1.01
RTN3-202ENST00000339997 CBR4Q8N4T8 237 aa8.76□□□□□ -1.01
RTN3-202ENST00000339997 SELENOMQ8WWX9 145 aa8.76□□□□□ -1.01
RTN3-202ENST00000339997 KAT2AQ92830 837 aa8.76□□□□□ -1.01
RTN3-202ENST00000339997 MFSD3Q96ES6 412 aa8.76□□□□□ -1.01
RTN3-202ENST00000339997 GMCL1Q96IK5 515 aa8.76□□□□□ -1.01
RTN3-202ENST00000339997 DMRTB1Q96MA1 342 aa8.76□□□□□ -1.01
RTN3-202ENST00000339997 SPATA13Q96N96 652 aa8.76□□□□□ -1.01
RTN3-202ENST00000339997 FRMD8P1Q9BZ68 369 aaPredicted RBP8.76□□□□□ -1.01
RTN3-202ENST00000339997 PCDHAC1Q9H158 963 aa8.76□□□□□ -1.01
RTN3-202ENST00000339997 CHRAC1Q9NRG0 131 aa8.76□□□□□ -1.01
RTN3-202ENST00000339997 GRIN2DO15399 1336 aa8.76□□□□□ -1.01
RTN3-202ENST00000339997 PXDNLA1KZ92 1463 aa8.76□□□□□ -1.01
RTN3-202ENST00000339997 SIGLEC16A6NMB1 481 aa8.76□□□□□ -1.01
RTN3-202ENST00000339997 MYL12BO14950 172 aa8.76□□□□□ -1.01
RTN3-202ENST00000339997 SHOX2O60902 331 aaPredicted RBP8.76□□□□□ -1.01
RTN3-202ENST00000339997 VIL1P09327 827 aaKnown RBP8.76□□□□□ -1.01
RTN3-202ENST00000339997 CNPP09543 421 aaKnown RBP8.76□□□□□ -1.01
RTN3-202ENST00000339997 ODC1P11926 461 aa8.76□□□□□ -1.01
RTN3-202ENST00000339997 LPIN1Q14693 890 aa8.76□□□□□ -1.01
RTN3-202ENST00000339997 CNSTQ6PJW8 725 aa8.76□□□□□ -1.01
RTN3-202ENST00000339997 KIAA0408Q6ZU52 694 aa8.76□□□□□ -1.01
RTN3-202ENST00000339997 ANKRD49Q8WVL7 239 aa8.76□□□□□ -1.01
RTN3-202ENST00000339997 LPGAT1Q92604 370 aa8.76□□□□□ -1.01
RTN3-202ENST00000339997 VCPIP1Q96JH7 1222 aa8.76□□□□□ -1.01
RTN3-202ENST00000339997 GJD4Q96KN9 370 aaPredicted RBP8.76□□□□□ -1.01
RTN3-202ENST00000339997 TBL1YQ9BQ87 522 aa8.76□□□□□ -1.01
RTN3-202ENST00000339997 UGT2B28Q9BY64 529 aa8.76□□□□□ -1.01
RTN3-202ENST00000339997 PRRG3Q9BZD7 231 aa8.76□□□□□ -1.01
RTN3-202ENST00000339997 CLEC4MQ9H2X3 399 aaPredicted RBP8.76□□□□□ -1.01
RTN3-202ENST00000339997 CLK4Q9HAZ1 481 aaKnown RBP8.76□□□□□ -1.01
RTN3-202ENST00000339997 NWD1Q149M9 1564 aa8.76□□□□□ -1.01
RTN3-202ENST00000339997 FAM220BPB1ANY3 271 aa8.76□□□□□ -1.01
RTN3-202ENST00000339997 TMEM114B3SHH9 223 aa8.76□□□□□ -1.01
RTN3-202ENST00000339997 KPNA5O15131 536 aa8.76□□□□□ -1.01
RTN3-202ENST00000339997 MGRN1O60291 552 aa8.76□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms