RNA–Protein interactions for RNA: ENST00000314759.5

SKA3-202, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SKA3, Length 2,919 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-202ENST00000314759 LPGAT1Q92604 370 aa13.59□□□□□ -0.23
SKA3-202ENST00000314759 TMEM79Q9BSE2 394 aa13.59□□□□□ -0.23
SKA3-202ENST00000314759 UNC93B1Q9H1C4 597 aa13.59□□□□□ -0.23
SKA3-202ENST00000314759 STAP1Q9ULZ2 295 aa13.59□□□□□ -0.23
SKA3-202ENST00000314759 SNX13Q9Y5W8 968 aa13.59□□□□□ -0.23
SKA3-202ENST00000314759 ZSWIM8A7E2V4 1837 aa13.59□□□□□ -0.23
SKA3-202ENST00000314759 PRORSD1PA6NEY8 169 aa13.59□□□□□ -0.23
SKA3-202ENST00000314759 H3BNH8 94 aa13.59□□□□□ -0.23
SKA3-202ENST00000314759 FBP2O00757 339 aa13.59□□□□□ -0.23
SKA3-202ENST00000314759 TRIM24O15164 1050 aa13.59□□□□□ -0.23
SKA3-202ENST00000314759 COL6A2P12110 1019 aa13.59□□□□□ -0.23
SKA3-202ENST00000314759 HNRNPLP14866 589 aaKnown RBP eCLIP13.59□□□□□ -0.23
SKA3-202ENST00000314759 SEMA3BQ13214 749 aa13.59□□□□□ -0.23
SKA3-202ENST00000314759 CTBP1Q13363 440 aa13.59□□□□□ -0.23
SKA3-202ENST00000314759 LRP8Q14114 963 aa13.59□□□□□ -0.23
SKA3-202ENST00000314759 EML3Q32P44 896 aa13.59□□□□□ -0.23
SKA3-202ENST00000314759 ZNF772Q68DY9 489 aaPredicted RBP13.59□□□□□ -0.23
SKA3-202ENST00000314759 CNSTQ6PJW8 725 aa13.59□□□□□ -0.23
SKA3-202ENST00000314759 ANKRD23Q86SG2 305 aa13.59□□□□□ -0.23
SKA3-202ENST00000314759 PATL1Q86TB9 770 aaKnown RBP13.59□□□□□ -0.23
SKA3-202ENST00000314759 TXNDC5Q8NBS9 432 aaKnown RBP13.59□□□□□ -0.23
SKA3-202ENST00000314759 SGF29Q96ES7 293 aa13.59□□□□□ -0.23
SKA3-202ENST00000314759 CIB1Q99828 191 aa13.59□□□□□ -0.23
SKA3-202ENST00000314759 KIFC1Q9BW19 673 aa13.59□□□□□ -0.23
SKA3-202ENST00000314759 TRPV6Q9H1D0 765 aa13.59□□□□□ -0.23
SKA3-202ENST00000314759 TRPC7Q9HCX4 862 aa13.59□□□□□ -0.23
SKA3-202ENST00000314759 CACNA2D2Q9NY47 1150 aa13.59□□□□□ -0.23
SKA3-202ENST00000314759 GINS2Q9Y248 185 aa13.59□□□□□ -0.23
SKA3-202ENST00000314759 FIS1Q9Y3D6 152 aa13.59□□□□□ -0.23
SKA3-202ENST00000314759 TRPC5OSA6NMA1 111 aa13.58□□□□□ -0.24
SKA3-202ENST00000314759 PIRO00625 290 aa13.58□□□□□ -0.24
SKA3-202ENST00000314759 FYNP06241 537 aa13.58□□□□□ -0.24
SKA3-202ENST00000314759 EPHX2P34913 555 aa13.58□□□□□ -0.24
SKA3-202ENST00000314759 TPI1P60174 286 aa13.58□□□□□ -0.24
SKA3-202ENST00000314759 RAB10P61026 200 aa13.58□□□□□ -0.24
SKA3-202ENST00000314759 MPP1Q00013 466 aa13.58□□□□□ -0.24
SKA3-202ENST00000314759 CDH17Q12864 832 aa13.58□□□□□ -0.24
SKA3-202ENST00000314759 DCAF4L1Q3SXM0 396 aa13.58□□□□□ -0.24
SKA3-202ENST00000314759 CYP2R1Q6VVX0 501 aa13.58□□□□□ -0.24
SKA3-202ENST00000314759 CHSY3Q70JA7 882 aa13.58□□□□□ -0.24
SKA3-202ENST00000314759 HERC6Q8IVU3 1022 aa13.58□□□□□ -0.24
SKA3-202ENST00000314759 LZTR1Q8N653 840 aa13.58□□□□□ -0.24
SKA3-202ENST00000314759 SPPL2BQ8TCT7 592 aa13.58□□□□□ -0.24
SKA3-202ENST00000314759 SLC2A13Q96QE2 648 aa13.58□□□□□ -0.24
SKA3-202ENST00000314759 FTHL17Q9BXU8 183 aa13.58□□□□□ -0.24
SKA3-202ENST00000314759 DUSP16Q9BY84 665 aa13.58□□□□□ -0.24
SKA3-202ENST00000314759 OSBPL6Q9BZF3 934 aa13.58□□□□□ -0.24
SKA3-202ENST00000314759 PLGRKTQ9HBL7 147 aa13.58□□□□□ -0.24
SKA3-202ENST00000314759 PFDN4Q9NQP4 134 aa13.58□□□□□ -0.24
SKA3-202ENST00000314759 NSMCE4AQ9NXX6 385 aa13.58□□□□□ -0.24
SKA3-202ENST00000314759 TRHDEQ9UKU6 1024 aa13.58□□□□□ -0.24
SKA3-202ENST00000314759 CLEC11AQ9Y240 323 aa13.58□□□□□ -0.24
SKA3-202ENST00000314759 NEMP2A6NFY4 417 aa13.58□□□□□ -0.24
SKA3-202ENST00000314759 NCAM2O15394 837 aa13.58□□□□□ -0.24
SKA3-202ENST00000314759 NPHS1O60500 1241 aa13.58□□□□□ -0.24
SKA3-202ENST00000314759 EN1Q05925 392 aaPredicted RBP13.58□□□□□ -0.24
SKA3-202ENST00000314759 HMBOX1Q6NT76 420 aa13.58□□□□□ -0.24
SKA3-202ENST00000314759 ALKAL1Q6UXT8 129 aa13.58□□□□□ -0.24
SKA3-202ENST00000314759 SPNS2Q8IVW8 549 aa13.58□□□□□ -0.24
SKA3-202ENST00000314759 RNF168Q8IYW5 571 aaPredicted RBP13.58□□□□□ -0.24
SKA3-202ENST00000314759 TEKT5Q96M29 485 aa13.58□□□□□ -0.24
SKA3-202ENST00000314759 OSBPL2Q9H1P3 480 aa13.58□□□□□ -0.24
SKA3-202ENST00000314759 NOL11Q9H8H0 719 aaKnown RBP13.58□□□□□ -0.24
SKA3-202ENST00000314759 LRRC4Q9HBW1 653 aa13.58□□□□□ -0.24
SKA3-202ENST00000314759 WDR6Q9NNW5 1121 aaKnown RBP13.58□□□□□ -0.24
SKA3-202ENST00000314759 TNFRSF12AQ9NP84 129 aa13.58□□□□□ -0.24
SKA3-202ENST00000314759 GTSE1Q9NYZ3 720 aa13.58□□□□□ -0.24
SKA3-202ENST00000314759 NCKIPSDQ9NZQ3 722 aa13.58□□□□□ -0.24
SKA3-202ENST00000314759 DOLKQ9UPQ8 538 aa13.58□□□□□ -0.24
SKA3-202ENST00000314759 MYRFQ9Y2G1 1151 aa13.58□□□□□ -0.24
SKA3-202ENST00000314759 CROCCQ5TZA2 2017 aa13.57□□□□□ -0.24
SKA3-202ENST00000314759 JCHAINP01591 159 aa13.57□□□□□ -0.24
SKA3-202ENST00000314759 AKAP5P24588 427 aa13.57□□□□□ -0.24
SKA3-202ENST00000314759 STX5Q13190 355 aa13.57□□□□□ -0.24
SKA3-202ENST00000314759 KCTD2Q14681 263 aa13.57□□□□□ -0.24
SKA3-202ENST00000314759 KCTD21Q4G0X4 260 aa13.57□□□□□ -0.24
SKA3-202ENST00000314759 REP15Q6BDI9 236 aa13.57□□□□□ -0.24
SKA3-202ENST00000314759 DHRS4L2Q6PKH6 230 aa13.57□□□□□ -0.24
SKA3-202ENST00000314759 OTOP3Q7RTS5 596 aa13.57□□□□□ -0.24
SKA3-202ENST00000314759 SNX31Q8N9S9 440 aa13.57□□□□□ -0.24
SKA3-202ENST00000314759 TOP1MTQ969P6 601 aa13.57□□□□□ -0.24
SKA3-202ENST00000314759 GFM2Q969S9 779 aaKnown RBP13.57□□□□□ -0.24
SKA3-202ENST00000314759 HDAC11Q96DB2 347 aa13.57□□□□□ -0.24
SKA3-202ENST00000314759 BIRC8Q96P09 236 aa13.57□□□□□ -0.24
SKA3-202ENST00000314759 NXF3Q9H4D5 531 aaKnown RBP13.57□□□□□ -0.24
SKA3-202ENST00000314759 RAD54BQ9Y620 910 aa13.57□□□□□ -0.24
SKA3-202ENST00000314759 TCRBV3S1A0A5B6 114 aa13.57□□□□□ -0.24
SKA3-202ENST00000314759 HEATR9A2RTY3 570 aa13.57□□□□□ -0.24
SKA3-202ENST00000314759 NRP1O14786 923 aa13.57□□□□□ -0.24
SKA3-202ENST00000314759 SLC25A27O95847 323 aa13.57□□□□□ -0.24
SKA3-202ENST00000314759 STMN1P16949 149 aa13.57□□□□□ -0.24
SKA3-202ENST00000314759 RABGGTBP53611 331 aa13.57□□□□□ -0.24
SKA3-202ENST00000314759 PPP1R3AQ16821 1122 aa13.57□□□□□ -0.24
SKA3-202ENST00000314759 MARCH8Q5T0T0 291 aa13.57□□□□□ -0.24
SKA3-202ENST00000314759 KRT80Q6KB66 452 aa13.57□□□□□ -0.24
SKA3-202ENST00000314759 CLVS1Q8IUQ0 354 aaPredicted RBP13.57□□□□□ -0.24
SKA3-202ENST00000314759 B3GALNT2Q8NCR0 500 aa13.57□□□□□ -0.24
SKA3-202ENST00000314759 APPL2Q8NEU8 664 aa13.57□□□□□ -0.24
SKA3-202ENST00000314759 HNRNPABQ99729 332 aaKnown RBP13.57□□□□□ -0.24
SKA3-202ENST00000314759 MRPL46Q9H2W6 279 aaKnown RBP13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 68.7 ms