RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 TMBIM4Q9HC24 238 aa15.1■□□□□ 0.01
CCDC88C-202ENST00000334448 NOD2Q9HC29 1040 aa15.1■□□□□ 0.01
CCDC88C-202ENST00000334448 SYBUQ9NX95 663 aa15.1■□□□□ 0.01
CCDC88C-202ENST00000334448 MOCS1Q9NZB8 636 aa15.1■□□□□ 0.01
CCDC88C-202ENST00000334448 UBP1Q9NZI7 540 aa15.1■□□□□ 0.01
CCDC88C-202ENST00000334448 PRKAG3Q9UGI9 489 aa15.1■□□□□ 0.01
CCDC88C-202ENST00000334448 LGALS13Q9UHV8 139 aa15.1■□□□□ 0.01
CCDC88C-202ENST00000334448 SLC24A2Q9UI40 661 aa15.1■□□□□ 0.01
CCDC88C-202ENST00000334448 RABGEF1Q9UJ41 708 aa15.1■□□□□ 0.01
CCDC88C-202ENST00000334448 CD207Q9UJ71 328 aa15.1■□□□□ 0.01
CCDC88C-202ENST00000334448 SOX13Q9UN79 622 aa15.1■□□□□ 0.01
CCDC88C-202ENST00000334448 ACTL7AQ9Y615 435 aa15.1■□□□□ 0.01
CCDC88C-202ENST00000334448 SHROOM3Q8TF72 1996 aa15.1■□□□□ 0.01
CCDC88C-202ENST00000334448 DOCK8Q8NF50 2099 aa15.09■□□□□ 0.01
CCDC88C-202ENST00000334448 GOLGA6L10A6NI86 522 aa15.09■□□□□ 0.01
CCDC88C-202ENST00000334448 ANHXE9PGG2 379 aa15.09■□□□□ 0.01
CCDC88C-202ENST00000334448 SOX1O00570 391 aaPredicted RBP15.09■□□□□ 0.01
CCDC88C-202ENST00000334448 CDH16O75309 829 aa15.09■□□□□ 0.01
CCDC88C-202ENST00000334448 ZNF821O75541 412 aaPredicted RBP15.09■□□□□ 0.01
CCDC88C-202ENST00000334448 USP1O94782 785 aa15.09■□□□□ 0.01
CCDC88C-202ENST00000334448 NDST3O95803 873 aa15.09■□□□□ 0.01
CCDC88C-202ENST00000334448 GSRP00390 522 aa15.09■□□□□ 0.01
CCDC88C-202ENST00000334448 MT-CO1P00395 513 aa15.09■□□□□ 0.01
CCDC88C-202ENST00000334448 AGTP01019 485 aa15.09■□□□□ 0.01
CCDC88C-202ENST00000334448 ARSAP15289 507 aa15.09■□□□□ 0.01
CCDC88C-202ENST00000334448 PSMC3P17980 439 aa15.09■□□□□ 0.01
CCDC88C-202ENST00000334448 SSTR1P30872 391 aa15.09■□□□□ 0.01
CCDC88C-202ENST00000334448 RHOAP61586 193 aa15.09■□□□□ 0.01
CCDC88C-202ENST00000334448 CDK18Q07002 472 aa15.09■□□□□ 0.01
CCDC88C-202ENST00000334448 ITKQ08881 620 aa15.09■□□□□ 0.01
CCDC88C-202ENST00000334448 OLIG2Q13516 323 aa15.09■□□□□ 0.01
CCDC88C-202ENST00000334448 EIF4HQ15056 248 aaKnown RBP15.09■□□□□ 0.01
CCDC88C-202ENST00000334448 SLC1A5Q15758 541 aa15.09■□□□□ 0.01
CCDC88C-202ENST00000334448 KRT71Q3SY84 523 aa15.09■□□□□ 0.01
CCDC88C-202ENST00000334448 SPANXN3Q5MJ09 141 aa15.09■□□□□ 0.01
CCDC88C-202ENST00000334448 LINGO4Q6UY18 593 aa15.09■□□□□ 0.01
CCDC88C-202ENST00000334448 KRT222Q8N1A0 295 aa15.09■□□□□ 0.01
CCDC88C-202ENST00000334448 CPA6Q8N4T0 437 aa15.09■□□□□ 0.01
CCDC88C-202ENST00000334448 SH2D3CQ8N5H7 860 aa15.09■□□□□ 0.01
CCDC88C-202ENST00000334448 PCDH20Q8N6Y1 951 aaKnown RBP15.09■□□□□ 0.01
CCDC88C-202ENST00000334448 GOLGA6L1Q8N7Z2 621 aa15.09■□□□□ 0.01
CCDC88C-202ENST00000334448 DNAAF3Q8N9W5 541 aa15.09■□□□□ 0.01
CCDC88C-202ENST00000334448 KDM1BQ8NB78 822 aa15.09■□□□□ 0.01
CCDC88C-202ENST00000334448 PEX13Q92968 403 aa15.09■□□□□ 0.01
CCDC88C-202ENST00000334448 CYTH2Q99418 400 aa15.09■□□□□ 0.01
CCDC88C-202ENST00000334448 GAS2L1Q99501 681 aaPredicted RBP15.09■□□□□ 0.01
CCDC88C-202ENST00000334448 TDRD1Q9BXT4 1180 aaKnown RBP15.09■□□□□ 0.01
CCDC88C-202ENST00000334448 VPS37BQ9H9H4 285 aa15.09■□□□□ 0.01
CCDC88C-202ENST00000334448 SAMD15Q9P1V8 674 aa15.09■□□□□ 0.01
CCDC88C-202ENST00000334448 USP15Q9Y4E8 981 aaPredicted RBP15.09■□□□□ 0.01
CCDC88C-202ENST00000334448 COL4A3Q01955 1670 aa15.09■□□□□ 0.01
CCDC88C-202ENST00000334448 MYO18AQ92614 2054 aaKnown RBP15.08■□□□□ 0.01
CCDC88C-202ENST00000334448 MYO9BQ13459 2157 aa15.08■□□□□ 0.01
CCDC88C-202ENST00000334448 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP15.08■□□□□ 0
CCDC88C-202ENST00000334448 FAM159BA6NKW6 160 aa15.08■□□□□ 0
CCDC88C-202ENST00000334448 HMGB1P1B2RPK0 211 aaPredicted RBP15.08■□□□□ 0
CCDC88C-202ENST00000334448 ARNTLO00327 626 aa15.08■□□□□ 0
CCDC88C-202ENST00000334448 RASGRF2O14827 1237 aa15.08■□□□□ 0
CCDC88C-202ENST00000334448 ATP9BO43861 1147 aa15.08■□□□□ 0
CCDC88C-202ENST00000334448 SOCS5O75159 536 aa15.08■□□□□ 0
CCDC88C-202ENST00000334448 TULP3O75386 442 aa15.08■□□□□ 0
CCDC88C-202ENST00000334448 PAPSS2O95340 614 aaPredicted RBP15.08■□□□□ 0
CCDC88C-202ENST00000334448 POLBP06746 335 aa15.08■□□□□ 0
CCDC88C-202ENST00000334448 SRPRAP08240 638 aaKnown RBP15.08■□□□□ 0
CCDC88C-202ENST00000334448 SRCP12931 536 aa15.08■□□□□ 0
CCDC88C-202ENST00000334448 ALADP13716 330 aa15.08■□□□□ 0
CCDC88C-202ENST00000334448 CA4P22748 312 aa15.08■□□□□ 0
CCDC88C-202ENST00000334448 GBP2P32456 591 aaPredicted RBP15.08■□□□□ 0
CCDC88C-202ENST00000334448 DGKGP49619 791 aa15.08■□□□□ 0
CCDC88C-202ENST00000334448 RPL26P61254 145 aaKnown RBP15.08■□□□□ 0
CCDC88C-202ENST00000334448 FAM193AP78312 1265 aa15.08■□□□□ 0
CCDC88C-202ENST00000334448 ECT2LQ008S8 904 aa15.08■□□□□ 0
CCDC88C-202ENST00000334448 NR1H3Q13133 447 aa15.08■□□□□ 0
CCDC88C-202ENST00000334448 MTM1Q13496 603 aa15.08■□□□□ 0
CCDC88C-202ENST00000334448 NAB1Q13506 487 aa15.08■□□□□ 0
CCDC88C-202ENST00000334448 HTR4Q13639 388 aa15.08■□□□□ 0
CCDC88C-202ENST00000334448 CRYMQ14894 314 aa15.08■□□□□ 0
CCDC88C-202ENST00000334448 PCID2Q5JVF3 399 aa15.08■□□□□ 0
CCDC88C-202ENST00000334448 HP1BP3Q5SSJ5 553 aaPredicted RBP15.08■□□□□ 0
CCDC88C-202ENST00000334448 CERCAMQ5T4B2 595 aa15.08■□□□□ 0
CCDC88C-202ENST00000334448 PRPF38BQ5VTL8 546 aaKnown RBP15.08■□□□□ 0
CCDC88C-202ENST00000334448 MBLAC2Q68D91 279 aa15.08■□□□□ 0
CCDC88C-202ENST00000334448 TRIM68Q6AZZ1 485 aa15.08■□□□□ 0
CCDC88C-202ENST00000334448 C22orf39Q6P5X5 142 aa15.08■□□□□ 0
CCDC88C-202ENST00000334448 PHTF2Q8N3S3 785 aa15.08■□□□□ 0
CCDC88C-202ENST00000334448 FBF1Q8TES7 1133 aa15.08■□□□□ 0
CCDC88C-202ENST00000334448 NSMCE3Q96MG7 304 aa15.08■□□□□ 0
CCDC88C-202ENST00000334448 APOL2Q9BQE5 337 aa15.08■□□□□ 0
CCDC88C-202ENST00000334448 SCUBE2Q9NQ36 999 aa15.08■□□□□ 0
CCDC88C-202ENST00000334448 SLC25A13Q9UJS0 675 aa15.08■□□□□ 0
CCDC88C-202ENST00000334448 RIMKLBQ9ULI2 386 aa15.08■□□□□ 0
CCDC88C-202ENST00000334448 RPL26L1Q9UNX3 145 aaKnown RBP15.08■□□□□ 0
CCDC88C-202ENST00000334448 FCF1Q9Y324 198 aaKnown RBP15.08■□□□□ 0
CCDC88C-202ENST00000334448 MAD1L1Q9Y6D9 718 aa15.08■□□□□ 0
CCDC88C-202ENST00000334448 ZCWPW2A0A1B0GU75 182 aa15.07■□□□□ 0
CCDC88C-202ENST00000334448 EXOC1LA0A1B0GW35 172 aa15.07■□□□□ 0
CCDC88C-202ENST00000334448 SMAD6O43541 496 aaKnown RBP15.07■□□□□ 0
CCDC88C-202ENST00000334448 FZD6O60353 706 aa15.07■□□□□ 0
CCDC88C-202ENST00000334448 IGSF6O95976 241 aa15.07■□□□□ 0
CCDC88C-202ENST00000334448 ADRA1DP25100 572 aa15.07■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms