RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 UCKL1Q9NWZ5 548 aa19.8■□□□□ 0.76
LIME1-201ENST00000309546 DNAJC28Q9NX36 388 aa19.8■□□□□ 0.76
LIME1-201ENST00000309546 PCSK1NQ9UHG2 260 aa19.8■□□□□ 0.76
LIME1-201ENST00000309546 POM121BA6NF01 834 aa19.79■□□□□ 0.76
LIME1-201ENST00000309546 TRABD2BA6NFA1 517 aa19.79■□□□□ 0.76
LIME1-201ENST00000309546 WASH4PA8MWX3 477 aa19.79■□□□□ 0.76
LIME1-201ENST00000309546 EEF2KO00418 725 aaKnown RBP19.79■□□□□ 0.76
LIME1-201ENST00000309546 TRIM38O00635 465 aa19.79■□□□□ 0.76
LIME1-201ENST00000309546 SIGLEC6O43699 453 aa19.79■□□□□ 0.76
LIME1-201ENST00000309546 C1SP09871 688 aa19.79■□□□□ 0.76
LIME1-201ENST00000309546 CKMT2P17540 419 aa19.79■□□□□ 0.76
LIME1-201ENST00000309546 HNF1BP35680 557 aa19.79■□□□□ 0.76
LIME1-201ENST00000309546 DAB2P98082 770 aa19.79■□□□□ 0.76
LIME1-201ENST00000309546 SERINC3Q13530 473 aa19.79■□□□□ 0.76
LIME1-201ENST00000309546 HES3Q5TGS1 186 aa19.79■□□□□ 0.76
LIME1-201ENST00000309546 TTC7BQ86TV6 843 aa19.79■□□□□ 0.76
LIME1-201ENST00000309546 ZSCAN30Q86W11 494 aa19.79■□□□□ 0.76
LIME1-201ENST00000309546 TMPRSS12Q86WS5 348 aa19.79■□□□□ 0.76
LIME1-201ENST00000309546 UMODL1-AS1Q8N2C9 162 aa19.79■□□□□ 0.76
LIME1-201ENST00000309546 SLC25A45Q8N413 288 aa19.79■□□□□ 0.76
LIME1-201ENST00000309546 FAM174AQ8TBP5 190 aa19.79■□□□□ 0.76
LIME1-201ENST00000309546 TSC1Q92574 1164 aa19.79■□□□□ 0.76
LIME1-201ENST00000309546 ZNF653Q96CK0 615 aa19.79■□□□□ 0.76
LIME1-201ENST00000309546 ARHGEF26Q96DR7 871 aa19.79■□□□□ 0.76
LIME1-201ENST00000309546 CELF6Q96J87 481 aaKnown RBP19.79■□□□□ 0.76
LIME1-201ENST00000309546 BMFQ96LC9 184 aa19.79■□□□□ 0.76
LIME1-201ENST00000309546 SNRNP25Q9BV90 132 aaKnown RBP19.79■□□□□ 0.76
LIME1-201ENST00000309546 UBA2Q9UBT2 640 aaPredicted RBP19.79■□□□□ 0.76
LIME1-201ENST00000309546 CNOT8Q9UFF9 292 aaKnown RBP19.79■□□□□ 0.76
LIME1-201ENST00000309546 HS3ST3A1Q9Y663 406 aa19.79■□□□□ 0.76
LIME1-201ENST00000309546 MYLKQ15746 1914 aa19.78■□□□□ 0.76
LIME1-201ENST00000309546 FPGTO14772 594 aa19.78■□□□□ 0.76
LIME1-201ENST00000309546 INSIG1O15503 277 aa19.78■□□□□ 0.76
LIME1-201ENST00000309546 SPINT1O43278 529 aa19.78■□□□□ 0.76
LIME1-201ENST00000309546 PIAS2O75928 621 aa19.78■□□□□ 0.76
LIME1-201ENST00000309546 FTLP02792 175 aaPredicted RBP19.78■□□□□ 0.76
LIME1-201ENST00000309546 CDK4P11802 303 aa19.78■□□□□ 0.76
LIME1-201ENST00000309546 SKILP12757 684 aa19.78■□□□□ 0.76
LIME1-201ENST00000309546 JUPP14923 745 aa19.78■□□□□ 0.76
LIME1-201ENST00000309546 CYP4F3Q08477 520 aa19.78■□□□□ 0.76
LIME1-201ENST00000309546 IQCB1Q15051 598 aa19.78■□□□□ 0.76
LIME1-201ENST00000309546 CA9Q16790 459 aa19.78■□□□□ 0.76
LIME1-201ENST00000309546 PROX2Q3B8N5 592 aa19.78■□□□□ 0.76
LIME1-201ENST00000309546 INO80DQ53TQ3 878 aaPredicted RBP19.78■□□□□ 0.76
LIME1-201ENST00000309546 KDM7AQ6ZMT4 941 aa19.78■□□□□ 0.76
LIME1-201ENST00000309546 VOPP1Q96AW1 172 aa19.78■□□□□ 0.76
LIME1-201ENST00000309546 PEBP4Q96S96 227 aa19.78■□□□□ 0.76
LIME1-201ENST00000309546 C1QTNF2Q9BXJ5 285 aa19.78■□□□□ 0.76
LIME1-201ENST00000309546 TRIM7Q9C029 511 aa19.78■□□□□ 0.76
LIME1-201ENST00000309546 AIPL1Q9NZN9 384 aa19.78■□□□□ 0.76
LIME1-201ENST00000309546 LHX3Q9UBR4 397 aa19.78■□□□□ 0.76
LIME1-201ENST00000309546 IPO11Q9UI26 975 aaKnown RBP19.78■□□□□ 0.76
LIME1-201ENST00000309546 ANKRD36A6QL64 1941 aa19.77■□□□□ 0.76
LIME1-201ENST00000309546 SYCE3A1L190 88 aa19.77■□□□□ 0.76
LIME1-201ENST00000309546 TMEM191CA6NGB0 347 aa19.77■□□□□ 0.76
LIME1-201ENST00000309546 DDX3XO00571 662 aaKnown RBP eCLIP19.77■□□□□ 0.765e-9■■□□□ 12.7
LIME1-201ENST00000309546 DAPK3O43293 454 aa19.77■□□□□ 0.76
LIME1-201ENST00000309546 RNF8O76064 485 aa19.77■□□□□ 0.76
LIME1-201ENST00000309546 PIGNO95427 931 aa19.77■□□□□ 0.76
LIME1-201ENST00000309546 XPAP23025 273 aaPredicted RBP19.77■□□□□ 0.76
LIME1-201ENST00000309546 HTR7P34969 479 aa19.77■□□□□ 0.76
LIME1-201ENST00000309546 PRKCIP41743 596 aa19.77■□□□□ 0.76
LIME1-201ENST00000309546 RABIFP47224 123 aa19.77■□□□□ 0.76
LIME1-201ENST00000309546 ZNF211Q13398 564 aaPredicted RBP19.77■□□□□ 0.76
LIME1-201ENST00000309546 CAMK2BQ13554 666 aa19.77■□□□□ 0.76
LIME1-201ENST00000309546 PDE1CQ14123 709 aaPredicted RBP19.77■□□□□ 0.76
LIME1-201ENST00000309546 PPP6R3Q5H9R7 873 aaPredicted RBP19.77■□□□□ 0.76
LIME1-201ENST00000309546 DCP2Q8IU60 420 aaKnown RBP19.77■□□□□ 0.76
LIME1-201ENST00000309546 PDCD7Q8N8D1 485 aaKnown RBP19.77■□□□□ 0.76
LIME1-201ENST00000309546 OR4C6Q8NH72 309 aa19.77■□□□□ 0.76
LIME1-201ENST00000309546 KCTD15Q96SI1 283 aaPredicted RBP19.77■□□□□ 0.76
LIME1-201ENST00000309546 KLF6Q99612 283 aaPredicted RBP19.77■□□□□ 0.76
LIME1-201ENST00000309546 FUCA2Q9BTY2 467 aa19.77■□□□□ 0.76
LIME1-201ENST00000309546 DONSONQ9NYP3 566 aa19.77■□□□□ 0.76
LIME1-201ENST00000309546 MYO1AQ9UBC5 1043 aa19.77■□□□□ 0.76
LIME1-201ENST00000309546 RAXQ9Y2V3 346 aa19.77■□□□□ 0.76
LIME1-201ENST00000309546 FREM2Q5SZK8 3169 aa19.76■□□□□ 0.75
LIME1-201ENST00000309546 J3KR12 359 aa19.76■□□□□ 0.75
LIME1-201ENST00000309546 PRPSAP2O60256 369 aa19.76■□□□□ 0.75
LIME1-201ENST00000309546 MMP20O60882 483 aa19.76■□□□□ 0.75
LIME1-201ENST00000309546 GZMAP12544 262 aa19.76■□□□□ 0.75
LIME1-201ENST00000309546 ITIH2P19823 946 aa19.76■□□□□ 0.75
LIME1-201ENST00000309546 TPM4P67936 248 aa19.76■□□□□ 0.75
LIME1-201ENST00000309546 FZD2Q14332 565 aa19.76■□□□□ 0.75
LIME1-201ENST00000309546 CYTH1Q15438 398 aa19.76■□□□□ 0.75
LIME1-201ENST00000309546 TDRD12Q587J7 1177 aaKnown RBP19.76■□□□□ 0.75
LIME1-201ENST00000309546 ERMARDQ5T6L9 678 aa19.76■□□□□ 0.75
LIME1-201ENST00000309546 VPS36Q86VN1 386 aa19.76■□□□□ 0.75
LIME1-201ENST00000309546 PARGQ86W56 976 aa19.76■□□□□ 0.75
LIME1-201ENST00000309546 ARFGAP1Q8N6T3 406 aa19.76■□□□□ 0.75
LIME1-201ENST00000309546 DENND6BQ8NEG7 585 aa19.76■□□□□ 0.75
LIME1-201ENST00000309546 CXorf40AQ8TE69 158 aa19.76■□□□□ 0.75
LIME1-201ENST00000309546 WRAP53Q9BUR4 548 aaKnown RBP19.76■□□□□ 0.75
LIME1-201ENST00000309546 SLC39A8Q9C0K1 460 aa19.76■□□□□ 0.75
LIME1-201ENST00000309546 LRRC19Q9H756 370 aa19.76■□□□□ 0.75
LIME1-201ENST00000309546 PDFQ9HBH1 243 aa19.76■□□□□ 0.75
LIME1-201ENST00000309546 GPR27Q9NS67 375 aa19.76■□□□□ 0.75
LIME1-201ENST00000309546 LHX6Q9UPM6 363 aa19.76■□□□□ 0.75
LIME1-201ENST00000309546 SCINQ9Y6U3 715 aa19.76■□□□□ 0.75
LIME1-201ENST00000309546 LRRK1Q38SD2 2015 aa19.76■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms