RNA–Protein interactions for RNA: ENST00000323701.10

USP39-201, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,177 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-201ENST00000323701 ARHGAP26Q9UNA1 814 aa18.64■□□□□ 0.57
USP39-201ENST00000323701 TCAF1Q9Y4C2 921 aa18.64■□□□□ 0.57
USP39-201ENST00000323701 LOC285095A0A1B0GVY8 99 aa18.63■□□□□ 0.57
USP39-201ENST00000323701 NDUFAB1O14561 156 aa18.63■□□□□ 0.57
USP39-201ENST00000323701 LPXNO60711 386 aa18.63■□□□□ 0.57
USP39-201ENST00000323701 KRT37O76014 449 aa18.63■□□□□ 0.57
USP39-201ENST00000323701 BMP1P13497 986 aa18.63■□□□□ 0.57
USP39-201ENST00000323701 ERVK-21P61565 698 aa18.63■□□□□ 0.57
USP39-201ENST00000323701 SLC18A2Q05940 514 aa18.63■□□□□ 0.57
USP39-201ENST00000323701 SF3A3Q12874 501 aaKnown RBP eCLIP18.63■□□□□ 0.57
USP39-201ENST00000323701 CNGA3Q16281 694 aa18.63■□□□□ 0.57
USP39-201ENST00000323701 PRSS36Q5K4E3 855 aa18.63■□□□□ 0.57
USP39-201ENST00000323701 KCNMB4Q86W47 210 aa18.63■□□□□ 0.57
USP39-201ENST00000323701 LRRC34Q8IZ02 419 aa18.63■□□□□ 0.57
USP39-201ENST00000323701 DYDC1Q8WWB3 177 aa18.63■□□□□ 0.57
USP39-201ENST00000323701 CKAP2Q8WWK9 683 aa18.63■□□□□ 0.57
USP39-201ENST00000323701 ING5Q8WYH8 240 aa18.63■□□□□ 0.57
USP39-201ENST00000323701 SPOCK2Q92563 424 aa18.63■□□□□ 0.57
USP39-201ENST00000323701 ATXN7L3BQ96GX2 97 aa18.63■□□□□ 0.57
USP39-201ENST00000323701 SMIM14Q96QK8 99 aa18.63■□□□□ 0.57
USP39-201ENST00000323701 HELZP42694 1942 aaKnown RBP18.63■□□□□ 0.57
USP39-201ENST00000323701 CCDC195A0A1B0GUA6 201 aa18.62■□□□□ 0.57
USP39-201ENST00000323701 K7ERQ8 282 aa18.62■□□□□ 0.57
USP39-201ENST00000323701 FAM107AO95990 144 aa18.62■□□□□ 0.57
USP39-201ENST00000323701 ALDOAP04075 364 aaKnown RBP18.62■□□□□ 0.57
USP39-201ENST00000323701 CR2P20023 1033 aa18.62■□□□□ 0.57
USP39-201ENST00000323701 DRD4P21917 467 aa18.62■□□□□ 0.57
USP39-201ENST00000323701 ADRA1DP25100 572 aa18.62■□□□□ 0.57
USP39-201ENST00000323701 ARCN1P48444 511 aaKnown RBP18.62■□□□□ 0.57
USP39-201ENST00000323701 SCNN1BP51168 640 aa18.62■□□□□ 0.57
USP39-201ENST00000323701 CDH18Q13634 790 aa18.62■□□□□ 0.57
USP39-201ENST00000323701 SEPT6Q14141 434 aa18.62■□□□□ 0.57
USP39-201ENST00000323701 GALNT3Q14435 633 aa18.62■□□□□ 0.57
USP39-201ENST00000323701 MFN1Q8IWA4 741 aa18.62■□□□□ 0.57
USP39-201ENST00000323701 ACVR1CQ8NER5 493 aa18.62■□□□□ 0.57
USP39-201ENST00000323701 ZNF473Q8WTR7 871 aaKnown RBP18.62■□□□□ 0.57
USP39-201ENST00000323701 CHMP6Q96FZ7 201 aa18.62■□□□□ 0.57
USP39-201ENST00000323701 PPP1R2P1Q96PQ5 205 aa18.62■□□□□ 0.57
USP39-201ENST00000323701 CINPQ9BW66 212 aaPredicted RBP18.62■□□□□ 0.57
USP39-201ENST00000323701 SSU72Q9NP77 194 aaKnown RBP18.62■□□□□ 0.57
USP39-201ENST00000323701 IARS2Q9NSE4 1012 aaKnown RBP18.62■□□□□ 0.57
USP39-201ENST00000323701 SEPT3Q9UH03 358 aa18.62■□□□□ 0.57
USP39-201ENST00000323701 VPS51Q9UID3 782 aa18.62■□□□□ 0.57
USP39-201ENST00000323701 VPS28Q9UK41 221 aa18.62■□□□□ 0.57
USP39-201ENST00000323701 SMG5Q9UPR3 1016 aaKnown RBP18.62■□□□□ 0.57
USP39-201ENST00000323701 KCTD3Q9Y597 815 aa18.62■□□□□ 0.57
USP39-201ENST00000323701 EPOPA6NHQ4 379 aa18.62■□□□□ 0.57
USP39-201ENST00000323701 PIRTP0C851 137 aa18.62■□□□□ 0.57
USP39-201ENST00000323701 AVPR1AP37288 418 aa18.62■□□□□ 0.57
USP39-201ENST00000323701 SRLQ86TD4 932 aa18.62■□□□□ 0.57
USP39-201ENST00000323701 CDKL2Q92772 493 aa18.62■□□□□ 0.57
USP39-201ENST00000323701 PBX4Q9BYU1 374 aa18.62■□□□□ 0.57
USP39-201ENST00000323701 TREX1Q9NSU2 369 aa18.62■□□□□ 0.57
USP39-201ENST00000323701 SRRM3A6NNA2 597 aaPredicted RBP18.61■□□□□ 0.57
USP39-201ENST00000323701 CCL22O00626 93 aa18.61■□□□□ 0.57
USP39-201ENST00000323701 KRT38O76015 456 aa18.61■□□□□ 0.57
USP39-201ENST00000323701 TMCC1O94876 653 aa18.61■□□□□ 0.57
USP39-201ENST00000323701 VAPBO95292 243 aa18.61■□□□□ 0.57
USP39-201ENST00000323701 ITGA2BP08514 1039 aa18.61■□□□□ 0.57
USP39-201ENST00000323701 CCT5P48643 541 aa18.61■□□□□ 0.57
USP39-201ENST00000323701 SERPINH1P50454 418 aaKnown RBP18.61■□□□□ 0.57
USP39-201ENST00000323701 NEK3P51956 506 aa18.61■□□□□ 0.57
USP39-201ENST00000323701 SLC18A1P54219 525 aa18.61■□□□□ 0.57
USP39-201ENST00000323701 FRG1Q14331 258 aaKnown RBP18.61■□□□□ 0.57
USP39-201ENST00000323701 LVRNQ6Q4G3 990 aa18.61■□□□□ 0.57
USP39-201ENST00000323701 CPXM2Q8N436 756 aa18.61■□□□□ 0.57
USP39-201ENST00000323701 TRIB3Q96RU7 358 aa18.61■□□□□ 0.57
USP39-201ENST00000323701 MCMBPQ9BTE3 642 aa18.61■□□□□ 0.57
USP39-201ENST00000323701 LINC00597Q9H2U6 94 aa18.61■□□□□ 0.57
USP39-201ENST00000323701 TASP1Q9H6P5 420 aa18.61■□□□□ 0.57
USP39-201ENST00000323701 RRP15Q9Y3B9 282 aaKnown RBP18.61■□□□□ 0.57
USP39-201ENST00000323701 TCP11X1B4DZS4 312 aa18.61■□□□□ 0.57
USP39-201ENST00000323701 AP3B1O00203 1094 aa18.61■□□□□ 0.57
USP39-201ENST00000323701 CEBPBP17676 345 aa18.61■□□□□ 0.57
USP39-201ENST00000323701 GABRB3P28472 473 aa18.61■□□□□ 0.57
USP39-201ENST00000323701 HOXA9P31269 272 aa18.61■□□□□ 0.57
USP39-201ENST00000323701 CD70P32970 193 aa18.61■□□□□ 0.57
USP39-201ENST00000323701 PGGT1BP53609 377 aa18.61■□□□□ 0.57
USP39-201ENST00000323701 PTPRCAPQ14761 206 aa18.61■□□□□ 0.57
USP39-201ENST00000323701 FYB2Q5VWT5 728 aa18.61■□□□□ 0.57
USP39-201ENST00000323701 STRA8Q7Z7C7 330 aa18.61■□□□□ 0.57
USP39-201ENST00000323701 TMEM25Q86YD3 366 aa18.61■□□□□ 0.57
USP39-201ENST00000323701 PPHLN1Q8NEY8 458 aaKnown RBP18.61■□□□□ 0.57
USP39-201ENST00000323701 VN1R2Q8NFZ6 395 aa18.61■□□□□ 0.57
USP39-201ENST00000323701 GDPD5Q8WTR4 605 aa18.61■□□□□ 0.57
USP39-201ENST00000323701 SGSM3Q96HU1 749 aa18.61■□□□□ 0.57
USP39-201ENST00000323701 PRKD2Q9BZL6 878 aa18.61■□□□□ 0.57
USP39-201ENST00000323701 SLC13A1Q9BZW2 595 aa18.61■□□□□ 0.57
USP39-201ENST00000323701 INTS6Q9UL03 887 aaKnown RBP18.61■□□□□ 0.57
USP39-201ENST00000323701 FCF1Q9Y324 198 aaKnown RBP18.61■□□□□ 0.57
USP39-201ENST00000323701 CDK18Q07002 472 aa18.6■□□□□ 0.57
USP39-201ENST00000323701 LMAN2Q12907 356 aa18.6■□□□□ 0.57
USP39-201ENST00000323701 CCDC117Q8IWD4 279 aaPredicted RBP18.6■□□□□ 0.57
USP39-201ENST00000323701 DENND6AQ8IWF6 608 aa18.6■□□□□ 0.57
USP39-201ENST00000323701 ITFG1Q8TB96 612 aa18.6■□□□□ 0.57
USP39-201ENST00000323701 APOPT1Q96IL0 206 aa18.6■□□□□ 0.57
USP39-201ENST00000323701 TDP1Q9NUW8 608 aa18.6■□□□□ 0.57
USP39-201ENST00000323701 PCMTD2Q9NV79 361 aa18.6■□□□□ 0.57
USP39-201ENST00000323701 PRKAG3Q9UGI9 489 aa18.6■□□□□ 0.57
USP39-201ENST00000323701 GGT7Q9UJ14 662 aa18.6■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms