RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 NRG1Q02297 640 aaPredicted RBP20.29■□□□□ 0.84
VPS53-201ENST00000291074 DSC2Q02487 901 aa20.29■□□□□ 0.84
VPS53-201ENST00000291074 MSANTD2Q6P1R3 559 aa20.29■□□□□ 0.84
VPS53-201ENST00000291074 CNSTQ6PJW8 725 aa20.29■□□□□ 0.84
VPS53-201ENST00000291074 IGSF8Q969P0 613 aa20.29■□□□□ 0.84
VPS53-201ENST00000291074 ANKRD27Q96NW4 1050 aa20.29■□□□□ 0.84
VPS53-201ENST00000291074 GPR78Q96P69 363 aa20.29■□□□□ 0.84
VPS53-201ENST00000291074 DRC3Q9H069 523 aa20.29■□□□□ 0.84
VPS53-201ENST00000291074 PRDM5Q9NQX1 630 aaPredicted RBP20.29■□□□□ 0.84
VPS53-201ENST00000291074 HCSTQ9UBK5 93 aa20.29■□□□□ 0.84
VPS53-201ENST00000291074 SLC27A5Q9Y2P5 690 aa20.29■□□□□ 0.84
VPS53-201ENST00000291074 TLL2Q9Y6L7 1015 aa20.29■□□□□ 0.84
VPS53-201ENST00000291074 CCL22O00626 93 aa20.29■□□□□ 0.84
VPS53-201ENST00000291074 TADA2AO75478 443 aa20.29■□□□□ 0.84
VPS53-201ENST00000291074 APOA4P06727 396 aa20.29■□□□□ 0.84
VPS53-201ENST00000291074 RAP1GAP2Q684P5 730 aa20.29■□□□□ 0.84
VPS53-201ENST00000291074 TMC7Q7Z402 723 aa20.29■□□□□ 0.84
VPS53-201ENST00000291074 C2CD4AQ8NCU7 369 aaPredicted RBP20.29■□□□□ 0.84
VPS53-201ENST00000291074 PSMG2Q969U7 264 aa20.29■□□□□ 0.84
VPS53-201ENST00000291074 C1orf74Q96LT6 269 aa20.29■□□□□ 0.84
VPS53-201ENST00000291074 TCF7L2Q9NQB0 619 aa20.29■□□□□ 0.84
VPS53-201ENST00000291074 MID2Q9UJV3 735 aa20.29■□□□□ 0.84
VPS53-201ENST00000291074 FBXO5Q9UKT4 447 aa20.29■□□□□ 0.84
VPS53-201ENST00000291074 WASH4PA8MWX3 477 aa20.28■□□□□ 0.84
VPS53-201ENST00000291074 F8W8V4 182 aa20.28■□□□□ 0.84
VPS53-201ENST00000291074 GJB3O75712 270 aa20.28■□□□□ 0.84
VPS53-201ENST00000291074 CABYRO75952 493 aa20.28■□□□□ 0.84
VPS53-201ENST00000291074 EOMESO95936 686 aa20.28■□□□□ 0.84
VPS53-201ENST00000291074 JUNP05412 331 aaKnown RBP20.28■□□□□ 0.84
VPS53-201ENST00000291074 EPHA3P29320 983 aa20.28■□□□□ 0.84
VPS53-201ENST00000291074 CUL3Q13618 768 aa20.28■□□□□ 0.84
VPS53-201ENST00000291074 NFE2Q16621 373 aaPredicted RBP20.28■□□□□ 0.84
VPS53-201ENST00000291074 CTXN3Q4LDR2 81 aa20.28■□□□□ 0.84
VPS53-201ENST00000291074 TSTD2Q5T7W7 516 aa20.28■□□□□ 0.84
VPS53-201ENST00000291074 KIAA0930Q6ICG6 404 aaPredicted RBP20.28■□□□□ 0.84
VPS53-201ENST00000291074 UMODL1-AS1Q8N2C9 162 aa20.28■□□□□ 0.84
VPS53-201ENST00000291074 RDH11Q8TC12 318 aa20.28■□□□□ 0.84
VPS53-201ENST00000291074 SCG3Q8WXD2 468 aaKnown RBP20.28■□□□□ 0.84
VPS53-201ENST00000291074 C8orf48Q96LL4 319 aa20.28■□□□□ 0.84
VPS53-201ENST00000291074 ZYG11BQ9C0D3 744 aa20.28■□□□□ 0.84
VPS53-201ENST00000291074 SLC25A51Q9H1U9 297 aa20.28■□□□□ 0.84
VPS53-201ENST00000291074 DONSONQ9NYP3 566 aa20.28■□□□□ 0.84
VPS53-201ENST00000291074 ZDHHC2Q9UIJ5 367 aa20.28■□□□□ 0.84
VPS53-201ENST00000291074 PCDHB5Q9Y5E4 795 aa20.28■□□□□ 0.84
VPS53-201ENST00000291074 MATN2O00339 956 aa20.28■□□□□ 0.84
VPS53-201ENST00000291074 H2AFYO75367 372 aaKnown RBP20.28■□□□□ 0.84
VPS53-201ENST00000291074 CD151P48509 253 aa20.28■□□□□ 0.84
VPS53-201ENST00000291074 GATMP50440 423 aa20.28■□□□□ 0.84
VPS53-201ENST00000291074 KLF10Q13118 480 aa20.28■□□□□ 0.84
VPS53-201ENST00000291074 TSNAXIP1Q2TAA8 658 aa20.28■□□□□ 0.84
VPS53-201ENST00000291074 C6orf163Q5TEZ5 329 aa20.28■□□□□ 0.84
VPS53-201ENST00000291074 NEPROQ6NW34 567 aa20.28■□□□□ 0.84
VPS53-201ENST00000291074 LSMEM2Q8N112 164 aa20.28■□□□□ 0.84
VPS53-201ENST00000291074 PTCD2Q8WV60 388 aaKnown RBP20.28■□□□□ 0.84
VPS53-201ENST00000291074 IMP4Q96G21 291 aaKnown RBP20.28■□□□□ 0.84
VPS53-201ENST00000291074 FAM193BQ96PV7 902 aaPredicted RBP20.28■□□□□ 0.84
VPS53-201ENST00000291074 NUF2Q9BZD4 464 aa20.28■□□□□ 0.84
VPS53-201ENST00000291074 FBXO44Q9H4M3 255 aa20.28■□□□□ 0.84
VPS53-201ENST00000291074 MRM3Q9HC36 420 aaKnown RBP20.28■□□□□ 0.84
VPS53-201ENST00000291074 RAP2CQ9Y3L5 183 aa20.28■□□□□ 0.84
VPS53-201ENST00000291074 PAMP19021 973 aa20.27■□□□□ 0.84
VPS53-201ENST00000291074 GCKP35557 465 aa20.27■□□□□ 0.84
VPS53-201ENST00000291074 FAM171A1Q5VUB5 890 aa20.27■□□□□ 0.84
VPS53-201ENST00000291074 RNF180Q86T96 592 aa20.27■□□□□ 0.84
VPS53-201ENST00000291074 MYLK4Q86YV6 388 aaPredicted RBP20.27■□□□□ 0.84
VPS53-201ENST00000291074 CCDC117Q8IWD4 279 aaPredicted RBP20.27■□□□□ 0.84
VPS53-201ENST00000291074 FBXO32Q969P5 355 aa20.27■□□□□ 0.84
VPS53-201ENST00000291074 CCDC124Q96CT7 223 aaKnown RBP20.27■□□□□ 0.84
VPS53-201ENST00000291074 FUBP3Q96I24 572 aaKnown RBP eCLIP20.27■□□□□ 0.84
VPS53-201ENST00000291074 UBE2OQ9C0C9 1292 aaKnown RBP20.27■□□□□ 0.84
VPS53-201ENST00000291074 CRISPLD1Q9H336 500 aa20.27■□□□□ 0.84
VPS53-201ENST00000291074 SP110Q9HB58 689 aa20.27■□□□□ 0.84
VPS53-201ENST00000291074 NEMP2A6NFY4 417 aa20.27■□□□□ 0.83
VPS53-201ENST00000291074 TMEM189-UBE2V1I3L0A0 370 aa20.27■□□□□ 0.83
VPS53-201ENST00000291074 GRID2O43424 1007 aa20.27■□□□□ 0.83
VPS53-201ENST00000291074 MMP2P08253 660 aa20.27■□□□□ 0.83
VPS53-201ENST00000291074 PDHA1P08559 390 aa20.27■□□□□ 0.83
VPS53-201ENST00000291074 RHOQP17081 205 aa20.27■□□□□ 0.83
VPS53-201ENST00000291074 ITGAXP20702 1163 aa20.27■□□□□ 0.83
VPS53-201ENST00000291074 SERPINB5P36952 375 aa20.27■□□□□ 0.83
VPS53-201ENST00000291074 ETFBP38117 255 aa20.27■□□□□ 0.83
VPS53-201ENST00000291074 RPL14P50914 215 aaKnown RBP20.27■□□□□ 0.83
VPS53-201ENST00000291074 HNRNPDQ14103 355 aaKnown RBP20.27■□□□□ 0.83
VPS53-201ENST00000291074 FBXL22Q6P050 247 aa20.27■□□□□ 0.83
VPS53-201ENST00000291074 CCNYL1Q8N7R7 359 aa20.27■□□□□ 0.83
VPS53-201ENST00000291074 CMTM5Q96DZ9 223 aa20.27■□□□□ 0.83
VPS53-201ENST00000291074 MYEOVQ96EZ4 313 aa20.27■□□□□ 0.83
VPS53-201ENST00000291074 GPR62Q9BZJ7 368 aa20.27■□□□□ 0.83
VPS53-201ENST00000291074 PPM1HQ9ULR3 514 aa20.27■□□□□ 0.83
VPS53-201ENST00000291074 SQORQ9Y6N5 450 aa20.27■□□□□ 0.83
VPS53-201ENST00000291074 COX4I1P13073 169 aa20.26■□□□□ 0.83
VPS53-201ENST00000291074 GLDCP23378 1020 aa20.26■□□□□ 0.83
VPS53-201ENST00000291074 MARC1Q5VT66 337 aa20.26■□□□□ 0.83
VPS53-201ENST00000291074 KBTBD2Q8IY47 623 aa20.26■□□□□ 0.83
VPS53-201ENST00000291074 DEFB107AQ8IZN7 70 aa20.26■□□□□ 0.83
VPS53-201ENST00000291074 HEXDCQ8WVB3 486 aa20.26■□□□□ 0.83
VPS53-201ENST00000291074 OLFM1Q99784 485 aa20.26■□□□□ 0.83
VPS53-201ENST00000291074 TMEM248Q9NWD8 314 aa20.26■□□□□ 0.83
VPS53-201ENST00000291074 GREB1Q4ZG55 1949 aa20.26■□□□□ 0.83
VPS53-201ENST00000291074 TMEM233B4DJY2 109 aa20.26■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms