RNA–Protein interactions for RNA: ENST00000263708.6

PTPN4-201, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN4, Length 10,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-201ENST00000263708 CDC42EP4Q9H3Q1 356 aaKnown RBP11.47□□□□□ -0.57
PTPN4-201ENST00000263708 ALG9Q9H6U8 611 aa11.47□□□□□ -0.57
PTPN4-201ENST00000263708 MORF4L1Q9UBU8 362 aa11.47□□□□□ -0.57
PTPN4-201ENST00000263708 OVOS2A0A0G2JMS6 1433 aa11.47□□□□□ -0.57
PTPN4-201ENST00000263708 OVOS2A0A0J9YW53 1432 aa11.47□□□□□ -0.57
PTPN4-201ENST00000263708 OVOS2Q6IE36 1432 aa11.47□□□□□ -0.57
PTPN4-201ENST00000263708 ATP7BP35670 1465 aa11.47□□□□□ -0.57
PTPN4-201ENST00000263708 LOC110117498-PIK3R3F6TDL0 507 aa11.47□□□□□ -0.57
PTPN4-201ENST00000263708 LTKP29376 864 aa11.47□□□□□ -0.57
PTPN4-201ENST00000263708 RGS21Q2M5E4 152 aa11.47□□□□□ -0.57
PTPN4-201ENST00000263708 HSDL1Q3SXM5 330 aa11.47□□□□□ -0.57
PTPN4-201ENST00000263708 ERICH5Q6P6B1 374 aa11.47□□□□□ -0.57
PTPN4-201ENST00000263708 PIK3R3Q92569 461 aa11.47□□□□□ -0.57
PTPN4-201ENST00000263708 CCDC59Q9P031 241 aaKnown RBP11.47□□□□□ -0.57
PTPN4-201ENST00000263708 GULP1Q9UBP9 304 aa11.47□□□□□ -0.57
PTPN4-201ENST00000263708 NPHP4O75161 1426 aaPredicted RBP11.47□□□□□ -0.57
PTPN4-201ENST00000263708 CYB5AP00167 134 aa11.47□□□□□ -0.57
PTPN4-201ENST00000263708 CXCL8P10145 99 aa11.47□□□□□ -0.57
PTPN4-201ENST00000263708 NR2C2P49116 596 aa11.47□□□□□ -0.57
PTPN4-201ENST00000263708 CYP3A43Q9HB55 503 aa11.47□□□□□ -0.57
PTPN4-201ENST00000263708 IL1R1P14778 569 aa11.47□□□□□ -0.57
PTPN4-201ENST00000263708 FXR1P51114 621 aaKnown RBP eCLIP11.47□□□□□ -0.57
PTPN4-201ENST00000263708 SNRPD1P62314 119 aaKnown RBP11.47□□□□□ -0.57
PTPN4-201ENST00000263708 LAMTOR4Q0VGL1 99 aa11.47□□□□□ -0.57
PTPN4-201ENST00000263708 SATL1Q86VE3 508 aa11.47□□□□□ -0.57
PTPN4-201ENST00000263708 OXNAD1Q96HP4 312 aaPredicted RBP11.47□□□□□ -0.57
PTPN4-201ENST00000263708 ZNF607Q96SK3 696 aa11.47□□□□□ -0.57
PTPN4-201ENST00000263708 CORO1BQ9BR76 489 aa11.47□□□□□ -0.57
PTPN4-201ENST00000263708 TMCO1Q9UM00 188 aa11.47□□□□□ -0.57
PTPN4-201ENST00000263708 ARHGEF33A8MVX0 844 aa11.47□□□□□ -0.57
PTPN4-201ENST00000263708 SERPINE1P05121 402 aa11.47□□□□□ -0.57
PTPN4-201ENST00000263708 SMIM11AP58511 58 aa11.47□□□□□ -0.57
PTPN4-201ENST00000263708 PTCHD4Q6ZW05 846 aa11.47□□□□□ -0.57
PTPN4-201ENST00000263708 SERPINB11Q96P15 392 aa11.47□□□□□ -0.57
PTPN4-201ENST00000263708 ALDH8A1Q9H2A2 487 aaPredicted RBP11.47□□□□□ -0.57
PTPN4-201ENST00000263708 PLGRKTQ9HBL7 147 aa11.47□□□□□ -0.57
PTPN4-201ENST00000263708 SETD4Q9NVD3 440 aa11.47□□□□□ -0.57
PTPN4-201ENST00000263708 SLC27A6Q9Y2P4 619 aa11.47□□□□□ -0.57
PTPN4-201ENST00000263708 OAS3Q9Y6K5 1087 aaKnown RBP11.47□□□□□ -0.57
PTPN4-201ENST00000263708 FOXN3O00409 490 aaPredicted RBP11.47□□□□□ -0.57
PTPN4-201ENST00000263708 ERAL1O75616 437 aaKnown RBP11.47□□□□□ -0.57
PTPN4-201ENST00000263708 ACTR3P61158 418 aa11.47□□□□□ -0.57
PTPN4-201ENST00000263708 MRPS22P82650 360 aaKnown RBP11.47□□□□□ -0.57
PTPN4-201ENST00000263708 SNX32Q86XE0 403 aa11.47□□□□□ -0.57
PTPN4-201ENST00000263708 SCUBE3Q8IX30 993 aa11.47□□□□□ -0.57
PTPN4-201ENST00000263708 ACE2Q9BYF1 805 aaPredicted RBP11.47□□□□□ -0.57
PTPN4-201ENST00000263708 IKZF2Q9UKS7 526 aa11.47□□□□□ -0.57
PTPN4-201ENST00000263708 QSOX1O00391 747 aa11.47□□□□□ -0.57
PTPN4-201ENST00000263708 PNPLA8Q9NP80 782 aa11.47□□□□□ -0.57
PTPN4-201ENST00000263708 MDM4O15151 490 aa11.47□□□□□ -0.57
PTPN4-201ENST00000263708 CRY2Q49AN0 593 aa11.47□□□□□ -0.57
PTPN4-201ENST00000263708 HOMEZQ8IX15 550 aa11.47□□□□□ -0.57
PTPN4-201ENST00000263708 FNIP1Q8TF40 1166 aa11.47□□□□□ -0.57
PTPN4-201ENST00000263708 PYDC1Q8WXC3 89 aa11.47□□□□□ -0.57
PTPN4-201ENST00000263708 SAMD4AQ9UPU9 718 aaKnown RBP11.47□□□□□ -0.57
PTPN4-201ENST00000263708 SP140Q13342 867 aa11.46□□□□□ -0.57
PTPN4-201ENST00000263708 RIT2Q99578 217 aa11.46□□□□□ -0.57
PTPN4-201ENST00000263708 C17orf75Q9HAS0 396 aa11.46□□□□□ -0.57
PTPN4-201ENST00000263708 SAGP10523 405 aaPredicted RBP11.46□□□□□ -0.57
PTPN4-201ENST00000263708 TOP3AQ13472 1001 aaPredicted RBP11.46□□□□□ -0.57
PTPN4-201ENST00000263708 HKDC1Q2TB90 917 aa11.46□□□□□ -0.57
PTPN4-201ENST00000263708 C16orf86Q6ZW13 317 aa11.46□□□□□ -0.57
PTPN4-201ENST00000263708 NSUN4Q96CB9 384 aaKnown RBP11.46□□□□□ -0.57
PTPN4-201ENST00000263708 TFECO14948 347 aaPredicted RBP11.46□□□□□ -0.57
PTPN4-201ENST00000263708 TMEM63BQ5T3F8 832 aa11.46□□□□□ -0.57
PTPN4-201ENST00000263708 BTBD10Q9BSF8 475 aa11.46□□□□□ -0.57
PTPN4-201ENST00000263708 GGA2Q9UJY4 613 aa11.46□□□□□ -0.57
PTPN4-201ENST00000263708 A0A087WXM4 84 aa11.46□□□□□ -0.57
PTPN4-201ENST00000263708 C1QTNF3-AMACRE9PGA6 284 aa11.46□□□□□ -0.57
PTPN4-201ENST00000263708 CD86P42081 329 aa11.46□□□□□ -0.57
PTPN4-201ENST00000263708 MYL6P60660 151 aa11.46□□□□□ -0.57
PTPN4-201ENST00000263708 ALX1Q15699 326 aa11.46□□□□□ -0.57
PTPN4-201ENST00000263708 EPHA10Q5JZY3 1008 aa11.46□□□□□ -0.57
PTPN4-201ENST00000263708 FRRS1Q6ZNA5 592 aa11.46□□□□□ -0.57
PTPN4-201ENST00000263708 PLEKHF1Q96S99 279 aa11.46□□□□□ -0.57
PTPN4-201ENST00000263708 MTG1Q9BT17 334 aaPredicted RBP11.46□□□□□ -0.57
PTPN4-201ENST00000263708 SLC39A8Q9C0K1 460 aa11.46□□□□□ -0.57
PTPN4-201ENST00000263708 GBA2Q9HCG7 927 aaPredicted RBP11.46□□□□□ -0.57
PTPN4-201ENST00000263708 SIN3BO75182 1162 aa11.46□□□□□ -0.57
PTPN4-201ENST00000263708 CYP1A1P04798 512 aaPredicted RBP11.46□□□□□ -0.57
PTPN4-201ENST00000263708 ICAM1P05362 532 aa11.46□□□□□ -0.57
PTPN4-201ENST00000263708 GRIA3P42263 894 aa11.46□□□□□ -0.57
PTPN4-201ENST00000263708 IRF8Q02556 426 aa11.46□□□□□ -0.57
PTPN4-201ENST00000263708 NFIXQ14938 502 aa11.46□□□□□ -0.57
PTPN4-201ENST00000263708 PCNX4Q63HM2 1172 aa11.46□□□□□ -0.57
PTPN4-201ENST00000263708 KDM7AQ6ZMT4 941 aa11.46□□□□□ -0.57
PTPN4-201ENST00000263708 RTL4Q6ZR62 310 aa11.46□□□□□ -0.57
PTPN4-201ENST00000263708 ZCCHC23Q6ZST2 131 aa11.46□□□□□ -0.57
PTPN4-201ENST00000263708 AMER2Q8N7J2 671 aa11.46□□□□□ -0.57
PTPN4-201ENST00000263708 MRPL17Q9NRX2 175 aaKnown RBP11.46□□□□□ -0.57
PTPN4-201ENST00000263708 ELOVL2Q9NXB9 296 aa11.46□□□□□ -0.57
PTPN4-201ENST00000263708 USP6P35125 1406 aa11.46□□□□□ -0.58
PTPN4-201ENST00000263708 ME2P23368 584 aa11.46□□□□□ -0.58
PTPN4-201ENST00000263708 RRM1P23921 792 aa11.46□□□□□ -0.58
PTPN4-201ENST00000263708 SLC6A2P23975 617 aa11.46□□□□□ -0.58
PTPN4-201ENST00000263708 IL12AP29459 219 aa11.46□□□□□ -0.58
PTPN4-201ENST00000263708 XRRA1Q6P2D8 792 aa11.46□□□□□ -0.58
PTPN4-201ENST00000263708 FAM131AQ6UXB0 335 aa11.46□□□□□ -0.58
PTPN4-201ENST00000263708 DEPDC4Q8N2C3 294 aa11.46□□□□□ -0.58
PTPN4-201ENST00000263708 MOCS1Q9NZB8 636 aa11.46□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms