RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 MEI1Q5TIA1 1274 aa16.1■□□□□ 0.17
CCDC28A-201ENST00000332797 NCEH1Q6PIU2 408 aa16.1■□□□□ 0.17
CCDC28A-201ENST00000332797 B4GALNT4Q76KP1 1039 aa16.1■□□□□ 0.17
CCDC28A-201ENST00000332797 ERN2Q76MJ5 926 aaKnown RBP16.1■□□□□ 0.17
CCDC28A-201ENST00000332797 BZW1Q7L1Q6 419 aaKnown RBP16.1■□□□□ 0.17
CCDC28A-201ENST00000332797 PARS2Q7L3T8 475 aaKnown RBP16.1■□□□□ 0.17
CCDC28A-201ENST00000332797 CYP2U1Q7Z449 544 aa16.1■□□□□ 0.17
CCDC28A-201ENST00000332797 TEX26Q8N6G2 289 aa16.1■□□□□ 0.17
CCDC28A-201ENST00000332797 SNX19Q92543 992 aa16.1■□□□□ 0.17
CCDC28A-201ENST00000332797 MAML1Q92585 1016 aa16.1■□□□□ 0.17
CCDC28A-201ENST00000332797 P3H4Q92791 437 aa16.1■□□□□ 0.17
CCDC28A-201ENST00000332797 FOXJ1Q92949 421 aa16.1■□□□□ 0.17
CCDC28A-201ENST00000332797 VOPP1Q96AW1 172 aa16.1■□□□□ 0.17
CCDC28A-201ENST00000332797 ZNF419Q96HQ0 510 aaPredicted RBP16.1■□□□□ 0.17
CCDC28A-201ENST00000332797 CPEB1Q9BZB8 566 aaKnown RBP16.1■□□□□ 0.17
CCDC28A-201ENST00000332797 ARRDC1-AS1Q9H2J1 176 aa16.1■□□□□ 0.17
CCDC28A-201ENST00000332797 ATXN2Q99700 1313 aaKnown RBP16.1■□□□□ 0.17
CCDC28A-201ENST00000332797 ABCA7Q8IZY2 2146 aa16.09■□□□□ 0.17
CCDC28A-201ENST00000332797 ZFHX2Q9C0A1 2572 aaPredicted RBP16.09■□□□□ 0.17
CCDC28A-201ENST00000332797 CEP192Q8TEP8 1941 aa16.09■□□□□ 0.17
CCDC28A-201ENST00000332797 TTC24A2A3L6 582 aaPredicted RBP16.09■□□□□ 0.17
CCDC28A-201ENST00000332797 C16orf96A6NNT2 1141 aa16.09■□□□□ 0.17
CCDC28A-201ENST00000332797 KCNK1O00180 336 aa16.09■□□□□ 0.17
CCDC28A-201ENST00000332797 SLC7A4O43246 635 aa16.09■□□□□ 0.17
CCDC28A-201ENST00000332797 PLRG1O43660 514 aaKnown RBP16.09■□□□□ 0.17
CCDC28A-201ENST00000332797 CCNB1P14635 433 aa16.09■□□□□ 0.17
CCDC28A-201ENST00000332797 NEK3P51956 506 aa16.09■□□□□ 0.17
CCDC28A-201ENST00000332797 ITKQ08881 620 aa16.09■□□□□ 0.17
CCDC28A-201ENST00000332797 NSUN2Q08J23 767 aaKnown RBP eCLIP16.09■□□□□ 0.17
CCDC28A-201ENST00000332797 CCDC15Q0P6D6 951 aa16.09■□□□□ 0.17
CCDC28A-201ENST00000332797 GRM3Q14832 879 aa16.09■□□□□ 0.17
CCDC28A-201ENST00000332797 RPS6KA1Q15418 735 aa16.09■□□□□ 0.17
CCDC28A-201ENST00000332797 DCAF12L1Q5VU92 463 aa16.09■□□□□ 0.17
CCDC28A-201ENST00000332797 FBXL19Q6PCT2 694 aa16.09■□□□□ 0.17
CCDC28A-201ENST00000332797 REXO1L1PQ8IX06 675 aa16.09■□□□□ 0.17
CCDC28A-201ENST00000332797 CADM4Q8NFZ8 388 aa16.09■□□□□ 0.17
CCDC28A-201ENST00000332797 OR2T34Q8NGX1 318 aa16.09■□□□□ 0.17
CCDC28A-201ENST00000332797 RUBCNQ92622 972 aa16.09■□□□□ 0.17
CCDC28A-201ENST00000332797 FATE1Q969F0 183 aa16.09■□□□□ 0.17
CCDC28A-201ENST00000332797 FAM131CQ96AQ9 280 aa16.09■□□□□ 0.17
CCDC28A-201ENST00000332797 MGME1Q9BQP7 344 aa16.09■□□□□ 0.17
CCDC28A-201ENST00000332797 HDAC8Q9BY41 377 aa16.09■□□□□ 0.17
CCDC28A-201ENST00000332797 ATP13A3Q9H7F0 1226 aa16.09■□□□□ 0.17
CCDC28A-201ENST00000332797 SCUBE2Q9NQ36 999 aa16.09■□□□□ 0.17
CCDC28A-201ENST00000332797 TRMT1Q9NXH9 659 aaKnown RBP16.09■□□□□ 0.17
CCDC28A-201ENST00000332797 SEPT10Q9P0V9 454 aa16.09■□□□□ 0.17
CCDC28A-201ENST00000332797 EFR3BQ9Y2G0 817 aa16.09■□□□□ 0.17
CCDC28A-201ENST00000332797 TTLL3Q9Y4R7 772 aa16.09■□□□□ 0.17
CCDC28A-201ENST00000332797 APOC4-APOC2K7ER74 178 aa16.08■□□□□ 0.16
CCDC28A-201ENST00000332797 FSBPO95073 299 aa16.08■□□□□ 0.16
CCDC28A-201ENST00000332797 APOC2P02655 101 aa16.08■□□□□ 0.16
CCDC28A-201ENST00000332797 ADRB3P13945 408 aa16.08■□□□□ 0.16
CCDC28A-201ENST00000332797 ITPKAP23677 461 aa16.08■□□□□ 0.16
CCDC28A-201ENST00000332797 MAPK8P45983 427 aa16.08■□□□□ 0.16
CCDC28A-201ENST00000332797 AP1S1P61966 158 aa16.08■□□□□ 0.16
CCDC28A-201ENST00000332797 CCDC6Q16204 474 aa16.08■□□□□ 0.16
CCDC28A-201ENST00000332797 SYCP2LQ5T4T6 812 aa16.08■□□□□ 0.16
CCDC28A-201ENST00000332797 CFAP58Q5T655 872 aa16.08■□□□□ 0.16
CCDC28A-201ENST00000332797 SEL1L2Q5TEA6 688 aa16.08■□□□□ 0.16
CCDC28A-201ENST00000332797 ZC3H18Q86VM9 953 aaKnown RBP16.08■□□□□ 0.16
CCDC28A-201ENST00000332797 CAMK1DQ8IU85 385 aa16.08■□□□□ 0.16
CCDC28A-201ENST00000332797 RGL4Q8IZJ4 473 aa16.08■□□□□ 0.16
CCDC28A-201ENST00000332797 DCLK2Q8N568 766 aa16.08■□□□□ 0.16
CCDC28A-201ENST00000332797 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP16.08■□□□□ 0.16
CCDC28A-201ENST00000332797 TFB1MQ8WVM0 346 aaKnown RBP16.08■□□□□ 0.16
CCDC28A-201ENST00000332797 UBE2Q2Q8WVN8 375 aa16.08■□□□□ 0.16
CCDC28A-201ENST00000332797 PIGKQ92643 395 aa16.08■□□□□ 0.16
CCDC28A-201ENST00000332797 NUDCD1Q96RS6 583 aa16.08■□□□□ 0.16
CCDC28A-201ENST00000332797 TUBGCP5Q96RT8 1024 aa16.08■□□□□ 0.16
CCDC28A-201ENST00000332797 CEP41Q9BYV8 373 aa16.08■□□□□ 0.16
CCDC28A-201ENST00000332797 BRD8Q9H0E9 1235 aa16.08■□□□□ 0.16
CCDC28A-201ENST00000332797 PCED1AQ9H1Q7 454 aa16.08■□□□□ 0.16
CCDC28A-201ENST00000332797 RBM22Q9NW64 420 aaKnown RBP eCLIP16.08■□□□□ 0.16
CCDC28A-201ENST00000332797 TNRC6BQ9UPQ9 1833 aaKnown RBP16.08■□□□□ 0.16
CCDC28A-201ENST00000332797 NUMA1Q14980 2115 aa16.07■□□□□ 0.16
CCDC28A-201ENST00000332797 TBC1D3DA0A087WVF3 549 aa16.07■□□□□ 0.16
CCDC28A-201ENST00000332797 TBC1D3IA0A087WXS9 549 aa16.07■□□□□ 0.16
CCDC28A-201ENST00000332797 TBC1D3EA0A087X179 549 aa16.07■□□□□ 0.16
CCDC28A-201ENST00000332797 TBC1D3KA0A087X1G2 549 aa16.07■□□□□ 0.16
CCDC28A-201ENST00000332797 BCLAF3A2AJT9 711 aaKnown RBP16.07■□□□□ 0.16
CCDC28A-201ENST00000332797 TBC1D3FA6NER0 549 aaPredicted RBP16.07■□□□□ 0.16
CCDC28A-201ENST00000332797 METTL12A8MUP2 240 aa16.07■□□□□ 0.16
CCDC28A-201ENST00000332797 TBC1D3LB9A6J9 549 aa16.07■□□□□ 0.16
CCDC28A-201ENST00000332797 TJP3O95049 919 aa16.07■□□□□ 0.16
CCDC28A-201ENST00000332797 JCHAINP01591 159 aa16.07■□□□□ 0.16
CCDC28A-201ENST00000332797 HLA-DQB2P05538 268 aa16.07■□□□□ 0.16
CCDC28A-201ENST00000332797 TBC1D3HP0C7X1 549 aa16.07■□□□□ 0.16
CCDC28A-201ENST00000332797 SERPINA4P29622 427 aa16.07■□□□□ 0.16
CCDC28A-201ENST00000332797 MPLP40238 635 aa16.07■□□□□ 0.16
CCDC28A-201ENST00000332797 TAS2R38P59533 333 aa16.07■□□□□ 0.16
CCDC28A-201ENST00000332797 IFI35P80217 286 aaPredicted RBP16.07■□□□□ 0.16
CCDC28A-201ENST00000332797 BCL2L1Q07817 233 aa16.07■□□□□ 0.16
CCDC28A-201ENST00000332797 ZBTB17Q13105 803 aa16.07■□□□□ 0.16
CCDC28A-201ENST00000332797 PRKD1Q15139 912 aaPredicted RBP16.07■□□□□ 0.16
CCDC28A-201ENST00000332797 WDR45BQ5MNZ6 344 aa16.07■□□□□ 0.16
CCDC28A-201ENST00000332797 KIAA0895LQ68EN5 471 aa16.07■□□□□ 0.16
CCDC28A-201ENST00000332797 TBC1D3GQ6DHY5 549 aa16.07■□□□□ 0.16
CCDC28A-201ENST00000332797 TBC1D3CQ6IPX1 549 aa16.07■□□□□ 0.16
CCDC28A-201ENST00000332797 TBC1D3Q8IZP1 549 aaPredicted RBP16.07■□□□□ 0.16
CCDC28A-201ENST00000332797 PAF1Q8N7H5 531 aa16.07■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms