RNA–Protein interactions for RNA: ENST00000216456.6

VTI1B-201, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 1 (best)

Gene VTI1B, Length 1,103 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-201ENST00000216456 A6NNZ2 444 aa22.45■■□□□ 1.18
VTI1B-201ENST00000216456 GOLGA6L22H0YM25 854 aa22.45■■□□□ 1.18
VTI1B-201ENST00000216456 AP1G1O43747 822 aa22.45■■□□□ 1.18
VTI1B-201ENST00000216456 TNFAIP3P21580 790 aa22.45■■□□□ 1.18
VTI1B-201ENST00000216456 SNRPD1P62314 119 aaKnown RBP22.45■■□□□ 1.18
VTI1B-201ENST00000216456 DCUN1D2Q6PH85 259 aa22.45■■□□□ 1.18
VTI1B-201ENST00000216456 PLPP6Q8IY26 295 aa22.45■■□□□ 1.18
VTI1B-201ENST00000216456 NAP1L5Q96NT1 182 aaPredicted RBP22.45■■□□□ 1.18
VTI1B-201ENST00000216456 C1QTNF2Q9BXJ5 285 aa22.45■■□□□ 1.18
VTI1B-201ENST00000216456 GPR27Q9NS67 375 aa22.45■■□□□ 1.18
VTI1B-201ENST00000216456 LHX3Q9UBR4 397 aa22.45■■□□□ 1.18
VTI1B-201ENST00000216456 PNMA8BQ9ULN7 279 aaPredicted RBP22.45■■□□□ 1.18
VTI1B-201ENST00000216456 ADAMTS20P59510 1910 aa22.45■■□□□ 1.18
VTI1B-201ENST00000216456 LY6G6EA0A0G2JKS1 128 aa22.44■■□□□ 1.18
VTI1B-201ENST00000216456 NEMP1O14524 444 aa22.44■■□□□ 1.18
VTI1B-201ENST00000216456 MMP20O60882 483 aa22.44■■□□□ 1.18
VTI1B-201ENST00000216456 PIGNO95427 931 aa22.44■■□□□ 1.18
VTI1B-201ENST00000216456 POP4O95707 220 aaKnown RBP22.44■■□□□ 1.18
VTI1B-201ENST00000216456 MBD3O95983 291 aa22.44■■□□□ 1.18
VTI1B-201ENST00000216456 INSM1Q01101 510 aaPredicted RBP22.44■■□□□ 1.18
VTI1B-201ENST00000216456 SEMG2Q02383 582 aa22.44■■□□□ 1.18
VTI1B-201ENST00000216456 ZNF211Q13398 564 aaPredicted RBP22.44■■□□□ 1.18
VTI1B-201ENST00000216456 MAMLD1Q13495 774 aa22.44■■□□□ 1.18
VTI1B-201ENST00000216456 CYTH1Q15438 398 aa22.44■■□□□ 1.18
VTI1B-201ENST00000216456 GDPD4Q6W3E5 623 aa22.44■■□□□ 1.18
VTI1B-201ENST00000216456 KYAT3Q6YP21 454 aaKnown RBP22.44■■□□□ 1.18
VTI1B-201ENST00000216456 OR4C6Q8NH72 309 aa22.44■■□□□ 1.18
VTI1B-201ENST00000216456 TCEAL2Q9H3H9 227 aaPredicted RBP22.44■■□□□ 1.18
VTI1B-201ENST00000216456 PCSK1NQ9UHG2 260 aa22.44■■□□□ 1.18
VTI1B-201ENST00000216456 HS3ST3A1Q9Y663 406 aa22.44■■□□□ 1.18
VTI1B-201ENST00000216456 U3KQA8 63 aa22.44■■□□□ 1.18
VTI1B-201ENST00000216456 KNTC1P50748 2209 aa22.43■■□□□ 1.18
VTI1B-201ENST00000216456 J3KR12 359 aa22.43■■□□□ 1.18
VTI1B-201ENST00000216456 AREL1O15033 823 aa22.43■■□□□ 1.18
VTI1B-201ENST00000216456 C1SP09871 688 aa22.43■■□□□ 1.18
VTI1B-201ENST00000216456 ACP1P24666 158 aa22.43■■□□□ 1.18
VTI1B-201ENST00000216456 GEMIN4P57678 1058 aaKnown RBP22.43■■□□□ 1.18
VTI1B-201ENST00000216456 RHOAP61586 193 aa22.43■■□□□ 1.18
VTI1B-201ENST00000216456 DAB2P98082 770 aa22.43■■□□□ 1.18
VTI1B-201ENST00000216456 SERINC3Q13530 473 aa22.43■■□□□ 1.18
VTI1B-201ENST00000216456 PDE1CQ14123 709 aaPredicted RBP22.43■■□□□ 1.18
VTI1B-201ENST00000216456 NYAP1Q6ZVC0 841 aa22.43■■□□□ 1.18
VTI1B-201ENST00000216456 ZNF571Q7Z3V5 609 aaPredicted RBP22.43■■□□□ 1.18
VTI1B-201ENST00000216456 TTC7BQ86TV6 843 aa22.43■■□□□ 1.18
VTI1B-201ENST00000216456 EPAS1Q99814 870 aa22.43■■□□□ 1.18
VTI1B-201ENST00000216456 WRAP53Q9BUR4 548 aaKnown RBP22.43■■□□□ 1.18
VTI1B-201ENST00000216456 TTYH3Q9C0H2 523 aa22.43■■□□□ 1.18
VTI1B-201ENST00000216456 HAUS4Q9H6D7 363 aa22.43■■□□□ 1.18
VTI1B-201ENST00000216456 RETREG1Q9H6L5 497 aa22.43■■□□□ 1.18
VTI1B-201ENST00000216456 DKK4Q9UBT3 224 aa22.43■■□□□ 1.18
VTI1B-201ENST00000216456 URB1O60287 2271 aaKnown RBP22.42■■□□□ 1.18
VTI1B-201ENST00000216456 ANKRD62A6NC57 917 aa22.42■■□□□ 1.18
VTI1B-201ENST00000216456 PRKCGP05129 697 aa22.42■■□□□ 1.18
VTI1B-201ENST00000216456 SKILP12757 684 aa22.42■■□□□ 1.18
VTI1B-201ENST00000216456 TIMP2P16035 220 aa22.42■■□□□ 1.18
VTI1B-201ENST00000216456 PSMA2P25787 234 aa22.42■■□□□ 1.18
VTI1B-201ENST00000216456 EIF2B5Q13144 721 aaKnown RBP22.42■■□□□ 1.18
VTI1B-201ENST00000216456 SGCGQ13326 291 aa22.42■■□□□ 1.18
VTI1B-201ENST00000216456 CAVIN1Q6NZI2 390 aaKnown RBP22.42■■□□□ 1.18
VTI1B-201ENST00000216456 VPS36Q86VN1 386 aa22.42■■□□□ 1.18
VTI1B-201ENST00000216456 RBFAQ8N0V3 343 aa22.42■■□□□ 1.18
VTI1B-201ENST00000216456 APOLD1Q96LR9 279 aa22.42■■□□□ 1.18
VTI1B-201ENST00000216456 GDAP1L1Q96MZ0 367 aa22.42■■□□□ 1.18
VTI1B-201ENST00000216456 DCBLD2Q96PD2 775 aa22.42■■□□□ 1.18
VTI1B-201ENST00000216456 KCTD15Q96SI1 283 aaPredicted RBP22.42■■□□□ 1.18
VTI1B-201ENST00000216456 MBNL1Q9NR56 388 aaKnown RBP22.42■■□□□ 1.18
VTI1B-201ENST00000216456 COQ6Q9Y2Z9 468 aa22.42■■□□□ 1.18
VTI1B-201ENST00000216456 MYLKQ15746 1914 aa22.41■■□□□ 1.18
VTI1B-201ENST00000216456 SPTY2D1-AS1A0A0U1RR47 76 aa22.41■■□□□ 1.18
VTI1B-201ENST00000216456 WASH4PA8MWX3 477 aa22.41■■□□□ 1.18
VTI1B-201ENST00000216456 K7ESM1 405 aa22.41■■□□□ 1.18
VTI1B-201ENST00000216456 CASC3O15234 703 aaKnown RBP22.41■■□□□ 1.18
VTI1B-201ENST00000216456 TSPAN6O43657 245 aa22.41■■□□□ 1.18
VTI1B-201ENST00000216456 TLX3O43711 291 aaPredicted RBP22.41■■□□□ 1.18
VTI1B-201ENST00000216456 HNF1BP35680 557 aa22.41■■□□□ 1.18
VTI1B-201ENST00000216456 IGFALSP35858 605 aa22.41■■□□□ 1.18
VTI1B-201ENST00000216456 RGRP47804 291 aa22.41■■□□□ 1.18
VTI1B-201ENST00000216456 TPI1P60174 286 aa22.41■■□□□ 1.18
VTI1B-201ENST00000216456 ASIC2Q16515 512 aa22.41■■□□□ 1.18
VTI1B-201ENST00000216456 PLEKHA7Q6IQ23 1121 aa22.41■■□□□ 1.18
VTI1B-201ENST00000216456 ARHGAP36Q6ZRI8 547 aa22.41■■□□□ 1.18
VTI1B-201ENST00000216456 CYP4V2Q6ZWL3 525 aaPredicted RBP22.41■■□□□ 1.18
VTI1B-201ENST00000216456 TP53INP2Q8IXH6 220 aa22.41■■□□□ 1.18
VTI1B-201ENST00000216456 UMODL1-AS1Q8N2C9 162 aa22.41■■□□□ 1.18
VTI1B-201ENST00000216456 ZNF548Q8NEK5 533 aaPredicted RBP22.41■■□□□ 1.18
VTI1B-201ENST00000216456 LRIG1Q96JA1 1093 aa22.41■■□□□ 1.18
VTI1B-201ENST00000216456 SNRNP25Q9BV90 132 aaKnown RBP22.41■■□□□ 1.18
VTI1B-201ENST00000216456 SLC39A8Q9C0K1 460 aa22.41■■□□□ 1.18
VTI1B-201ENST00000216456 DHX35Q9H5Z1 703 aaKnown RBP22.41■■□□□ 1.18
VTI1B-201ENST00000216456 LRRC19Q9H756 370 aa22.41■■□□□ 1.18
VTI1B-201ENST00000216456 PDFQ9HBH1 243 aa22.41■■□□□ 1.18
VTI1B-201ENST00000216456 AP4E1Q9UPM8 1137 aa22.41■■□□□ 1.18
VTI1B-201ENST00000216456 PCDHB1Q9Y5F3 818 aa22.41■■□□□ 1.18
VTI1B-201ENST00000216456 CXorf51AA0A1B0GTR3 108 aa22.4■■□□□ 1.18
VTI1B-201ENST00000216456 DDX3XO00571 662 aaKnown RBP eCLIP22.4■■□□□ 1.183e-37■■■■■ 37
VTI1B-201ENST00000216456 FPGTO14772 594 aa22.4■■□□□ 1.18
VTI1B-201ENST00000216456 IGSF6O95976 241 aa22.4■■□□□ 1.18
VTI1B-201ENST00000216456 CSF2P04141 144 aa22.4■■□□□ 1.18
VTI1B-201ENST00000216456 PFN3P60673 137 aa22.4■■□□□ 1.18
VTI1B-201ENST00000216456 PDZD3Q86UT5 571 aa22.4■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms