RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 LRMDAQ9H2I8 198 aa13.69□□□□□ -0.22
SF3A1-201ENST00000215793 DDX18Q9NVP1 670 aaKnown RBP13.69□□□□□ -0.22
SF3A1-201ENST00000215793 RPL26L1Q9UNX3 145 aaKnown RBP13.69□□□□□ -0.22
SF3A1-201ENST00000215793 ARIH1Q9Y4X5 557 aaPredicted RBP13.69□□□□□ -0.22
SF3A1-201ENST00000215793 CCDC189A1A4V9 331 aa13.69□□□□□ -0.22
SF3A1-201ENST00000215793 SMIM22K7EJ46 135 aa13.69□□□□□ -0.22
SF3A1-201ENST00000215793 OR6A2O95222 327 aa13.69□□□□□ -0.22
SF3A1-201ENST00000215793 IL6P05231 212 aa13.69□□□□□ -0.22
SF3A1-201ENST00000215793 MATKP42679 507 aa13.69□□□□□ -0.22
SF3A1-201ENST00000215793 MAPK9P45984 424 aa13.69□□□□□ -0.22
SF3A1-201ENST00000215793 AIF1P55008 147 aa13.69□□□□□ -0.22
SF3A1-201ENST00000215793 CRADDP78560 199 aa13.69□□□□□ -0.22
SF3A1-201ENST00000215793 PTPRNQ16849 979 aa13.69□□□□□ -0.22
SF3A1-201ENST00000215793 TXNDC11Q6PKC3 985 aa13.69□□□□□ -0.22
SF3A1-201ENST00000215793 POTEHQ6S545 545 aa13.69□□□□□ -0.22
SF3A1-201ENST00000215793 TPGS1Q6ZTW0 290 aa13.69□□□□□ -0.22
SF3A1-201ENST00000215793 KIAA0408Q6ZU52 694 aa13.69□□□□□ -0.22
SF3A1-201ENST00000215793 FAM20CQ8IXL6 584 aa13.69□□□□□ -0.22
SF3A1-201ENST00000215793 CSGALNACT1Q8TDX6 532 aa13.69□□□□□ -0.22
SF3A1-201ENST00000215793 ZNF558Q96NG5 402 aa13.69□□□□□ -0.22
SF3A1-201ENST00000215793 NUAK2Q9H093 628 aa13.69□□□□□ -0.22
SF3A1-201ENST00000215793 NDOR1Q9UHB4 597 aa13.69□□□□□ -0.22
SF3A1-201ENST00000215793 CORO2BQ9UQ03 480 aa13.69□□□□□ -0.22
SF3A1-201ENST00000215793 CLUHO75153 1309 aa13.68□□□□□ -0.22
SF3A1-201ENST00000215793 TRIM43BA6NCK2 446 aa13.68□□□□□ -0.22
SF3A1-201ENST00000215793 EPHB6O15197 1021 aa13.68□□□□□ -0.22
SF3A1-201ENST00000215793 ITGA2BP08514 1039 aa13.68□□□□□ -0.22
SF3A1-201ENST00000215793 ERCC2P18074 760 aa13.68□□□□□ -0.22
SF3A1-201ENST00000215793 HDCP19113 662 aa13.68□□□□□ -0.22
SF3A1-201ENST00000215793 GRIA3P42263 894 aa13.68□□□□□ -0.22
SF3A1-201ENST00000215793 CRATP43155 626 aa13.68□□□□□ -0.22
SF3A1-201ENST00000215793 MRPS6P82932 125 aaKnown RBP13.68□□□□□ -0.22
SF3A1-201ENST00000215793 CREMQ03060 361 aa13.68□□□□□ -0.22
SF3A1-201ENST00000215793 TMC5Q6UXY8 1006 aa13.68□□□□□ -0.22
SF3A1-201ENST00000215793 SH3BP5LQ7L8J4 393 aa13.68□□□□□ -0.22
SF3A1-201ENST00000215793 C16orf62Q7Z3J2 963 aa13.68□□□□□ -0.22
SF3A1-201ENST00000215793 DPF3Q92784 378 aa13.68□□□□□ -0.22
SF3A1-201ENST00000215793 FTHL17Q9BXU8 183 aa13.68□□□□□ -0.22
SF3A1-201ENST00000215793 CNGB3Q9NQW8 809 aa13.68□□□□□ -0.22
SF3A1-201ENST00000215793 TRAV19A0A0A6YYK7 116 aa13.68□□□□□ -0.22
SF3A1-201ENST00000215793 TBC1D3BA6NDS4 549 aa13.68□□□□□ -0.22
SF3A1-201ENST00000215793 SLC15A5A6NIM6 579 aa13.68□□□□□ -0.22
SF3A1-201ENST00000215793 CCNA2P20248 432 aa13.68□□□□□ -0.22
SF3A1-201ENST00000215793 BMP6P22004 513 aa13.68□□□□□ -0.22
SF3A1-201ENST00000215793 IDH2P48735 452 aaKnown RBP13.68□□□□□ -0.22
SF3A1-201ENST00000215793 BNIP2Q12982 314 aa13.68□□□□□ -0.22
SF3A1-201ENST00000215793 GJC2Q5T442 439 aaPredicted RBP13.68□□□□□ -0.22
SF3A1-201ENST00000215793 MAGEE2Q8TD90 523 aaPredicted RBP13.68□□□□□ -0.22
SF3A1-201ENST00000215793 MBOAT7Q96N66 472 aa13.68□□□□□ -0.22
SF3A1-201ENST00000215793 FBXO5Q9UKT4 447 aa13.68□□□□□ -0.22
SF3A1-201ENST00000215793 TRIM38O00635 465 aa13.68□□□□□ -0.22
SF3A1-201ENST00000215793 ALOX15BO15296 676 aa13.68□□□□□ -0.22
SF3A1-201ENST00000215793 MAGEC1O60732 1142 aa13.68□□□□□ -0.22
SF3A1-201ENST00000215793 NTRK1P04629 796 aa13.68□□□□□ -0.22
SF3A1-201ENST00000215793 ITGA2P17301 1181 aa13.68□□□□□ -0.22
SF3A1-201ENST00000215793 ALOX12P18054 663 aa13.68□□□□□ -0.22
SF3A1-201ENST00000215793 SMIM11AP58511 58 aa13.68□□□□□ -0.22
SF3A1-201ENST00000215793 CSNK2BP67870 215 aa13.68□□□□□ -0.22
SF3A1-201ENST00000215793 BIKQ13323 160 aa13.68□□□□□ -0.22
SF3A1-201ENST00000215793 ARMC3Q5W041 872 aa13.68□□□□□ -0.22
SF3A1-201ENST00000215793 C1orf50Q9BV19 199 aa13.68□□□□□ -0.22
SF3A1-201ENST00000215793 TBC1D10AQ9BXI6 508 aa13.68□□□□□ -0.22
SF3A1-201ENST00000215793 RNPEPQ9H4A4 650 aa13.68□□□□□ -0.22
SF3A1-201ENST00000215793 ARHGAP23Q9P227 1491 aa13.68□□□□□ -0.22
SF3A1-201ENST00000215793 A8MX80 341 aa13.68□□□□□ -0.22
SF3A1-201ENST00000215793 SH3BGRLO75368 114 aa13.68□□□□□ -0.22
SF3A1-201ENST00000215793 OTCP00480 354 aa13.68□□□□□ -0.22
SF3A1-201ENST00000215793 SLC25A3Q00325 362 aa13.68□□□□□ -0.22
SF3A1-201ENST00000215793 ZNF549Q6P9A3 640 aa13.68□□□□□ -0.22
SF3A1-201ENST00000215793 CXCL17Q6UXB2 119 aa13.68□□□□□ -0.22
SF3A1-201ENST00000215793 PAGE2Q7Z2X7 111 aa13.68□□□□□ -0.22
SF3A1-201ENST00000215793 C12orf56Q8IXR9 622 aa13.68□□□□□ -0.22
SF3A1-201ENST00000215793 TRIM63Q969Q1 353 aa13.68□□□□□ -0.22
SF3A1-201ENST00000215793 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP13.68□□□□□ -0.22
SF3A1-201ENST00000215793 PXDNQ92626 1479 aa13.67□□□□□ -0.22
SF3A1-201ENST00000215793 TSC22D2O75157 780 aa13.67□□□□□ -0.22
SF3A1-201ENST00000215793 LIPMQ5VYY2 423 aa13.67□□□□□ -0.22
SF3A1-201ENST00000215793 EIF3MQ7L2H7 374 aaKnown RBP13.67□□□□□ -0.22
SF3A1-201ENST00000215793 CXorf40AQ8TE69 158 aa13.67□□□□□ -0.22
SF3A1-201ENST00000215793 SLC39A8Q9C0K1 460 aa13.67□□□□□ -0.22
SF3A1-201ENST00000215793 CHKBQ9Y259 395 aa13.67□□□□□ -0.22
SF3A1-201ENST00000215793 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP13.67□□□□□ -0.22
SF3A1-201ENST00000215793 SPATA31C2B4DYI2 1134 aa13.67□□□□□ -0.22
SF3A1-201ENST00000215793 SLC28A1O00337 649 aa13.67□□□□□ -0.22
SF3A1-201ENST00000215793 LYPLA2O95372 231 aa13.67□□□□□ -0.22
SF3A1-201ENST00000215793 FTH1P02794 183 aa13.67□□□□□ -0.22
SF3A1-201ENST00000215793 ENO2P09104 434 aaPredicted RBP13.67□□□□□ -0.22
SF3A1-201ENST00000215793 SMIM10L2AP0DMW4 78 aa13.67□□□□□ -0.22
SF3A1-201ENST00000215793 SMIM10L2BP0DMW5 78 aa13.67□□□□□ -0.22
SF3A1-201ENST00000215793 PTSQ03393 145 aa13.67□□□□□ -0.22
SF3A1-201ENST00000215793 NRF1Q16656 503 aa13.67□□□□□ -0.22
SF3A1-201ENST00000215793 COLGALT2Q8IYK4 626 aa13.67□□□□□ -0.22
SF3A1-201ENST00000215793 CD101Q93033 1021 aa13.67□□□□□ -0.22
SF3A1-201ENST00000215793 HES2Q9Y543 173 aa13.67□□□□□ -0.22
SF3A1-201ENST00000215793 SERPINA6P08185 405 aa13.67□□□□□ -0.22
SF3A1-201ENST00000215793 GOT1P17174 413 aa13.67□□□□□ -0.22
SF3A1-201ENST00000215793 LPOP22079 712 aaPredicted RBP13.67□□□□□ -0.22
SF3A1-201ENST00000215793 CHN2P52757 468 aa13.67□□□□□ -0.22
SF3A1-201ENST00000215793 TAF5Q15542 800 aa13.67□□□□□ -0.22
SF3A1-201ENST00000215793 ZNHIT3Q15649 155 aaPredicted RBP13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms