RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 KCTD15Q96SI1 283 aaPredicted RBP13.59□□□□□ -0.23
CCDC88C-201ENST00000331194 PDZD7Q9H5P4 517 aa13.59□□□□□ -0.23
CCDC88C-201ENST00000331194 CD300AQ9UGN4 299 aa13.59□□□□□ -0.23
CCDC88C-201ENST00000331194 TSPAN16Q9UKR8 245 aa13.59□□□□□ -0.23
CCDC88C-201ENST00000331194 V9GYQ6 96 aa13.59□□□□□ -0.23
CCDC88C-201ENST00000331194 ZNF701M0R085 212 aaPredicted RBP13.59□□□□□ -0.23
CCDC88C-201ENST00000331194 EI24O14681 340 aa13.59□□□□□ -0.23
CCDC88C-201ENST00000331194 B4GALT5O43286 388 aa13.59□□□□□ -0.23
CCDC88C-201ENST00000331194 BCL10O95999 233 aa13.59□□□□□ -0.23
CCDC88C-201ENST00000331194 ITGB3P05106 788 aa13.59□□□□□ -0.23
CCDC88C-201ENST00000331194 NFICP08651 508 aa13.59□□□□□ -0.23
CCDC88C-201ENST00000331194 JAK1P23458 1154 aa13.59□□□□□ -0.23
CCDC88C-201ENST00000331194 SDC4P31431 198 aa13.59□□□□□ -0.23
CCDC88C-201ENST00000331194 FASTKQ14296 549 aaKnown RBP13.59□□□□□ -0.23
CCDC88C-201ENST00000331194 PRPSAP1Q14558 356 aa13.59□□□□□ -0.23
CCDC88C-201ENST00000331194 ZIK1Q3SY52 487 aaPredicted RBP13.59□□□□□ -0.23
CCDC88C-201ENST00000331194 XKR3Q5GH77 459 aa13.59□□□□□ -0.23
CCDC88C-201ENST00000331194 NCBP2-AS2Q69YL0 99 aa13.59□□□□□ -0.23
CCDC88C-201ENST00000331194 ZNF280DQ6N043 979 aa13.59□□□□□ -0.23
CCDC88C-201ENST00000331194 DSG4Q86SJ6 1040 aa13.59□□□□□ -0.23
CCDC88C-201ENST00000331194 CMTR2Q8IYT2 770 aaKnown RBP13.59□□□□□ -0.23
CCDC88C-201ENST00000331194 ANKFN1Q8N957 763 aa13.59□□□□□ -0.23
CCDC88C-201ENST00000331194 PBXIP1Q96AQ6 731 aa13.59□□□□□ -0.23
CCDC88C-201ENST00000331194 P2RY11Q96G91 374 aa13.59□□□□□ -0.23
CCDC88C-201ENST00000331194 CSPG4P5Q96PW8 444 aa13.59□□□□□ -0.23
CCDC88C-201ENST00000331194 NDEL1Q9GZM8 345 aa13.59□□□□□ -0.23
CCDC88C-201ENST00000331194 KLHL25Q9H0H3 589 aa13.59□□□□□ -0.23
CCDC88C-201ENST00000331194 FBRSL1Q9HCM7 1045 aaKnown RBP13.59□□□□□ -0.23
CCDC88C-201ENST00000331194 CYP4F12Q9HCS2 524 aa13.59□□□□□ -0.23
CCDC88C-201ENST00000331194 SPAG4Q9NPE6 437 aa13.59□□□□□ -0.23
CCDC88C-201ENST00000331194 CHRAC1Q9NRG0 131 aa13.59□□□□□ -0.23
CCDC88C-201ENST00000331194 GIN1Q9NXP7 522 aa13.59□□□□□ -0.23
CCDC88C-201ENST00000331194 TUBA8Q9NY65 449 aaPredicted RBP13.59□□□□□ -0.23
CCDC88C-201ENST00000331194 MORF4L1Q9UBU8 362 aa13.59□□□□□ -0.23
CCDC88C-201ENST00000331194 HESX1Q9UBX0 185 aa13.59□□□□□ -0.23
CCDC88C-201ENST00000331194 GIT1Q9Y2X7 761 aa13.59□□□□□ -0.23
CCDC88C-201ENST00000331194 TCAF1Q9Y4C2 921 aa13.59□□□□□ -0.23
CCDC88C-201ENST00000331194 SNAP29O95721 258 aa13.59□□□□□ -0.23
CCDC88C-201ENST00000331194 PFKMP08237 780 aa13.59□□□□□ -0.23
CCDC88C-201ENST00000331194 TSPAN8P19075 237 aa13.59□□□□□ -0.23
CCDC88C-201ENST00000331194 C1QTNF8P60827 252 aa13.59□□□□□ -0.23
CCDC88C-201ENST00000331194 RPS3AP61247 264 aaKnown RBP13.59□□□□□ -0.23
CCDC88C-201ENST00000331194 PIGFQ07326 219 aa13.59□□□□□ -0.23
CCDC88C-201ENST00000331194 DMPKQ09013 629 aa13.59□□□□□ -0.23
CCDC88C-201ENST00000331194 SEPT6Q14141 434 aa13.59□□□□□ -0.23
CCDC88C-201ENST00000331194 HERC3Q15034 1050 aa13.59□□□□□ -0.23
CCDC88C-201ENST00000331194 SLC36A3Q495N2 470 aa13.59□□□□□ -0.23
CCDC88C-201ENST00000331194 ZNF618Q5T7W0 954 aa13.59□□□□□ -0.23
CCDC88C-201ENST00000331194 ZYG11AQ6WRX3 759 aa13.59□□□□□ -0.23
CCDC88C-201ENST00000331194 ERMP1Q7Z2K6 904 aa13.59□□□□□ -0.23
CCDC88C-201ENST00000331194 NT5DC4Q86YG4 428 aa13.59□□□□□ -0.23
CCDC88C-201ENST00000331194 NIM1KQ8IY84 436 aa13.59□□□□□ -0.23
CCDC88C-201ENST00000331194 SHCBP1Q8NEM2 672 aa13.59□□□□□ -0.23
CCDC88C-201ENST00000331194 SREK1Q8WXA9 508 aaKnown RBP13.59□□□□□ -0.23
CCDC88C-201ENST00000331194 VPS39Q96JC1 886 aa13.59□□□□□ -0.23
CCDC88C-201ENST00000331194 ZMAT2Q96NC0 199 aaKnown RBP13.59□□□□□ -0.23
CCDC88C-201ENST00000331194 POLE4Q9NR33 117 aa13.59□□□□□ -0.23
CCDC88C-201ENST00000331194 PIM2Q9P1W9 311 aa13.59□□□□□ -0.23
CCDC88C-201ENST00000331194 CPQQ9Y646 472 aa13.59□□□□□ -0.23
CCDC88C-201ENST00000331194 ZNF638Q14966 1978 aaKnown RBP13.58□□□□□ -0.24
CCDC88C-201ENST00000331194 SYNJ2BP-COX16A0A087WUM0 186 aa13.58□□□□□ -0.24
CCDC88C-201ENST00000331194 AXIN1O15169 862 aa13.58□□□□□ -0.24
CCDC88C-201ENST00000331194 MFSD11O43934 449 aa13.58□□□□□ -0.24
CCDC88C-201ENST00000331194 MSCO60682 206 aa13.58□□□□□ -0.24
CCDC88C-201ENST00000331194 GABBR2O75899 941 aa13.58□□□□□ -0.24
CCDC88C-201ENST00000331194 BMP2P12643 396 aa13.58□□□□□ -0.24
CCDC88C-201ENST00000331194 TCEA1P23193 301 aaKnown RBP13.58□□□□□ -0.24
CCDC88C-201ENST00000331194 YWHAQP27348 245 aa13.58□□□□□ -0.24
CCDC88C-201ENST00000331194 NKX2-5P52952 324 aaPredicted RBP13.58□□□□□ -0.24
CCDC88C-201ENST00000331194 IFITM3Q01628 133 aa13.58□□□□□ -0.24
CCDC88C-201ENST00000331194 TTC30AQ86WT1 665 aa13.58□□□□□ -0.24
CCDC88C-201ENST00000331194 PNPLA1Q8N8W4 532 aa13.58□□□□□ -0.24
CCDC88C-201ENST00000331194 C1orf127Q8N9H9 656 aa13.58□□□□□ -0.24
CCDC88C-201ENST00000331194 MAGEE2Q8TD90 523 aaPredicted RBP13.58□□□□□ -0.24
CCDC88C-201ENST00000331194 TRUB1Q8WWH5 349 aaKnown RBP13.58□□□□□ -0.24
CCDC88C-201ENST00000331194 SNX19Q92543 992 aa13.58□□□□□ -0.24
CCDC88C-201ENST00000331194 GLT1D1Q96MS3 346 aa13.58□□□□□ -0.24
CCDC88C-201ENST00000331194 UHRF1Q96T88 793 aaPredicted RBP13.58□□□□□ -0.24
CCDC88C-201ENST00000331194 TPK1Q9H3S4 243 aa13.58□□□□□ -0.24
CCDC88C-201ENST00000331194 UBP1Q9NZI7 540 aa13.58□□□□□ -0.24
CCDC88C-201ENST00000331194 COX16Q9P0S2 106 aa13.58□□□□□ -0.24
CCDC88C-201ENST00000331194 XPR1Q9UBH6 696 aa13.58□□□□□ -0.24
CCDC88C-201ENST00000331194 CPSF3Q9UKF6 684 aaKnown RBP13.58□□□□□ -0.24
CCDC88C-201ENST00000331194 MRASO14807 208 aa13.58□□□□□ -0.24
CCDC88C-201ENST00000331194 SNAP91O60641 907 aa13.58□□□□□ -0.24
CCDC88C-201ENST00000331194 TNNC2P02585 160 aa13.58□□□□□ -0.24
CCDC88C-201ENST00000331194 LRPAP1P30533 357 aa13.58□□□□□ -0.24
CCDC88C-201ENST00000331194 TSTD2Q5T7W7 516 aa13.58□□□□□ -0.24
CCDC88C-201ENST00000331194 EEF1DP3Q658K8 133 aa13.58□□□□□ -0.24
CCDC88C-201ENST00000331194 SLC41A1Q8IVJ1 513 aa13.58□□□□□ -0.24
CCDC88C-201ENST00000331194 LRRC71Q8N4P6 559 aa13.58□□□□□ -0.24
CCDC88C-201ENST00000331194 DNAAF3Q8N9W5 541 aa13.58□□□□□ -0.24
CCDC88C-201ENST00000331194 PCYOX1LQ8NBM8 494 aa13.58□□□□□ -0.24
CCDC88C-201ENST00000331194 ZNF420Q8TAQ5 688 aaPredicted RBP13.58□□□□□ -0.24
CCDC88C-201ENST00000331194 ALPK1Q96QP1 1244 aa13.58□□□□□ -0.24
CCDC88C-201ENST00000331194 ZNF670Q9BS34 389 aa13.58□□□□□ -0.24
CCDC88C-201ENST00000331194 EFHD1Q9BUP0 239 aa13.58□□□□□ -0.24
CCDC88C-201ENST00000331194 LTB4R2Q9NPC1 389 aa13.58□□□□□ -0.24
CCDC88C-201ENST00000331194 NOX1Q9Y5S8 564 aa13.58□□□□□ -0.24
CCDC88C-201ENST00000331194 TANC1Q9C0D5 1861 aa13.58□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms