RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 SLC30A1Q9Y6M5 507 aa15.51■□□□□ 0.07
SHH-201ENST00000297261 ADAMTSL1Q8N6G6 1762 aa15.51■□□□□ 0.07
SHH-201ENST00000297261 TMEM63AO94886 807 aa15.51■□□□□ 0.07
SHH-201ENST00000297261 SEC24AO95486 1093 aa15.51■□□□□ 0.07
SHH-201ENST00000297261 AKT1P31749 480 aa15.51■□□□□ 0.07
SHH-201ENST00000297261 ZNF143P52747 638 aaPredicted RBP15.51■□□□□ 0.07
SHH-201ENST00000297261 PRKAA2P54646 552 aa15.51■□□□□ 0.07
SHH-201ENST00000297261 CSTF3Q12996 717 aaKnown RBP15.51■□□□□ 0.07
SHH-201ENST00000297261 GK5Q6ZS86 529 aa15.51■□□□□ 0.07
SHH-201ENST00000297261 FBXO30Q8TB52 745 aa15.51■□□□□ 0.07
SHH-201ENST00000297261 ITFG1Q8TB96 612 aa15.51■□□□□ 0.07
SHH-201ENST00000297261 LIN28AQ9H9Z2 209 aaKnown RBP15.51■□□□□ 0.07
SHH-201ENST00000297261 PMM2O15305 246 aa15.51■□□□□ 0.07
SHH-201ENST00000297261 LRCH4O75427 683 aa15.51■□□□□ 0.07
SHH-201ENST00000297261 SERPINI2O75830 405 aa15.51■□□□□ 0.07
SHH-201ENST00000297261 MYO1DO94832 1006 aa15.51■□□□□ 0.07
SHH-201ENST00000297261 POU1F1P28069 291 aa15.51■□□□□ 0.07
SHH-201ENST00000297261 YWHAZP63104 245 aaKnown RBP15.51■□□□□ 0.07
SHH-201ENST00000297261 MAPRE1Q15691 268 aaKnown RBP15.51■□□□□ 0.07
SHH-201ENST00000297261 CCL14Q16627 93 aa15.51■□□□□ 0.07
SHH-201ENST00000297261 PTPN20Q4JDL3 420 aa15.51■□□□□ 0.07
SHH-201ENST00000297261 LDLRAD1Q5T700 205 aa15.51■□□□□ 0.07
SHH-201ENST00000297261 C12orf29Q8N999 325 aa15.51■□□□□ 0.07
SHH-201ENST00000297261 SLC2A14Q8TDB8 520 aa15.51■□□□□ 0.07
SHH-201ENST00000297261 LPGAT1Q92604 370 aa15.51■□□□□ 0.07
SHH-201ENST00000297261 OSBPL6Q9BZF3 934 aa15.51■□□□□ 0.07
SHH-201ENST00000297261 SSU72Q9NP77 194 aaKnown RBP15.51■□□□□ 0.07
SHH-201ENST00000297261 RBM22Q9NW64 420 aaKnown RBP eCLIP15.51■□□□□ 0.07
SHH-201ENST00000297261 FAM95CA0A1B0GW59 222 aa15.51■□□□□ 0.07
SHH-201ENST00000297261 TTLL13PA6NNM8 815 aa15.51■□□□□ 0.07
SHH-201ENST00000297261 H3BSA7 217 aa15.51■□□□□ 0.07
SHH-201ENST00000297261 MTA2O94776 668 aa15.51■□□□□ 0.07
SHH-201ENST00000297261 DARSP14868 501 aaKnown RBP15.51■□□□□ 0.07
SHH-201ENST00000297261 ZNF792Q3KQV3 632 aa15.51■□□□□ 0.07
SHH-201ENST00000297261 TRMT10BQ6PF06 316 aaKnown RBP15.51■□□□□ 0.07
SHH-201ENST00000297261 RNF19BQ6ZMZ0 732 aa15.51■□□□□ 0.07
SHH-201ENST00000297261 ATG14Q6ZNE5 492 aa15.51■□□□□ 0.07
SHH-201ENST00000297261 MON1BQ7L1V2 547 aa15.51■□□□□ 0.07
SHH-201ENST00000297261 SLC41A1Q8IVJ1 513 aa15.51■□□□□ 0.07
SHH-201ENST00000297261 SLC22A9Q8IVM8 553 aa15.51■□□□□ 0.07
SHH-201ENST00000297261 FNDC5Q8NAU1 212 aa15.51■□□□□ 0.07
SHH-201ENST00000297261 NPLOC4Q8TAT6 608 aa15.51■□□□□ 0.07
SHH-201ENST00000297261 DEPDC7Q96QD5 511 aa15.51■□□□□ 0.07
SHH-201ENST00000297261 PRDM12Q9H4Q4 367 aa15.51■□□□□ 0.07
SHH-201ENST00000297261 DDX43Q9NXZ2 648 aaKnown RBP15.51■□□□□ 0.07
SHH-201ENST00000297261 LOC100506127A0A0U1RQW1 187 aa15.5■□□□□ 0.07
SHH-201ENST00000297261 TRIM24O15164 1050 aa15.5■□□□□ 0.07
SHH-201ENST00000297261 FAM20BO75063 409 aa15.5■□□□□ 0.07
SHH-201ENST00000297261 MT-ND1P03886 318 aa15.5■□□□□ 0.07
SHH-201ENST00000297261 ST13P50502 369 aaKnown RBP15.5■□□□□ 0.07
SHH-201ENST00000297261 MAP3K7CLP57077 242 aa15.5■□□□□ 0.07
SHH-201ENST00000297261 CCDC142Q17RM4 750 aa15.5■□□□□ 0.07
SHH-201ENST00000297261 KLHDC10Q6PID8 442 aa15.5■□□□□ 0.07
SHH-201ENST00000297261 DEFB106AQ8N104 65 aa15.5■□□□□ 0.07
SHH-201ENST00000297261 ENDOVQ8N8Q3 282 aaKnown RBP15.5■□□□□ 0.07
SHH-201ENST00000297261 SLC7A6OSQ96CW6 309 aaPredicted RBP15.5■□□□□ 0.07
SHH-201ENST00000297261 PTCD3Q96EY7 689 aaKnown RBP15.5■□□□□ 0.07
SHH-201ENST00000297261 ASIC4Q96FT7 647 aa15.5■□□□□ 0.07
SHH-201ENST00000297261 RIBC2Q9H4K1 309 aa15.5■□□□□ 0.07
SHH-201ENST00000297261 CATSPERBQ9H7T0 1116 aa15.5■□□□□ 0.07
SHH-201ENST00000297261 TRIM39Q9HCM9 518 aa15.5■□□□□ 0.07
SHH-201ENST00000297261 UBAP1Q9NZ09 502 aa15.5■□□□□ 0.07
SHH-201ENST00000297261 SMIM35A0A1B0GVV1 85 aa15.5■□□□□ 0.07
SHH-201ENST00000297261 PDZK1P1A8MUH7 402 aa15.5■□□□□ 0.07
SHH-201ENST00000297261 CRTAMO95727 393 aa15.5■□□□□ 0.07
SHH-201ENST00000297261 ODC1P11926 461 aa15.5■□□□□ 0.07
SHH-201ENST00000297261 SOX6P35712 828 aa15.5■□□□□ 0.07
SHH-201ENST00000297261 TARBP2Q15633 366 aaKnown RBP15.5■□□□□ 0.07
SHH-201ENST00000297261 ZRANB3Q5FWF4 1079 aa15.5■□□□□ 0.07
SHH-201ENST00000297261 SPANXN2Q5MJ10 180 aa15.5■□□□□ 0.07
SHH-201ENST00000297261 PTRHD1Q6GMV3 140 aaKnown RBP15.5■□□□□ 0.07
SHH-201ENST00000297261 PRMT9Q6P2P2 845 aa15.5■□□□□ 0.07
SHH-201ENST00000297261 SIX5Q8N196 739 aa15.5■□□□□ 0.07
SHH-201ENST00000297261 C18orf25Q96B23 403 aaPredicted RBP15.5■□□□□ 0.07
SHH-201ENST00000297261 ADAM7Q9H2U9 754 aa15.5■□□□□ 0.07
SHH-201ENST00000297261 CACNA2D2Q9NY47 1150 aa15.5■□□□□ 0.07
SHH-201ENST00000297261 PNMA8BQ9ULN7 279 aaPredicted RBP15.5■□□□□ 0.07
SHH-201ENST00000297261 SLC8A2Q9UPR5 921 aa15.5■□□□□ 0.07
SHH-201ENST00000297261 DGKBQ9Y6T7 804 aa15.5■□□□□ 0.07
SHH-201ENST00000297261 MATN2O00339 956 aa15.5■□□□□ 0.07
SHH-201ENST00000297261 RAD51BO15315 384 aa15.5■□□□□ 0.07
SHH-201ENST00000297261 SYNCRIPO60506 623 aaKnown RBP15.5■□□□□ 0.07
SHH-201ENST00000297261 SLC6A3Q01959 620 aa15.5■□□□□ 0.07
SHH-201ENST00000297261 SNX17Q15036 470 aa15.5■□□□□ 0.07
SHH-201ENST00000297261 ARMCX4Q5H9R4 360 aa15.5■□□□□ 0.07
SHH-201ENST00000297261 FAM120BQ96EK7 910 aaKnown RBP15.5■□□□□ 0.07
SHH-201ENST00000297261 CNMDO75829 334 aa15.49■□□□□ 0.07
SHH-201ENST00000297261 TRAF3Q13114 568 aa15.49■□□□□ 0.07
SHH-201ENST00000297261 SFT2D3Q587I9 215 aa15.49■□□□□ 0.07
SHH-201ENST00000297261 UBAP2Q5T6F2 1119 aaKnown RBP15.49■□□□□ 0.07
SHH-201ENST00000297261 GALNT18Q6P9A2 607 aa15.49■□□□□ 0.07
SHH-201ENST00000297261 SPESP1Q6UW49 350 aa15.49■□□□□ 0.07
SHH-201ENST00000297261 LMO3Q8TAP4 145 aa15.49■□□□□ 0.07
SHH-201ENST00000297261 STRA6Q9BX79 667 aa15.49■□□□□ 0.07
SHH-201ENST00000297261 TJP2Q9UDY2 1190 aa15.49■□□□□ 0.07
SHH-201ENST00000297261 COQ6Q9Y2Z9 468 aa15.49■□□□□ 0.07
SHH-201ENST00000297261 CCDC154A6NI56 674 aa15.49■□□□□ 0.07
SHH-201ENST00000297261 GAD2Q05329 585 aa15.49■□□□□ 0.07
SHH-201ENST00000297261 RRM2BQ7LG56 351 aa15.49■□□□□ 0.07
SHH-201ENST00000297261 EDEM1Q92611 657 aa15.49■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 58.1 ms