RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 RNF38Q9H0F5 515 aa14.65□□□□□ -0.06
VRK3-217ENST00000599538 ATP13A1Q9HD20 1204 aa14.65□□□□□ -0.06
VRK3-217ENST00000599538 COMMD8Q9NX08 183 aa14.65□□□□□ -0.06
VRK3-217ENST00000599538 DNMT3LQ9UJW3 386 aa14.65□□□□□ -0.06
VRK3-217ENST00000599538 TBX21Q9UL17 535 aa14.65□□□□□ -0.06
VRK3-217ENST00000599538 BACE2Q9Y5Z0 518 aa14.65□□□□□ -0.06
VRK3-217ENST00000599538 CCL22O00626 93 aa14.65□□□□□ -0.06
VRK3-217ENST00000599538 SCAMP3O14828 347 aaKnown RBP14.65□□□□□ -0.06
VRK3-217ENST00000599538 MGRN1O60291 552 aa14.65□□□□□ -0.06
VRK3-217ENST00000599538 ACSL4O60488 711 aa14.65□□□□□ -0.06
VRK3-217ENST00000599538 CSRP3P50461 194 aa14.65□□□□□ -0.06
VRK3-217ENST00000599538 INSCQ1MX18 579 aa14.65□□□□□ -0.06
VRK3-217ENST00000599538 DENND1CQ8IV53 801 aa14.65□□□□□ -0.06
VRK3-217ENST00000599538 OR7D4Q8NG98 312 aa14.65□□□□□ -0.06
VRK3-217ENST00000599538 PRICKLE1Q96MT3 831 aaPredicted RBP14.65□□□□□ -0.06
VRK3-217ENST00000599538 GPR22Q99680 433 aa14.65□□□□□ -0.06
VRK3-217ENST00000599538 CYP4F11Q9HBI6 524 aa14.65□□□□□ -0.06
VRK3-217ENST00000599538 ACSS2Q9NR19 701 aa14.65□□□□□ -0.06
VRK3-217ENST00000599538 STK38LQ9Y2H1 464 aa14.65□□□□□ -0.06
VRK3-217ENST00000599538 HBS1LQ9Y450 684 aaKnown RBP14.65□□□□□ -0.06
VRK3-217ENST00000599538 ZFP37Q9Y6Q3 630 aaPredicted RBP14.65□□□□□ -0.06
VRK3-217ENST00000599538 CHD5Q8TDI0 1954 aa14.64□□□□□ -0.07
VRK3-217ENST00000599538 C2orf78A6NCI8 922 aa14.64□□□□□ -0.07
VRK3-217ENST00000599538 CFAP73A6NFT4 308 aa14.64□□□□□ -0.07
VRK3-217ENST00000599538 F5H5T6 163 aa14.64□□□□□ -0.07
VRK3-217ENST00000599538 TIMM44O43615 452 aa14.64□□□□□ -0.07
VRK3-217ENST00000599538 DNAJC6O75061 913 aa14.64□□□□□ -0.07
VRK3-217ENST00000599538 GLDCP23378 1020 aa14.64□□□□□ -0.07
VRK3-217ENST00000599538 SKIV2L2P42285 1042 aaKnown RBP14.64□□□□□ -0.07
VRK3-217ENST00000599538 SLC1A2P43004 574 aa14.64□□□□□ -0.07
VRK3-217ENST00000599538 TUFMP49411 452 aaKnown RBP14.64□□□□□ -0.07
VRK3-217ENST00000599538 IL10RBQ08334 325 aa14.64□□□□□ -0.07
VRK3-217ENST00000599538 ZNF789Q5FWF6 425 aa14.64□□□□□ -0.07
VRK3-217ENST00000599538 SLC41A1Q8IVJ1 513 aa14.64□□□□□ -0.07
VRK3-217ENST00000599538 ZNF784Q8NCA9 323 aaPredicted RBP14.64□□□□□ -0.07
VRK3-217ENST00000599538 PPP1R14CQ8TAE6 165 aa14.64□□□□□ -0.07
VRK3-217ENST00000599538 ZNF461Q8TAF7 563 aa14.64□□□□□ -0.07
VRK3-217ENST00000599538 NSMCE3Q96MG7 304 aa14.64□□□□□ -0.07
VRK3-217ENST00000599538 EBF4Q9BQW3 602 aa14.64□□□□□ -0.07
VRK3-217ENST00000599538 OXCT2Q9BYC2 517 aaPredicted RBP14.64□□□□□ -0.07
VRK3-217ENST00000599538 NMUR2Q9GZQ4 415 aa14.64□□□□□ -0.07
VRK3-217ENST00000599538 NACA2Q9H009 215 aa14.64□□□□□ -0.07
VRK3-217ENST00000599538 RHOJQ9H4E5 214 aa14.64□□□□□ -0.07
VRK3-217ENST00000599538 ARNT2Q9HBZ2 717 aa14.64□□□□□ -0.07
VRK3-217ENST00000599538 ARL8BQ9NVJ2 186 aa14.64□□□□□ -0.07
VRK3-217ENST00000599538 THAP1Q9NVV9 213 aa14.64□□□□□ -0.07
VRK3-217ENST00000599538 CPSF2Q9P2I0 782 aaKnown RBP14.64□□□□□ -0.07
VRK3-217ENST00000599538 UXTQ9UBK9 157 aaPredicted RBP14.64□□□□□ -0.07
VRK3-217ENST00000599538 AFF4Q9UHB7 1163 aaKnown RBP14.64□□□□□ -0.07
VRK3-217ENST00000599538 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP14.63□□□□□ -0.07
VRK3-217ENST00000599538 G3V2L1 256 aa14.63□□□□□ -0.07
VRK3-217ENST00000599538 H3BNC9 293 aa14.63□□□□□ -0.07
VRK3-217ENST00000599538 ABLIM3O94929 683 aa14.63□□□□□ -0.07
VRK3-217ENST00000599538 HOXD9P28356 352 aaPredicted RBP14.63□□□□□ -0.07
VRK3-217ENST00000599538 AQP5P55064 265 aa14.63□□□□□ -0.07
VRK3-217ENST00000599538 PLD1Q13393 1074 aa14.63□□□□□ -0.07
VRK3-217ENST00000599538 ITGA9Q13797 1035 aa14.63□□□□□ -0.07
VRK3-217ENST00000599538 LBRQ14739 615 aaKnown RBP14.63□□□□□ -0.07
VRK3-217ENST00000599538 PARP15Q460N3 678 aa14.63□□□□□ -0.07
VRK3-217ENST00000599538 CNKSR3Q6P9H4 555 aa14.63□□□□□ -0.07
VRK3-217ENST00000599538 CEP97Q8IW35 865 aa14.63□□□□□ -0.07
VRK3-217ENST00000599538 CCDC117Q8IWD4 279 aaPredicted RBP14.63□□□□□ -0.07
VRK3-217ENST00000599538 CNTN4Q8IWV2 1026 aa14.63□□□□□ -0.07
VRK3-217ENST00000599538 PARP9Q8IXQ6 854 aa14.63□□□□□ -0.07
VRK3-217ENST00000599538 RAB3IL1Q8TBN0 382 aa14.63□□□□□ -0.07
VRK3-217ENST00000599538 FATE1Q969F0 183 aa14.63□□□□□ -0.07
VRK3-217ENST00000599538 TOP1MTQ969P6 601 aa14.63□□□□□ -0.07
VRK3-217ENST00000599538 TADA1Q96BN2 335 aa14.63□□□□□ -0.07
VRK3-217ENST00000599538 TOX2Q96NM4 488 aa14.63□□□□□ -0.07
VRK3-217ENST00000599538 SORT1Q99523 831 aa14.63□□□□□ -0.07
VRK3-217ENST00000599538 SEMA3CQ99985 751 aa14.63□□□□□ -0.07
VRK3-217ENST00000599538 PDFQ9HBH1 243 aa14.63□□□□□ -0.07
VRK3-217ENST00000599538 TMEM51Q9NW97 253 aa14.63□□□□□ -0.07
VRK3-217ENST00000599538 ARMCX1Q9P291 453 aa14.63□□□□□ -0.07
VRK3-217ENST00000599538 KCTD3Q9Y597 815 aa14.63□□□□□ -0.07
VRK3-217ENST00000599538 PALM2-AKAP2B1ALY0 433 aaPredicted RBP14.63□□□□□ -0.07
VRK3-217ENST00000599538 PRAMEF11O60813 436 aa14.63□□□□□ -0.07
VRK3-217ENST00000599538 STC2O76061 302 aa14.63□□□□□ -0.07
VRK3-217ENST00000599538 HAUS5O94927 633 aa14.63□□□□□ -0.07
VRK3-217ENST00000599538 SOD2P04179 222 aa14.63□□□□□ -0.07
VRK3-217ENST00000599538 SLC35E2BP0CK96 405 aa14.63□□□□□ -0.07
VRK3-217ENST00000599538 IRF1P10914 325 aa14.63□□□□□ -0.07
VRK3-217ENST00000599538 CPA3P15088 417 aa14.63□□□□□ -0.07
VRK3-217ENST00000599538 SLC1A6P48664 564 aa14.63□□□□□ -0.07
VRK3-217ENST00000599538 USP10Q14694 798 aaKnown RBP14.63□□□□□ -0.07
VRK3-217ENST00000599538 SIRPB2Q5JXA9 342 aa14.63□□□□□ -0.07
VRK3-217ENST00000599538 HECTD3Q5T447 861 aa14.63□□□□□ -0.07
VRK3-217ENST00000599538 ZNF470Q6ECI4 717 aa14.63□□□□□ -0.07
VRK3-217ENST00000599538 NAPRTQ6XQN6 538 aa14.63□□□□□ -0.07
VRK3-217ENST00000599538 RAPH1Q70E73 1250 aa14.63□□□□□ -0.07
VRK3-217ENST00000599538 CRLF3Q8IUI8 442 aa14.63□□□□□ -0.07
VRK3-217ENST00000599538 SPATA6LQ8N4H0 392 aa14.63□□□□□ -0.07
VRK3-217ENST00000599538 TMEM151AQ8N4L1 468 aa14.63□□□□□ -0.07
VRK3-217ENST00000599538 C1QTNF1Q9BXJ1 281 aa14.63□□□□□ -0.07
VRK3-217ENST00000599538 UNKQ9C0B0 810 aaKnown RBP14.63□□□□□ -0.07
VRK3-217ENST00000599538 TXLNGQ9NUQ3 528 aa14.63□□□□□ -0.07
VRK3-217ENST00000599538 TMEM39AQ9NV64 488 aa14.63□□□□□ -0.07
VRK3-217ENST00000599538 DNAJC16Q9Y2G8 782 aa14.63□□□□□ -0.07
VRK3-217ENST00000599538 YIPF1Q9Y548 306 aa14.63□□□□□ -0.07
VRK3-217ENST00000599538 KIAA0100Q14667 2235 aaKnown RBP14.62□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms