RNA–Protein interactions for RNA: ENST00000292535.11

CUX1-201, Transcript of cut like homeobox 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CUX1, Length 13,747 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-201ENST00000292535 GATBO75879 557 aaKnown RBP9.41□□□□□ -0.9
CUX1-201ENST00000292535 MIIPQ5JXC2 388 aa9.41□□□□□ -0.9
CUX1-201ENST00000292535 TTC27Q6P3X3 843 aa9.41□□□□□ -0.9
CUX1-201ENST00000292535 FNDC11Q9BVV2 318 aa9.41□□□□□ -0.9
CUX1-201ENST00000292535 SMURF2Q9HAU4 748 aa9.41□□□□□ -0.9
CUX1-201ENST00000292535 ZNF222Q9UK12 451 aa9.41□□□□□ -0.9
CUX1-201ENST00000292535 KCNQ2O43526 872 aa9.41□□□□□ -0.9
CUX1-201ENST00000292535 ARF5P84085 180 aa9.41□□□□□ -0.9
CUX1-201ENST00000292535 SLC34A1Q06495 639 aa9.41□□□□□ -0.9
CUX1-201ENST00000292535 STAG3L4Q8TBR4 150 aa9.41□□□□□ -0.9
CUX1-201ENST00000292535 ELMO1Q92556 727 aa9.41□□□□□ -0.9
CUX1-201ENST00000292535 POP1Q99575 1024 aaKnown RBP9.41□□□□□ -0.9
CUX1-201ENST00000292535 IRX2Q9BZI1 471 aaPredicted RBP9.41□□□□□ -0.9
CUX1-201ENST00000292535 TOR4AQ9NXH8 423 aa9.41□□□□□ -0.9
CUX1-201ENST00000292535 KCNT2Q6UVM3 1135 aa9.41□□□□□ -0.9
CUX1-201ENST00000292535 ZNF34Q8IZ26 560 aa9.41□□□□□ -0.9
CUX1-201ENST00000292535 KBTBD7Q8WVZ9 684 aa9.41□□□□□ -0.9
CUX1-201ENST00000292535 WNT8BQ93098 351 aa9.41□□□□□ -0.9
CUX1-201ENST00000292535 ZNF184Q99676 751 aaPredicted RBP9.41□□□□□ -0.9
CUX1-201ENST00000292535 ACE2Q9BYF1 805 aaPredicted RBP9.41□□□□□ -0.9
CUX1-201ENST00000292535 PDGFDQ9GZP0 370 aaPredicted RBP9.41□□□□□ -0.9
CUX1-201ENST00000292535 SPATA31A1Q5TZJ5 1347 aa9.41□□□□□ -0.9
CUX1-201ENST00000292535 WRBO00258 174 aa9.41□□□□□ -0.9
CUX1-201ENST00000292535 POLD2P49005 469 aa9.41□□□□□ -0.9
CUX1-201ENST00000292535 NDST1P52848 882 aa9.41□□□□□ -0.9
CUX1-201ENST00000292535 NR1D2Q14995 579 aa9.41□□□□□ -0.9
CUX1-201ENST00000292535 TCHHL1Q5QJ38 904 aaPredicted RBP9.41□□□□□ -0.9
CUX1-201ENST00000292535 DAW1Q8N136 415 aa9.41□□□□□ -0.9
CUX1-201ENST00000292535 CDC42EP4Q9H3Q1 356 aaKnown RBP9.41□□□□□ -0.9
CUX1-201ENST00000292535 PSMD13Q9UNM6 376 aa9.41□□□□□ -0.9
CUX1-201ENST00000292535 USP31Q70CQ4 1352 aa9.41□□□□□ -0.9
CUX1-201ENST00000292535 KDM6BO15054 1643 aa9.41□□□□□ -0.9
CUX1-201ENST00000292535 HAT1O14929 419 aa9.4□□□□□ -0.9
CUX1-201ENST00000292535 BDNFP23560 247 aa9.4□□□□□ -0.9
CUX1-201ENST00000292535 PFKFB4Q16877 469 aa9.4□□□□□ -0.9
CUX1-201ENST00000292535 TKTL2Q9H0I9 626 aa9.4□□□□□ -0.9
CUX1-201ENST00000292535 EPB41L4AQ9HCS5 686 aaPredicted RBP9.4□□□□□ -0.9
CUX1-201ENST00000292535 CPS1P31327 1500 aa9.4□□□□□ -0.9
CUX1-201ENST00000292535 UBE2Q2LH0YL09 131 aa9.4□□□□□ -0.9
CUX1-201ENST00000292535 SIN3BO75182 1162 aa9.4□□□□□ -0.9
CUX1-201ENST00000292535 QPRTQ15274 297 aa9.4□□□□□ -0.9
CUX1-201ENST00000292535 SPATA20Q8TB22 786 aa9.4□□□□□ -0.9
CUX1-201ENST00000292535 DCUN1D5Q9BTE7 237 aa9.4□□□□□ -0.9
CUX1-201ENST00000292535 CLTCL1P53675 1640 aa9.4□□□□□ -0.9
CUX1-201ENST00000292535 LOC100506127A0A0U1RQW1 187 aa9.4□□□□□ -0.9
CUX1-201ENST00000292535 ADSLP30566 484 aaPredicted RBP9.4□□□□□ -0.9
CUX1-201ENST00000292535 RRP1BQ14684 758 aaKnown RBP9.4□□□□□ -0.9
CUX1-201ENST00000292535 EDEM1Q92611 657 aa9.4□□□□□ -0.9
CUX1-201ENST00000292535 SPAG4Q9NPE6 437 aa9.4□□□□□ -0.9
CUX1-201ENST00000292535 PRDM8Q9NQV8 689 aa9.4□□□□□ -0.9
CUX1-201ENST00000292535 RASSF1Q9NS23 344 aa9.4□□□□□ -0.9
CUX1-201ENST00000292535 KCNK4Q9NYG8 393 aa9.4□□□□□ -0.9
CUX1-201ENST00000292535 GMIPQ9P107 970 aa9.4□□□□□ -0.9
CUX1-201ENST00000292535 GMPPBQ9Y5P6 360 aa9.4□□□□□ -0.9
CUX1-201ENST00000292535 HSF2Q03933 536 aa9.4□□□□□ -0.9
CUX1-201ENST00000292535 PPP1R15BQ5SWA1 713 aa9.4□□□□□ -0.9
CUX1-201ENST00000292535 OAFQ86UD1 273 aa9.4□□□□□ -0.9
CUX1-201ENST00000292535 UNC93AQ86WB7 457 aa9.4□□□□□ -0.9
CUX1-201ENST00000292535 IGFLR1Q9H665 355 aa9.4□□□□□ -0.9
CUX1-201ENST00000292535 GPN1Q9HCN4 374 aaPredicted RBP9.4□□□□□ -0.9
CUX1-201ENST00000292535 ELOVL2Q9NXB9 296 aa9.4□□□□□ -0.9
CUX1-201ENST00000292535 ZNF780BQ9Y6R6 833 aa9.4□□□□□ -0.9
CUX1-201ENST00000292535 NRCAMQ92823 1304 aa9.4□□□□□ -0.9
CUX1-201ENST00000292535 SLC2A14Q8TDB8 520 aa9.4□□□□□ -0.9
CUX1-201ENST00000292535 SCAF8Q9UPN6 1271 aaKnown RBP9.4□□□□□ -0.9
CUX1-201ENST00000292535 ATP5F1P24539 256 aaPredicted RBP9.4□□□□□ -0.9
CUX1-201ENST00000292535 CCR3P51677 355 aa9.4□□□□□ -0.9
CUX1-201ENST00000292535 OFCC1Q8IZS5 231 aa9.4□□□□□ -0.9
CUX1-201ENST00000292535 UNKQ9C0B0 810 aaKnown RBP9.4□□□□□ -0.9
CUX1-201ENST00000292535 FAM86C2PA6NEL3 165 aa9.4□□□□□ -0.9
CUX1-201ENST00000292535 OTCP00480 354 aa9.4□□□□□ -0.9
CUX1-201ENST00000292535 YBX3P16989 372 aaKnown RBP eCLIP9.4□□□□□ -0.95e-6■■■□□ 19.1
CUX1-201ENST00000292535 RAB25P57735 213 aa9.4□□□□□ -0.9
CUX1-201ENST00000292535 GCNT1Q02742 428 aa9.4□□□□□ -0.9
CUX1-201ENST00000292535 SAR1AQ9NR31 198 aa9.4□□□□□ -0.9
CUX1-201ENST00000292535 IQCMA0A1B0GVH7 501 aa9.4□□□□□ -0.9
CUX1-201ENST00000292535 FAM25EA8MYX2 175 aa9.4□□□□□ -0.9
CUX1-201ENST00000292535 FCHO1O14526 889 aa9.4□□□□□ -0.9
CUX1-201ENST00000292535 OR8D1Q8WZ84 308 aa9.4□□□□□ -0.9
CUX1-201ENST00000292535 APOL2Q9BQE5 337 aa9.4□□□□□ -0.9
CUX1-201ENST00000292535 C1QTNF1Q9BXJ1 281 aa9.4□□□□□ -0.9
CUX1-201ENST00000292535 IFNGP01579 166 aa9.4□□□□□ -0.91
CUX1-201ENST00000292535 ACTR3P61158 418 aa9.4□□□□□ -0.91
CUX1-201ENST00000292535 AP5B1Q2VPB7 878 aa9.4□□□□□ -0.91
CUX1-201ENST00000292535 MPPE1Q53F39 396 aa9.4□□□□□ -0.91
CUX1-201ENST00000292535 PROSER1Q86XN7 944 aa9.4□□□□□ -0.91
CUX1-201ENST00000292535 REXO1L1PQ8IX06 675 aa9.4□□□□□ -0.91
CUX1-201ENST00000292535 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP9.4□□□□□ -0.911e-6■■■■□ 23.3
CUX1-201ENST00000292535 SYNPO2Q9UMS6 1093 aa9.4□□□□□ -0.91
CUX1-201ENST00000292535 PCDHB9Q9Y5E1 797 aa9.4□□□□□ -0.91
CUX1-201ENST00000292535 N6AMT1Q9Y5N5 214 aa9.4□□□□□ -0.91
CUX1-201ENST00000292535 GTF3C1Q12789 2109 aa9.4□□□□□ -0.91
CUX1-201ENST00000292535 MED14O60244 1454 aa9.4□□□□□ -0.91
CUX1-201ENST00000292535 SLC37A4O43826 429 aa9.4□□□□□ -0.91
CUX1-201ENST00000292535 THOC7Q6I9Y2 204 aaKnown RBP9.4□□□□□ -0.91
CUX1-201ENST00000292535 EMC1Q8N766 993 aa9.4□□□□□ -0.91
CUX1-201ENST00000292535 LRRC7Q96NW7 1537 aa9.4□□□□□ -0.91
CUX1-201ENST00000292535 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP9.4□□□□□ -0.91
CUX1-201ENST00000292535 OR10H3O60404 316 aa9.4□□□□□ -0.91
CUX1-201ENST00000292535 MGAT1P26572 445 aa9.4□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms