RNA–Protein interactions for RNA: ENST00000627232.2

PNKP-220, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 1,530 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-220ENST00000627232 ESRP1Q6NXG1 681 aaKnown RBP22.33■■□□□ 1.17
PNKP-220ENST00000627232 C16orf46Q6P387 395 aa22.33■■□□□ 1.17
PNKP-220ENST00000627232 CCDC91Q7Z6B0 441 aa22.33■■□□□ 1.17
PNKP-220ENST00000627232 CLEC14AQ86T13 490 aa22.33■■□□□ 1.17
PNKP-220ENST00000627232 LCA5Q86VQ0 697 aa22.33■■□□□ 1.17
PNKP-220ENST00000627232 ZC3HC1Q86WB0 502 aaKnown RBP22.33■■□□□ 1.17
PNKP-220ENST00000627232 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP22.33■■□□□ 1.17
PNKP-220ENST00000627232 H3BNC9 293 aa22.32■■□□□ 1.16
PNKP-220ENST00000627232 KIAA0355O15063 1070 aa22.32■■□□□ 1.16
PNKP-220ENST00000627232 PRKCGP05129 697 aa22.32■■□□□ 1.16
PNKP-220ENST00000627232 DLDP09622 509 aaKnown RBP22.32■■□□□ 1.16
PNKP-220ENST00000627232 ELF1P32519 619 aa22.32■■□□□ 1.16
PNKP-220ENST00000627232 PPM1AP35813 382 aa22.32■■□□□ 1.16
PNKP-220ENST00000627232 CHRNA4P43681 627 aa22.32■■□□□ 1.16
PNKP-220ENST00000627232 GJA8P48165 433 aa22.32■■□□□ 1.16
PNKP-220ENST00000627232 ARFIP2P53365 341 aa22.32■■□□□ 1.16
PNKP-220ENST00000627232 CREMQ03060 361 aa22.32■■□□□ 1.16
PNKP-220ENST00000627232 PLD1Q13393 1074 aa22.32■■□□□ 1.16
PNKP-220ENST00000627232 MSLNQ13421 630 aaPredicted RBP22.32■■□□□ 1.16
PNKP-220ENST00000627232 LRRC26Q2I0M4 334 aa22.32■■□□□ 1.16
PNKP-220ENST00000627232 PPM1JQ5JR12 505 aa22.32■■□□□ 1.16
PNKP-220ENST00000627232 RFWD3Q6PCD5 774 aa22.32■■□□□ 1.16
PNKP-220ENST00000627232 CMC1Q7Z7K0 106 aa22.32■■□□□ 1.16
PNKP-220ENST00000627232 DENND1CQ8IV53 801 aa22.32■■□□□ 1.16
PNKP-220ENST00000627232 BBS5Q8N3I7 341 aa22.32■■□□□ 1.16
PNKP-220ENST00000627232 SLC25A41Q8N5S1 370 aa22.32■■□□□ 1.16
PNKP-220ENST00000627232 GABPB2Q8TAK5 448 aaPredicted RBP22.32■■□□□ 1.16
PNKP-220ENST00000627232 ATXN3LQ9H3M9 355 aa22.32■■□□□ 1.16
PNKP-220ENST00000627232 KCNK13Q9HB14 408 aa22.32■■□□□ 1.16
PNKP-220ENST00000627232 TXLNGQ9NUQ3 528 aa22.32■■□□□ 1.16
PNKP-220ENST00000627232 WBP1LQ9NX94 342 aa22.32■■□□□ 1.16
PNKP-220ENST00000627232 TMEM216Q9P0N5 145 aa22.32■■□□□ 1.16
PNKP-220ENST00000627232 STK39Q9UEW8 545 aa22.32■■□□□ 1.16
PNKP-220ENST00000627232 A0A096LPK6 155 aa22.31■■□□□ 1.16
PNKP-220ENST00000627232 LOC285095A0A1B0GVY8 99 aa22.31■■□□□ 1.16
PNKP-220ENST00000627232 PRRG1O14668 218 aa22.31■■□□□ 1.16
PNKP-220ENST00000627232 VAPBO95292 243 aa22.31■■□□□ 1.16
PNKP-220ENST00000627232 LATS1O95835 1130 aa22.31■■□□□ 1.16
PNKP-220ENST00000627232 ARNTP27540 789 aa22.31■■□□□ 1.16
PNKP-220ENST00000627232 HOXD9P28356 352 aaPredicted RBP22.31■■□□□ 1.16
PNKP-220ENST00000627232 CORO1AP31146 461 aaKnown RBP22.31■■□□□ 1.16
PNKP-220ENST00000627232 THOC5Q13769 683 aaKnown RBP22.31■■□□□ 1.16
PNKP-220ENST00000627232 ZNF235Q14590 738 aa22.31■■□□□ 1.16
PNKP-220ENST00000627232 PCLAFQ15004 111 aa22.31■■□□□ 1.16
PNKP-220ENST00000627232 TSTD2Q5T7W7 516 aa22.31■■□□□ 1.16
PNKP-220ENST00000627232 MBLAC2Q68D91 279 aa22.31■■□□□ 1.16
PNKP-220ENST00000627232 FAM117BQ6P1L5 589 aa22.31■■□□□ 1.16
PNKP-220ENST00000627232 CFAP52Q8N1V2 620 aa22.31■■□□□ 1.16
PNKP-220ENST00000627232 ERP27Q96DN0 273 aa22.31■■□□□ 1.16
PNKP-220ENST00000627232 FEM1CQ96JP0 617 aa22.31■■□□□ 1.16
PNKP-220ENST00000627232 THAP1Q9NVV9 213 aa22.31■■□□□ 1.16
PNKP-220ENST00000627232 DCTN4Q9UJW0 460 aa22.31■■□□□ 1.16
PNKP-220ENST00000627232 OBSL1O75147 1896 aa22.31■■□□□ 1.16
PNKP-220ENST00000627232 ILVBLA1L0T0 632 aa22.31■■□□□ 1.16
PNKP-220ENST00000627232 CCDC78A2IDD5 438 aa22.31■■□□□ 1.16
PNKP-220ENST00000627232 BAIAP3O94812 1187 aa22.31■■□□□ 1.16
PNKP-220ENST00000627232 EPOP01588 193 aa22.31■■□□□ 1.16
PNKP-220ENST00000627232 KLKB1P03952 638 aa22.31■■□□□ 1.16
PNKP-220ENST00000627232 C2P06681 752 aa22.31■■□□□ 1.16
PNKP-220ENST00000627232 EPHB3P54753 998 aa22.31■■□□□ 1.16
PNKP-220ENST00000627232 TWF1Q12792 350 aa22.31■■□□□ 1.16
PNKP-220ENST00000627232 SEPT6Q14141 434 aa22.31■■□□□ 1.16
PNKP-220ENST00000627232 GRM3Q14832 879 aa22.31■■□□□ 1.16
PNKP-220ENST00000627232 CNGA3Q16281 694 aa22.31■■□□□ 1.16
PNKP-220ENST00000627232 TTC31Q49AM3 519 aaPredicted RBP22.31■■□□□ 1.16
PNKP-220ENST00000627232 ADGRF1Q5T601 910 aa22.31■■□□□ 1.16
PNKP-220ENST00000627232 KIAA0408Q6ZU52 694 aa22.31■■□□□ 1.16
PNKP-220ENST00000627232 SETD3Q86TU7 594 aaPredicted RBP22.31■■□□□ 1.16
PNKP-220ENST00000627232 CRLF3Q8IUI8 442 aa22.31■■□□□ 1.16
PNKP-220ENST00000627232 C2CD4AQ8NCU7 369 aaPredicted RBP22.31■■□□□ 1.16
PNKP-220ENST00000627232 PPP1R14CQ8TAE6 165 aa22.31■■□□□ 1.16
PNKP-220ENST00000627232 CALML6Q8TD86 181 aa22.31■■□□□ 1.16
PNKP-220ENST00000627232 ARMC5Q96C12 935 aa22.31■■□□□ 1.16
PNKP-220ENST00000627232 ATXN7L3BQ96GX2 97 aa22.31■■□□□ 1.16
PNKP-220ENST00000627232 SLC40A1Q9NP59 571 aa22.31■■□□□ 1.16
PNKP-220ENST00000627232 MRPL17Q9NRX2 175 aaKnown RBP22.31■■□□□ 1.16
PNKP-220ENST00000627232 KCNK4Q9NYG8 393 aa22.31■■□□□ 1.16
PNKP-220ENST00000627232 SLC2A6Q9UGQ3 507 aa22.31■■□□□ 1.16
PNKP-220ENST00000627232 INSL5Q9Y5Q6 135 aa22.31■■□□□ 1.16
PNKP-220ENST00000627232 CCDC195A0A1B0GUA6 201 aa22.3■■□□□ 1.16
PNKP-220ENST00000627232 GOLGA8TH3BQL2 631 aa22.3■■□□□ 1.16
PNKP-220ENST00000627232 KDELR3O43731 214 aa22.3■■□□□ 1.16
PNKP-220ENST00000627232 RASSF9O75901 435 aa22.3■■□□□ 1.16
PNKP-220ENST00000627232 AHSGP02765 367 aa22.3■■□□□ 1.16
PNKP-220ENST00000627232 FGF3P11487 239 aaPredicted RBP22.3■■□□□ 1.16
PNKP-220ENST00000627232 CSF2RAP15509 400 aa22.3■■□□□ 1.16
PNKP-220ENST00000627232 GRK2P25098 689 aa22.3■■□□□ 1.16
PNKP-220ENST00000627232 ETFBP38117 255 aa22.3■■□□□ 1.16
PNKP-220ENST00000627232 LAMB3Q13751 1172 aa22.3■■□□□ 1.16
PNKP-220ENST00000627232 IHHQ14623 411 aa22.3■■□□□ 1.16
PNKP-220ENST00000627232 RFTN1Q14699 578 aaPredicted RBP22.3■■□□□ 1.16
PNKP-220ENST00000627232 CES4AQ5XG92 561 aa22.3■■□□□ 1.16
PNKP-220ENST00000627232 FBXO46Q6PJ61 603 aaPredicted RBP22.3■■□□□ 1.16
PNKP-220ENST00000627232 KDELC2Q7Z4H8 507 aa22.3■■□□□ 1.16
PNKP-220ENST00000627232 DNAJB7Q7Z6W7 309 aaPredicted RBP22.3■■□□□ 1.16
PNKP-220ENST00000627232 HERC6Q8IVU3 1022 aa22.3■■□□□ 1.16
PNKP-220ENST00000627232 PRICKLE1Q96MT3 831 aaPredicted RBP22.3■■□□□ 1.16
PNKP-220ENST00000627232 SEMA3CQ99985 751 aa22.3■■□□□ 1.16
PNKP-220ENST00000627232 TMEM120AQ9BXJ8 343 aa22.3■■□□□ 1.16
PNKP-220ENST00000627232 COPG2Q9UBF2 871 aa22.3■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms