RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 GSRP00390 522 aa15.01□□□□□ -0.01
CCDC88B-201ENST00000301897 CLCN1P35523 988 aa15.01□□□□□ -0.01
CCDC88B-201ENST00000301897 BLKP51451 505 aa15.01□□□□□ -0.01
CCDC88B-201ENST00000301897 SNRPD1P62314 119 aaKnown RBP15.01□□□□□ -0.01
CCDC88B-201ENST00000301897 EIF2B5Q13144 721 aaKnown RBP15.01□□□□□ -0.01
CCDC88B-201ENST00000301897 EIF3IQ13347 325 aaKnown RBP15.01□□□□□ -0.01
CCDC88B-201ENST00000301897 PRRT3Q5FWE3 981 aa15.01□□□□□ -0.01
CCDC88B-201ENST00000301897 ARCQ7LC44 396 aa15.01□□□□□ -0.01
CCDC88B-201ENST00000301897 CREBRFQ8IUR6 639 aa15.01□□□□□ -0.01
CCDC88B-201ENST00000301897 FAM71AQ8IYT1 594 aa15.01□□□□□ -0.01
CCDC88B-201ENST00000301897 PHACTR4Q8IZ21 702 aa15.01□□□□□ -0.01
CCDC88B-201ENST00000301897 SDR16C5Q8N3Y7 309 aa15.01□□□□□ -0.01
CCDC88B-201ENST00000301897 FSTL5Q8N475 847 aaPredicted RBP15.01□□□□□ -0.01
CCDC88B-201ENST00000301897 LIN37Q96GY3 246 aaPredicted RBP15.01□□□□□ -0.01
CCDC88B-201ENST00000301897 PRR11Q96HE9 360 aaPredicted RBP15.01□□□□□ -0.01
CCDC88B-201ENST00000301897 CCNL2Q96S94 520 aaPredicted RBP15.01□□□□□ -0.01
CCDC88B-201ENST00000301897 DNAJC12Q9UKB3 198 aa15.01□□□□□ -0.01
CCDC88B-201ENST00000301897 FCF1Q9Y324 198 aaKnown RBP15.01□□□□□ -0.01
CCDC88B-201ENST00000301897 SNX10Q9Y5X0 201 aa15.01□□□□□ -0.01
CCDC88B-201ENST00000301897 CHD5Q8TDI0 1954 aa15.01□□□□□ -0.01
CCDC88B-201ENST00000301897 PTPN13Q12923 2485 aa15.01□□□□□ -0.01
CCDC88B-201ENST00000301897 A0A1W2PNU3 283 aaPredicted RBP15□□□□□ -0.01
CCDC88B-201ENST00000301897 SPINT1O43278 529 aa15□□□□□ -0.01
CCDC88B-201ENST00000301897 TNFSF15O95150 251 aa15□□□□□ -0.01
CCDC88B-201ENST00000301897 LSM8O95777 96 aaKnown RBP15□□□□□ -0.01
CCDC88B-201ENST00000301897 MAPKAPK2P49137 400 aa15□□□□□ -0.01
CCDC88B-201ENST00000301897 ADKP55263 362 aaKnown RBP15□□□□□ -0.01
CCDC88B-201ENST00000301897 ARF5P84085 180 aa15□□□□□ -0.01
CCDC88B-201ENST00000301897 NRG1Q02297 640 aaPredicted RBP15□□□□□ -0.01
CCDC88B-201ENST00000301897 KCNC4Q03721 635 aa15□□□□□ -0.01
CCDC88B-201ENST00000301897 RAD51Q06609 339 aa15□□□□□ -0.01
CCDC88B-201ENST00000301897 ARL13BQ3SXY8 428 aa15□□□□□ -0.01
CCDC88B-201ENST00000301897 LVRNQ6Q4G3 990 aa15□□□□□ -0.01
CCDC88B-201ENST00000301897 MACC1Q6ZN28 852 aa15□□□□□ -0.01
CCDC88B-201ENST00000301897 XYLT1Q86Y38 959 aa15□□□□□ -0.01
CCDC88B-201ENST00000301897 SLC35F3Q8IY50 421 aa15□□□□□ -0.01
CCDC88B-201ENST00000301897 DRC7Q8IY82 874 aa15□□□□□ -0.01
CCDC88B-201ENST00000301897 RYBPQ8N488 228 aaPredicted RBP15□□□□□ -0.01
CCDC88B-201ENST00000301897 OR2AP1Q8NGE2 309 aa15□□□□□ -0.01
CCDC88B-201ENST00000301897 CENPTQ96BT3 561 aa15□□□□□ -0.01
CCDC88B-201ENST00000301897 TM6SF2Q9BZW4 377 aa15□□□□□ -0.01
CCDC88B-201ENST00000301897 SEMA4CQ9C0C4 833 aa15□□□□□ -0.01
CCDC88B-201ENST00000301897 MAGEH1Q9H213 219 aa15□□□□□ -0.01
CCDC88B-201ENST00000301897 ATXN7L1Q9ULK2 861 aaPredicted RBP15□□□□□ -0.01
CCDC88B-201ENST00000301897 PADI4Q9UM07 663 aa15□□□□□ -0.01
CCDC88B-201ENST00000301897 BOD1L1Q8NFC6 3051 aa14.99□□□□□ -0.01
CCDC88B-201ENST00000301897 ZSCAN5CA6NGD5 496 aaPredicted RBP14.99□□□□□ -0.01
CCDC88B-201ENST00000301897 TMEM110-MUSTN1A8MSY1 372 aa14.99□□□□□ -0.01
CCDC88B-201ENST00000301897 GCATO75600 419 aa14.99□□□□□ -0.01
CCDC88B-201ENST00000301897 ALPIP09923 528 aa14.99□□□□□ -0.01
CCDC88B-201ENST00000301897 FLT3P36888 993 aa14.99□□□□□ -0.01
CCDC88B-201ENST00000301897 ABL2P42684 1182 aa14.99□□□□□ -0.01
CCDC88B-201ENST00000301897 MTIF2P46199 727 aaKnown RBP14.99□□□□□ -0.01
CCDC88B-201ENST00000301897 APBA1Q02410 837 aa14.99□□□□□ -0.01
CCDC88B-201ENST00000301897 PPARDQ03181 441 aa14.99□□□□□ -0.01
CCDC88B-201ENST00000301897 CLN3Q13286 438 aa14.99□□□□□ -0.01
CCDC88B-201ENST00000301897 ELOCQ15369 112 aa14.99□□□□□ -0.01
CCDC88B-201ENST00000301897 PERM1Q5SV97 790 aa14.99□□□□□ -0.01
CCDC88B-201ENST00000301897 FAXCQ5TGI0 409 aa14.99□□□□□ -0.01
CCDC88B-201ENST00000301897 FOXR1Q6PIV2 292 aa14.99□□□□□ -0.01
CCDC88B-201ENST00000301897 BNIPLQ7Z465 357 aa14.99□□□□□ -0.01
CCDC88B-201ENST00000301897 OR6C4Q8NGE1 309 aa14.99□□□□□ -0.01
CCDC88B-201ENST00000301897 CXorf40AQ8TE69 158 aa14.99□□□□□ -0.01
CCDC88B-201ENST00000301897 ARHGEF2Q92974 986 aaKnown RBP14.99□□□□□ -0.01
CCDC88B-201ENST00000301897 CCDC3Q9BQI4 270 aa14.99□□□□□ -0.01
CCDC88B-201ENST00000301897 LRRC61Q9BV99 259 aa14.99□□□□□ -0.01
CCDC88B-201ENST00000301897 STRADBQ9C0K7 418 aa14.99□□□□□ -0.01
CCDC88B-201ENST00000301897 CAAP1Q9H8G2 361 aa14.99□□□□□ -0.01
CCDC88B-201ENST00000301897 PLCB1Q9NQ66 1216 aa14.99□□□□□ -0.01
CCDC88B-201ENST00000301897 DOLKQ9UPQ8 538 aa14.99□□□□□ -0.01
CCDC88B-201ENST00000301897 PCDHGA7Q9Y5G6 932 aa14.99□□□□□ -0.01
CCDC88B-201ENST00000301897 KRIT1O00522 736 aa14.98□□□□□ -0.01
CCDC88B-201ENST00000301897 NTN3O00634 580 aaPredicted RBP14.98□□□□□ -0.01
CCDC88B-201ENST00000301897 PLD2O14939 933 aa14.98□□□□□ -0.01
CCDC88B-201ENST00000301897 AREL1O15033 823 aa14.98□□□□□ -0.01
CCDC88B-201ENST00000301897 YY2O15391 372 aa14.98□□□□□ -0.01
CCDC88B-201ENST00000301897 TM7SF2O76062 418 aa14.98□□□□□ -0.01
CCDC88B-201ENST00000301897 UGT2B4P06133 528 aa14.98□□□□□ -0.01
CCDC88B-201ENST00000301897 RHOQP17081 205 aa14.98□□□□□ -0.01
CCDC88B-201ENST00000301897 PEX5P50542 639 aa14.98□□□□□ -0.01
CCDC88B-201ENST00000301897 SUOXP51687 545 aa14.98□□□□□ -0.01
CCDC88B-201ENST00000301897 MYLK3Q32MK0 819 aa14.98□□□□□ -0.01
CCDC88B-201ENST00000301897 ZSCAN23Q3MJ62 389 aa14.98□□□□□ -0.01
CCDC88B-201ENST00000301897 TPRG1LQ5T0D9 272 aa14.98□□□□□ -0.01
CCDC88B-201ENST00000301897 ARTNQ5T4W7 220 aa14.98□□□□□ -0.01
CCDC88B-201ENST00000301897 TTC7BQ86TV6 843 aa14.98□□□□□ -0.01
CCDC88B-201ENST00000301897 VPS36Q86VN1 386 aa14.98□□□□□ -0.01
CCDC88B-201ENST00000301897 FAM131BQ86XD5 332 aa14.98□□□□□ -0.01
CCDC88B-201ENST00000301897 RBFAQ8N0V3 343 aa14.98□□□□□ -0.01
CCDC88B-201ENST00000301897 ARL10Q8N8L6 244 aa14.98□□□□□ -0.01
CCDC88B-201ENST00000301897 CASKIN2Q8WXE0 1202 aa14.98□□□□□ -0.01
CCDC88B-201ENST00000301897 SIX2Q9NPC8 291 aa14.98□□□□□ -0.01
CCDC88B-201ENST00000301897 TMPRSS4Q9NRS4 437 aa14.98□□□□□ -0.01
CCDC88B-201ENST00000301897 OR12D3Q9UGF7 316 aa14.98□□□□□ -0.01
CCDC88B-201ENST00000301897 TMEM59LQ9UK28 342 aa14.98□□□□□ -0.01
CCDC88B-201ENST00000301897 UNC13CQ8NB66 2214 aa14.98□□□□□ -0.01
CCDC88B-201ENST00000301897 SLC28A2O43868 658 aa14.97□□□□□ -0.01
CCDC88B-201ENST00000301897 WISP1O95388 367 aa14.97□□□□□ -0.01
CCDC88B-201ENST00000301897 GJB6O95452 261 aa14.97□□□□□ -0.01
CCDC88B-201ENST00000301897 CD160O95971 181 aa14.97□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms