RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 RNASEH1O60930 286 aaKnown RBP10.38□□□□□ -0.75
CCDC88A-202ENST00000336838 MAFO75444 373 aaPredicted RBP10.38□□□□□ -0.75
CCDC88A-202ENST00000336838 PTPN3P26045 913 aa10.38□□□□□ -0.75
CCDC88A-202ENST00000336838 CASP5P51878 434 aa10.38□□□□□ -0.75
CCDC88A-202ENST00000336838 RHOAP61586 193 aa10.38□□□□□ -0.75
CCDC88A-202ENST00000336838 FGD2Q7Z6J4 655 aa10.38□□□□□ -0.75
CCDC88A-202ENST00000336838 RELL1Q8IUW5 271 aa10.38□□□□□ -0.75
CCDC88A-202ENST00000336838 RNFT2Q96EX2 444 aa10.38□□□□□ -0.75
CCDC88A-202ENST00000336838 TEKT5Q96M29 485 aa10.38□□□□□ -0.75
CCDC88A-202ENST00000336838 VPS28Q9UK41 221 aa10.38□□□□□ -0.75
CCDC88A-202ENST00000336838 EML1O00423 815 aa10.38□□□□□ -0.75
CCDC88A-202ENST00000336838 DDX3YO15523 660 aaKnown RBP10.38□□□□□ -0.75
CCDC88A-202ENST00000336838 SLC2A4P14672 509 aa10.38□□□□□ -0.75
CCDC88A-202ENST00000336838 OR1E1P30953 314 aa10.38□□□□□ -0.75
CCDC88A-202ENST00000336838 TUBP50607 506 aa10.38□□□□□ -0.75
CCDC88A-202ENST00000336838 ACER1Q8TDN7 264 aa10.38□□□□□ -0.75
CCDC88A-202ENST00000336838 SNX15Q9NRS6 342 aa10.38□□□□□ -0.75
CCDC88A-202ENST00000336838 CCDC189A1A4V9 331 aa10.38□□□□□ -0.75
CCDC88A-202ENST00000336838 GSAPA4D1B5 854 aa10.38□□□□□ -0.75
CCDC88A-202ENST00000336838 SIN3BO75182 1162 aa10.38□□□□□ -0.75
CCDC88A-202ENST00000336838 EMC10Q5UCC4 262 aa10.38□□□□□ -0.75
CCDC88A-202ENST00000336838 PAGE2Q7Z2X7 111 aa10.38□□□□□ -0.75
CCDC88A-202ENST00000336838 HM13Q8TCT9 377 aa10.38□□□□□ -0.75
CCDC88A-202ENST00000336838 NELL1Q92832 810 aa10.38□□□□□ -0.75
CCDC88A-202ENST00000336838 ABHD16BQ9H3Z7 469 aa10.38□□□□□ -0.75
CCDC88A-202ENST00000336838 LACTBL1A8MY62 500 aa10.38□□□□□ -0.75
CCDC88A-202ENST00000336838 SEC24AO95486 1093 aa10.38□□□□□ -0.75
CCDC88A-202ENST00000336838 CDC16Q13042 620 aa10.38□□□□□ -0.75
CCDC88A-202ENST00000336838 USP45Q70EL2 814 aa10.38□□□□□ -0.75
CCDC88A-202ENST00000336838 SCUBE3Q8IX30 993 aa10.38□□□□□ -0.75
CCDC88A-202ENST00000336838 TOP6BLQ8N6T0 577 aa10.38□□□□□ -0.75
CCDC88A-202ENST00000336838 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP10.38□□□□□ -0.756e-11■■■■■ 36.3
CCDC88A-202ENST00000336838 ABT1Q9ULW3 272 aaKnown RBP10.38□□□□□ -0.75
CCDC88A-202ENST00000336838 ANGPT4Q9Y264 503 aa10.38□□□□□ -0.75
CCDC88A-202ENST00000336838 PCDHB5Q9Y5E4 795 aa10.38□□□□□ -0.75
CCDC88A-202ENST00000336838 IGSF6O95976 241 aa10.37□□□□□ -0.75
CCDC88A-202ENST00000336838 SLC26A3P40879 764 aa10.37□□□□□ -0.75
CCDC88A-202ENST00000336838 PLEKHH3Q7Z736 793 aa10.37□□□□□ -0.75
CCDC88A-202ENST00000336838 DDX53Q86TM3 631 aaKnown RBP10.37□□□□□ -0.75
CCDC88A-202ENST00000336838 SLC30A8Q8IWU4 369 aa10.37□□□□□ -0.75
CCDC88A-202ENST00000336838 MRPS31Q92665 395 aaKnown RBP10.37□□□□□ -0.75
CCDC88A-202ENST00000336838 SLC38A2Q96QD8 506 aa10.37□□□□□ -0.75
CCDC88A-202ENST00000336838 ACO2Q99798 780 aaKnown RBP10.37□□□□□ -0.75
CCDC88A-202ENST00000336838 EHD1Q9H4M9 534 aa10.37□□□□□ -0.75
CCDC88A-202ENST00000336838 SPATA31C2B4DYI2 1134 aa10.37□□□□□ -0.75
CCDC88A-202ENST00000336838 TRMUO75648 421 aaKnown RBP10.37□□□□□ -0.75
CCDC88A-202ENST00000336838 KRT36O76013 467 aa10.37□□□□□ -0.75
CCDC88A-202ENST00000336838 LRIG2O94898 1065 aa10.37□□□□□ -0.75
CCDC88A-202ENST00000336838 GPRIN3Q6ZVF9 776 aa10.37□□□□□ -0.75
CCDC88A-202ENST00000336838 C2orf49Q9BVC5 232 aaPredicted RBP10.37□□□□□ -0.75
CCDC88A-202ENST00000336838 TAS2R14Q9NYV8 317 aa10.37□□□□□ -0.75
CCDC88A-202ENST00000336838 E2F8A0AVK6 867 aa10.37□□□□□ -0.75
CCDC88A-202ENST00000336838 CLCN3P51790 818 aa10.37□□□□□ -0.75
CCDC88A-202ENST00000336838 EPHB3P54753 998 aa10.37□□□□□ -0.75
CCDC88A-202ENST00000336838 MAPKAPK3Q16644 382 aa10.37□□□□□ -0.75
CCDC88A-202ENST00000336838 SLC2A14Q8TDB8 520 aa10.37□□□□□ -0.75
CCDC88A-202ENST00000336838 SNRNP27Q8WVK2 155 aaKnown RBP10.37□□□□□ -0.75
CCDC88A-202ENST00000336838 TMEM59LQ9UK28 342 aa10.37□□□□□ -0.75
CCDC88A-202ENST00000336838 ERVK-10P10266 1014 aa10.37□□□□□ -0.75
CCDC88A-202ENST00000336838 VAV1P15498 845 aa10.37□□□□□ -0.75
CCDC88A-202ENST00000336838 ANXA8L1Q5VT79 327 aa10.37□□□□□ -0.75
CCDC88A-202ENST00000336838 RBM44Q6ZP01 1051 aaKnown RBP10.37□□□□□ -0.75
CCDC88A-202ENST00000336838 RTL3Q8N8U3 475 aaKnown RBP10.37□□□□□ -0.75
CCDC88A-202ENST00000336838 ITCHQ96J02 903 aa10.37□□□□□ -0.75
CCDC88A-202ENST00000336838 SEPHS2Q99611 448 aa10.37□□□□□ -0.75
CCDC88A-202ENST00000336838 ACLYP53396 1101 aa10.37□□□□□ -0.75
CCDC88A-202ENST00000336838 IL27RAQ6UWB1 636 aa10.37□□□□□ -0.75
CCDC88A-202ENST00000336838 SPOCK2Q92563 424 aa10.37□□□□□ -0.75
CCDC88A-202ENST00000336838 C1QTNF7Q9BXJ2 289 aa10.37□□□□□ -0.75
CCDC88A-202ENST00000336838 SEC22BO75396 215 aa10.37□□□□□ -0.75
CCDC88A-202ENST00000336838 ADRB2P07550 413 aa10.37□□□□□ -0.75
CCDC88A-202ENST00000336838 EPB42P16452 691 aa10.37□□□□□ -0.75
CCDC88A-202ENST00000336838 CDKN2BP42772 138 aa10.37□□□□□ -0.75
CCDC88A-202ENST00000336838 TUFMP49411 452 aaKnown RBP10.37□□□□□ -0.75
CCDC88A-202ENST00000336838 BCAP31P51572 246 aa10.37□□□□□ -0.75
CCDC88A-202ENST00000336838 OTUD3Q5T2D3 398 aaPredicted RBP10.37□□□□□ -0.75
CCDC88A-202ENST00000336838 RIOX2Q8IUF8 465 aa10.37□□□□□ -0.75
CCDC88A-202ENST00000336838 FNIP2Q9P278 1114 aa10.37□□□□□ -0.75
CCDC88A-202ENST00000336838 CLTBP09497 229 aa10.37□□□□□ -0.75
CCDC88A-202ENST00000336838 YBX3P16989 372 aaKnown RBP eCLIP10.37□□□□□ -0.751e-6■■□□□ 12
CCDC88A-202ENST00000336838 RNASEH2BQ5TBB1 312 aaKnown RBP10.37□□□□□ -0.75
CCDC88A-202ENST00000336838 KCNK18Q7Z418 384 aa10.37□□□□□ -0.75
CCDC88A-202ENST00000336838 TP53INP1Q96A56 240 aa10.37□□□□□ -0.75
CCDC88A-202ENST00000336838 SLC22A3O75751 556 aa10.36□□□□□ -0.75
CCDC88A-202ENST00000336838 LRG1P02750 347 aa10.36□□□□□ -0.75
CCDC88A-202ENST00000336838 PSMB4P28070 264 aa10.36□□□□□ -0.75
CCDC88A-202ENST00000336838 NOMO1Q15155 1222 aa10.36□□□□□ -0.75
CCDC88A-202ENST00000336838 LIN52Q52LA3 116 aa10.36□□□□□ -0.75
CCDC88A-202ENST00000336838 GNASQ5JWF2 1037 aa10.36□□□□□ -0.75
CCDC88A-202ENST00000336838 HIPK1Q86Z02 1210 aa10.36□□□□□ -0.75
CCDC88A-202ENST00000336838 DENND2DQ9H6A0 471 aaPredicted RBP10.36□□□□□ -0.75
CCDC88A-202ENST00000336838 ULK1O75385 1050 aa10.36□□□□□ -0.75
CCDC88A-202ENST00000336838 TSPAN19P0C672 248 aa10.36□□□□□ -0.75
CCDC88A-202ENST00000336838 SCNN1AP37088 669 aa10.36□□□□□ -0.75
CCDC88A-202ENST00000336838 MTM1Q13496 603 aa10.36□□□□□ -0.75
CCDC88A-202ENST00000336838 TRIM40Q6P9F5 258 aa10.36□□□□□ -0.75
CCDC88A-202ENST00000336838 LCLAT1Q6UWP7 414 aa10.36□□□□□ -0.75
CCDC88A-202ENST00000336838 ZFP28Q8NHY6 868 aa10.36□□□□□ -0.75
CCDC88A-202ENST00000336838 SOCS4Q8WXH5 440 aa10.36□□□□□ -0.75
CCDC88A-202ENST00000336838 CLPTM1LQ96KA5 538 aa10.36□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms