RNA–Protein interactions for RNA: ENST00000636964.1

CLN6-217, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 2

Gene CLN6, Length 3,335 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-217ENST00000636964 LRRC6Q86X45 466 aa11.68□□□□□ -0.54
CLN6-217ENST00000636964 ATPAF2Q8N5M1 289 aa11.68□□□□□ -0.54
CLN6-217ENST00000636964 DENND1AQ8TEH3 1009 aa11.68□□□□□ -0.54
CLN6-217ENST00000636964 MZB1Q8WU39 189 aa11.68□□□□□ -0.54
CLN6-217ENST00000636964 ARNTL2Q8WYA1 636 aa11.68□□□□□ -0.54
CLN6-217ENST00000636964 ZNF419Q96HQ0 510 aaPredicted RBP11.68□□□□□ -0.54
CLN6-217ENST00000636964 MLPHQ9BV36 600 aaPredicted RBP11.68□□□□□ -0.54
CLN6-217ENST00000636964 CATSPERBQ9H7T0 1116 aa11.68□□□□□ -0.54
CLN6-217ENST00000636964 IL37Q9NZH6 218 aa11.68□□□□□ -0.54
CLN6-217ENST00000636964 USH1CQ9Y6N9 552 aa11.68□□□□□ -0.54
CLN6-217ENST00000636964 WDR91A4D1P6 747 aa11.68□□□□□ -0.54
CLN6-217ENST00000636964 SLC38A8A6NNN8 435 aa11.68□□□□□ -0.54
CLN6-217ENST00000636964 MT-ND3P03897 115 aa11.68□□□□□ -0.54
CLN6-217ENST00000636964 LYNP07948 512 aa11.68□□□□□ -0.54
CLN6-217ENST00000636964 TSHRP16473 764 aa11.68□□□□□ -0.54
CLN6-217ENST00000636964 MS4A13Q5J8X5 152 aa11.68□□□□□ -0.54
CLN6-217ENST00000636964 MANEALQ5VSG8 457 aa11.68□□□□□ -0.54
CLN6-217ENST00000636964 CNKSR3Q6P9H4 555 aa11.68□□□□□ -0.54
CLN6-217ENST00000636964 ARHGAP18Q8N392 663 aa11.68□□□□□ -0.54
CLN6-217ENST00000636964 GSDMBQ8TAX9 411 aa11.68□□□□□ -0.54
CLN6-217ENST00000636964 ZSCAN18Q8TBC5 510 aaPredicted RBP11.68□□□□□ -0.54
CLN6-217ENST00000636964 LRRC39Q96DD0 335 aa11.68□□□□□ -0.54
CLN6-217ENST00000636964 NR1H4Q96RI1 486 aaPredicted RBP11.68□□□□□ -0.54
CLN6-217ENST00000636964 CLSTN3Q9BQT9 956 aa11.68□□□□□ -0.54
CLN6-217ENST00000636964 ATXN10Q9UBB4 475 aa11.68□□□□□ -0.54
CLN6-217ENST00000636964 TMCC3Q9ULS5 477 aa11.68□□□□□ -0.54
CLN6-217ENST00000636964 PCDHA11Q9Y5I1 949 aa11.68□□□□□ -0.54
CLN6-217ENST00000636964 RANBP2P49792 3224 aaKnown RBP11.68□□□□□ -0.54
CLN6-217ENST00000636964 MICAL3Q7RTP6 2002 aa11.68□□□□□ -0.54
CLN6-217ENST00000636964 ATP9BO43861 1147 aa11.68□□□□□ -0.54
CLN6-217ENST00000636964 TLR5O60602 858 aa11.68□□□□□ -0.54
CLN6-217ENST00000636964 PFDN1O60925 122 aa11.68□□□□□ -0.54
CLN6-217ENST00000636964 SPAG6O75602 509 aa11.68□□□□□ -0.54
CLN6-217ENST00000636964 ATP5HO75947 161 aa11.68□□□□□ -0.54
CLN6-217ENST00000636964 SEC24AO95486 1093 aa11.68□□□□□ -0.54
CLN6-217ENST00000636964 MT-CYBP00156 380 aaPredicted RBP11.68□□□□□ -0.54
CLN6-217ENST00000636964 CLTBP09497 229 aa11.68□□□□□ -0.54
CLN6-217ENST00000636964 PTPN4P29074 926 aa11.68□□□□□ -0.54
CLN6-217ENST00000636964 GRIA2P42262 883 aa11.68□□□□□ -0.54
CLN6-217ENST00000636964 KCNQ1P51787 676 aa11.68□□□□□ -0.54
CLN6-217ENST00000636964 ZNF135P52742 658 aaPredicted RBP11.68□□□□□ -0.54
CLN6-217ENST00000636964 LSAMPQ13449 338 aa11.68□□□□□ -0.54
CLN6-217ENST00000636964 MSANTD2Q6P1R3 559 aa11.68□□□□□ -0.54
CLN6-217ENST00000636964 NCCRP1Q6ZVX7 275 aaPredicted RBP11.68□□□□□ -0.54
CLN6-217ENST00000636964 ZNF354CQ86Y25 554 aa11.68□□□□□ -0.54
CLN6-217ENST00000636964 TEKT5Q96M29 485 aa11.68□□□□□ -0.54
CLN6-217ENST00000636964 RHBDL2Q9NX52 303 aa11.68□□□□□ -0.54
CLN6-217ENST00000636964 WBP1LQ9NX94 342 aa11.68□□□□□ -0.54
CLN6-217ENST00000636964 STOML1Q9UBI4 398 aa11.68□□□□□ -0.54
CLN6-217ENST00000636964 RAD54BQ9Y620 910 aa11.68□□□□□ -0.54
CLN6-217ENST00000636964 COL4A4P53420 1690 aaPredicted RBP11.67□□□□□ -0.54
CLN6-217ENST00000636964 FAM92AA1XBS5 289 aa11.67□□□□□ -0.54
CLN6-217ENST00000636964 MAGEA13PA6NCF6 341 aa11.67□□□□□ -0.54
CLN6-217ENST00000636964 TRIM49D1C9J1S8 452 aa11.67□□□□□ -0.54
CLN6-217ENST00000636964 MAFKO60675 156 aa11.67□□□□□ -0.54
CLN6-217ENST00000636964 CDK16Q00536 496 aa11.67□□□□□ -0.54
CLN6-217ENST00000636964 CERCAMQ5T4B2 595 aa11.67□□□□□ -0.54
CLN6-217ENST00000636964 SLC26A11Q86WA9 606 aa11.67□□□□□ -0.54
CLN6-217ENST00000636964 IGSF8Q969P0 613 aa11.67□□□□□ -0.54
CLN6-217ENST00000636964 MYEOVQ96EZ4 313 aa11.67□□□□□ -0.54
CLN6-217ENST00000636964 ZNF512Q96ME7 567 aaPredicted RBP11.67□□□□□ -0.54
CLN6-217ENST00000636964 GBA3Q9H227 469 aa11.67□□□□□ -0.54
CLN6-217ENST00000636964 PPCSQ9HAB8 311 aa11.67□□□□□ -0.54
CLN6-217ENST00000636964 ALG13Q9NP73 1137 aaKnown RBP11.67□□□□□ -0.54
CLN6-217ENST00000636964 SLC17A7Q9P2U7 560 aa11.67□□□□□ -0.54
CLN6-217ENST00000636964 FETUBQ9UGM5 382 aa11.67□□□□□ -0.54
CLN6-217ENST00000636964 CDH23Q9H251 3354 aa11.67□□□□□ -0.54
CLN6-217ENST00000636964 UNC80Q8N2C7 3258 aa11.67□□□□□ -0.54
CLN6-217ENST00000636964 IQANK1A0A1B0GTG1 560 aa11.67□□□□□ -0.54
CLN6-217ENST00000636964 TYROBPO43914 113 aa11.67□□□□□ -0.54
CLN6-217ENST00000636964 EDF1O60869 148 aaKnown RBP11.67□□□□□ -0.54
CLN6-217ENST00000636964 HALP42357 657 aa11.67□□□□□ -0.54
CLN6-217ENST00000636964 RPL10AP62906 217 aaKnown RBP11.67□□□□□ -0.54
CLN6-217ENST00000636964 MROH9Q5TGP6 573 aa11.67□□□□□ -0.54
CLN6-217ENST00000636964 FBXL22Q6P050 247 aa11.67□□□□□ -0.54
CLN6-217ENST00000636964 TOP1MTQ969P6 601 aa11.67□□□□□ -0.54
CLN6-217ENST00000636964 GRAMD1AQ96CP6 724 aa11.67□□□□□ -0.54
CLN6-217ENST00000636964 OXNAD1Q96HP4 312 aaPredicted RBP11.67□□□□□ -0.54
CLN6-217ENST00000636964 ARL8BQ9NVJ2 186 aa11.67□□□□□ -0.54
CLN6-217ENST00000636964 TUBA8Q9NY65 449 aaPredicted RBP11.67□□□□□ -0.54
CLN6-217ENST00000636964 MTRRQ9UBK8 725 aa11.67□□□□□ -0.54
CLN6-217ENST00000636964 TRIM43BA6NCK2 446 aa11.66□□□□□ -0.54
CLN6-217ENST00000636964 TRDMT1O14717 391 aaKnown RBP11.66□□□□□ -0.54
CLN6-217ENST00000636964 FGF10O15520 208 aaPredicted RBP11.66□□□□□ -0.54
CLN6-217ENST00000636964 PSMG1O95456 288 aa11.66□□□□□ -0.54
CLN6-217ENST00000636964 AP2A1O95782 977 aa11.66□□□□□ -0.54
CLN6-217ENST00000636964 PRKCHP24723 683 aa11.66□□□□□ -0.54
CLN6-217ENST00000636964 SLC34A1Q06495 639 aa11.66□□□□□ -0.54
CLN6-217ENST00000636964 RASA2Q15283 850 aa11.66□□□□□ -0.54
CLN6-217ENST00000636964 SLC8B1Q6J4K2 584 aa11.66□□□□□ -0.54
CLN6-217ENST00000636964 LVRNQ6Q4G3 990 aa11.66□□□□□ -0.54
CLN6-217ENST00000636964 OTOP2Q7RTS6 562 aa11.66□□□□□ -0.54
CLN6-217ENST00000636964 CLNKQ7Z7G1 428 aa11.66□□□□□ -0.54
CLN6-217ENST00000636964 MTDHQ86UE4 582 aaKnown RBP11.66□□□□□ -0.54
CLN6-217ENST00000636964 SLC15A3Q8IY34 581 aa11.66□□□□□ -0.54
CLN6-217ENST00000636964 RTL3Q8N8U3 475 aaKnown RBP11.66□□□□□ -0.54
CLN6-217ENST00000636964 TCP10LQ8TDR4 215 aa11.66□□□□□ -0.54
CLN6-217ENST00000636964 TRIM43Q96BQ3 446 aaPredicted RBP11.66□□□□□ -0.54
CLN6-217ENST00000636964 PTCD3Q96EY7 689 aaKnown RBP11.66□□□□□ -0.54
CLN6-217ENST00000636964 NOL6Q9H6R4 1146 aaKnown RBP11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms