RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 C16orf89Q6UX73 402 aa12.06□□□□□ -0.48
USP1-201ENST00000339950 PPTC7Q8NI37 304 aa12.06□□□□□ -0.48
USP1-201ENST00000339950 MTFMTQ96DP5 389 aaKnown RBP12.06□□□□□ -0.48
USP1-201ENST00000339950 HSFY1Q96LI6 401 aa12.06□□□□□ -0.48
USP1-201ENST00000339950 SOX17Q9H6I2 414 aaPredicted RBP12.06□□□□□ -0.48
USP1-201ENST00000339950 CRTAC1Q9NQ79 661 aa12.06□□□□□ -0.48
USP1-201ENST00000339950 RGS18Q9NS28 235 aa12.06□□□□□ -0.48
USP1-201ENST00000339950 MIOSQ9NXC5 875 aa12.06□□□□□ -0.48
USP1-201ENST00000339950 MTMR10Q9NXD2 777 aa12.06□□□□□ -0.48
USP1-201ENST00000339950 SIRPGQ9P1W8 387 aa12.06□□□□□ -0.48
USP1-201ENST00000339950 ZNF112Q9UJU3 913 aa12.06□□□□□ -0.48
USP1-201ENST00000339950 MID2Q9UJV3 735 aa12.06□□□□□ -0.48
USP1-201ENST00000339950 TSC22D4Q9Y3Q8 395 aa12.06□□□□□ -0.48
USP1-201ENST00000339950 NUP214P35658 2090 aaPredicted RBP12.06□□□□□ -0.48
USP1-201ENST00000339950 FKBP6O75344 327 aa12.06□□□□□ -0.48
USP1-201ENST00000339950 GJB3O75712 270 aa12.06□□□□□ -0.48
USP1-201ENST00000339950 NCK1P16333 377 aa12.06□□□□□ -0.48
USP1-201ENST00000339950 KRT72Q14CN4 511 aa12.06□□□□□ -0.48
USP1-201ENST00000339950 NEDD8Q15843 81 aa12.06□□□□□ -0.48
USP1-201ENST00000339950 ANGPTL8Q6UXH0 198 aa12.06□□□□□ -0.48
USP1-201ENST00000339950 ENDOVQ8N8Q3 282 aaKnown RBP12.06□□□□□ -0.48
USP1-201ENST00000339950 NAT9Q9BTE0 207 aa12.06□□□□□ -0.48
USP1-201ENST00000339950 TBCDQ9BTW9 1192 aa12.06□□□□□ -0.48
USP1-201ENST00000339950 UXTQ9UBK9 157 aaPredicted RBP12.06□□□□□ -0.48
USP1-201ENST00000339950 A0A088AWK7 358 aa12.06□□□□□ -0.48
USP1-201ENST00000339950 A0A0G2JLL6 359 aaPredicted RBP12.06□□□□□ -0.48
USP1-201ENST00000339950 ARHGAP10A1A4S6 786 aa12.06□□□□□ -0.48
USP1-201ENST00000339950 CCDC189A1A4V9 331 aa12.06□□□□□ -0.48
USP1-201ENST00000339950 SNX2O60749 519 aa12.06□□□□□ -0.48
USP1-201ENST00000339950 TGDSO95455 350 aa12.06□□□□□ -0.48
USP1-201ENST00000339950 PRKCHP24723 683 aa12.06□□□□□ -0.48
USP1-201ENST00000339950 LRPAP1P30533 357 aa12.06□□□□□ -0.48
USP1-201ENST00000339950 PLCL1Q15111 1095 aa12.06□□□□□ -0.48
USP1-201ENST00000339950 FSCN1Q16658 493 aaKnown RBP12.06□□□□□ -0.48
USP1-201ENST00000339950 VPS26BQ4G0F5 336 aa12.06□□□□□ -0.48
USP1-201ENST00000339950 MARC1Q5VT66 337 aa12.06□□□□□ -0.48
USP1-201ENST00000339950 ZNF534Q76KX8 674 aa12.06□□□□□ -0.48
USP1-201ENST00000339950 CHST15Q7LFX5 561 aaPredicted RBP12.06□□□□□ -0.48
USP1-201ENST00000339950 PRRT2Q7Z6L0 340 aaPredicted RBP12.06□□□□□ -0.48
USP1-201ENST00000339950 OFCC1Q8IZS5 231 aa12.06□□□□□ -0.48
USP1-201ENST00000339950 UBR7Q8N806 425 aa12.06□□□□□ -0.48
USP1-201ENST00000339950 FAM81AQ8TBF8 368 aa12.06□□□□□ -0.48
USP1-201ENST00000339950 KBTBD7Q8WVZ9 684 aa12.06□□□□□ -0.48
USP1-201ENST00000339950 LRTOMTQ8WZ04 291 aa12.06□□□□□ -0.48
USP1-201ENST00000339950 DCUN1D1Q96GG9 259 aa12.06□□□□□ -0.48
USP1-201ENST00000339950 MAML3Q96JK9 1138 aa12.06□□□□□ -0.48
USP1-201ENST00000339950 SMOQ99835 787 aa12.06□□□□□ -0.48
USP1-201ENST00000339950 MORF4L1Q9UBU8 362 aa12.06□□□□□ -0.48
USP1-201ENST00000339950 BCAP29Q9UHQ4 241 aa12.06□□□□□ -0.48
USP1-201ENST00000339950 EMCNQ9ULC0 261 aa12.06□□□□□ -0.48
USP1-201ENST00000339950 LAMA3Q16787 3333 aa12.06□□□□□ -0.48
USP1-201ENST00000339950 NDUFS3O75489 264 aa12.05□□□□□ -0.48
USP1-201ENST00000339950 OR1E1P30953 314 aa12.05□□□□□ -0.48
USP1-201ENST00000339950 ARRB2P32121 409 aa12.05□□□□□ -0.48
USP1-201ENST00000339950 PSME3P61289 254 aa12.05□□□□□ -0.48
USP1-201ENST00000339950 C16orf72Q14CZ0 275 aa12.05□□□□□ -0.48
USP1-201ENST00000339950 FBXW8Q8N3Y1 598 aa12.05□□□□□ -0.48
USP1-201ENST00000339950 PTGR2Q8N8N7 351 aaPredicted RBP12.05□□□□□ -0.48
USP1-201ENST00000339950 MZB1Q8WU39 189 aa12.05□□□□□ -0.48
USP1-201ENST00000339950 KCNA7Q96RP8 456 aa12.05□□□□□ -0.48
USP1-201ENST00000339950 SLC39A8Q9C0K1 460 aa12.05□□□□□ -0.48
USP1-201ENST00000339950 PLK2Q9NYY3 685 aa12.05□□□□□ -0.48
USP1-201ENST00000339950 GJD2Q9UKL4 321 aa12.05□□□□□ -0.48
USP1-201ENST00000339950 GNEQ9Y223 722 aaKnown RBP12.05□□□□□ -0.48
USP1-201ENST00000339950 J3KR12 359 aa12.05□□□□□ -0.48
USP1-201ENST00000339950 DNAJB2P25686 324 aa12.05□□□□□ -0.48
USP1-201ENST00000339950 PNPLA4P41247 253 aa12.05□□□□□ -0.48
USP1-201ENST00000339950 SLC1A2P43004 574 aa12.05□□□□□ -0.48
USP1-201ENST00000339950 LIMK2P53671 638 aa12.05□□□□□ -0.48
USP1-201ENST00000339950 SLC18A1P54219 525 aa12.05□□□□□ -0.48
USP1-201ENST00000339950 PRKAA1Q13131 559 aa12.05□□□□□ -0.48
USP1-201ENST00000339950 SLC5A9Q2M3M2 681 aa12.05□□□□□ -0.48
USP1-201ENST00000339950 PLA2G4EQ3MJ16 856 aa12.05□□□□□ -0.48
USP1-201ENST00000339950 DUSP28Q4G0W2 176 aa12.05□□□□□ -0.48
USP1-201ENST00000339950 CWF19L1Q69YN2 538 aaKnown RBP12.05□□□□□ -0.48
USP1-201ENST00000339950 TAPT1Q6NXT6 567 aa12.05□□□□□ -0.48
USP1-201ENST00000339950 SAPCD2Q86UD0 394 aa12.05□□□□□ -0.48
USP1-201ENST00000339950 UNC93AQ86WB7 457 aa12.05□□□□□ -0.48
USP1-201ENST00000339950 PQLC1Q8N2U9 271 aa12.05□□□□□ -0.48
USP1-201ENST00000339950 SEMA3CQ99985 751 aa12.05□□□□□ -0.48
USP1-201ENST00000339950 EFHD1Q9BUP0 239 aa12.05□□□□□ -0.48
USP1-201ENST00000339950 ING2Q9H160 280 aa12.05□□□□□ -0.48
USP1-201ENST00000339950 HPS4Q9NQG7 708 aa12.05□□□□□ -0.48
USP1-201ENST00000339950 FAM105AQ9NUU6 356 aa12.05□□□□□ -0.48
USP1-201ENST00000339950 CD274Q9NZQ7 290 aa12.05□□□□□ -0.48
USP1-201ENST00000339950 PSMD12O00232 456 aaPredicted RBP12.05□□□□□ -0.48
USP1-201ENST00000339950 PPP6CO00743 305 aa12.05□□□□□ -0.48
USP1-201ENST00000339950 DLX3O60479 287 aa12.05□□□□□ -0.48
USP1-201ENST00000339950 E2F6O75461 281 aa12.05□□□□□ -0.48
USP1-201ENST00000339950 SRP72O76094 671 aaKnown RBP12.05□□□□□ -0.48
USP1-201ENST00000339950 MAP3K10Q02779 954 aa12.05□□□□□ -0.48
USP1-201ENST00000339950 ARCQ7LC44 396 aa12.05□□□□□ -0.48
USP1-201ENST00000339950 CEP97Q8IW35 865 aa12.05□□□□□ -0.48
USP1-201ENST00000339950 OR10Q1Q8NGQ4 319 aa12.05□□□□□ -0.48
USP1-201ENST00000339950 FBXO32Q969P5 355 aa12.05□□□□□ -0.48
USP1-201ENST00000339950 ANKRD27Q96NW4 1050 aa12.05□□□□□ -0.48
USP1-201ENST00000339950 SSU72Q9NP77 194 aaKnown RBP12.05□□□□□ -0.48
USP1-201ENST00000339950 VTA1Q9NP79 307 aa12.05□□□□□ -0.48
USP1-201ENST00000339950 ADAMTS5Q9UNA0 930 aa12.05□□□□□ -0.48
USP1-201ENST00000339950 TRIP11Q15643 1979 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms