RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 KCNK12Q9HB15 430 aa15.46■□□□□ 0.07
TRIM28-209ENST00000597423 ELOVL2Q9NXB9 296 aa15.46■□□□□ 0.07
TRIM28-209ENST00000597423 GTSE1Q9NYZ3 720 aa15.46■□□□□ 0.07
TRIM28-209ENST00000597423 BFARQ9NZS9 450 aa15.46■□□□□ 0.07
TRIM28-209ENST00000597423 ERVW-1Q9UQF0 538 aa15.46■□□□□ 0.07
TRIM28-209ENST00000597423 NUP205Q92621 2012 aa15.46■□□□□ 0.07
TRIM28-209ENST00000597423 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP15.45■□□□□ 0.06
TRIM28-209ENST00000597423 TCRBV7S3A2A0A539 114 aa15.45■□□□□ 0.06
TRIM28-209ENST00000597423 MAGEB16A2A368 324 aa15.45■□□□□ 0.06
TRIM28-209ENST00000597423 SDR42E2A6NKP2 422 aa15.45■□□□□ 0.06
TRIM28-209ENST00000597423 F5H423 210 aaPredicted RBP15.45■□□□□ 0.06
TRIM28-209ENST00000597423 ALOX15BO15296 676 aa15.45■□□□□ 0.06
TRIM28-209ENST00000597423 PMPCBO75439 489 aa15.45■□□□□ 0.06
TRIM28-209ENST00000597423 CD160O95971 181 aa15.45■□□□□ 0.06
TRIM28-209ENST00000597423 IGSF6O95976 241 aa15.45■□□□□ 0.06
TRIM28-209ENST00000597423 MT-CO1P00395 513 aa15.45■□□□□ 0.06
TRIM28-209ENST00000597423 FAM153BP0C7A2 387 aa15.45■□□□□ 0.06
TRIM28-209ENST00000597423 GLULP15104 373 aa15.45■□□□□ 0.06
TRIM28-209ENST00000597423 MAGEA4P43358 317 aa15.45■□□□□ 0.06
TRIM28-209ENST00000597423 PMS2P54278 862 aa15.45■□□□□ 0.06
TRIM28-209ENST00000597423 WNT3AP56704 352 aa15.45■□□□□ 0.06
TRIM28-209ENST00000597423 AP1S1P61966 158 aa15.45■□□□□ 0.06
TRIM28-209ENST00000597423 DSC2Q02487 901 aa15.45■□□□□ 0.06
TRIM28-209ENST00000597423 GRM3Q14832 879 aa15.45■□□□□ 0.06
TRIM28-209ENST00000597423 GEN1Q17RS7 908 aa15.45■□□□□ 0.06
TRIM28-209ENST00000597423 FAM153CQ494X1 144 aa15.45■□□□□ 0.06
TRIM28-209ENST00000597423 CFAP58Q5T655 872 aa15.45■□□□□ 0.06
TRIM28-209ENST00000597423 ARMC3Q5W041 872 aa15.45■□□□□ 0.06
TRIM28-209ENST00000597423 KCTD11Q693B1 232 aa15.45■□□□□ 0.06
TRIM28-209ENST00000597423 SRLQ86TD4 932 aa15.45■□□□□ 0.06
TRIM28-209ENST00000597423 CCNJLQ8IV13 435 aa15.45■□□□□ 0.06
TRIM28-209ENST00000597423 PGBD5Q8N414 524 aa15.45■□□□□ 0.06
TRIM28-209ENST00000597423 MREGQ8N565 214 aa15.45■□□□□ 0.06
TRIM28-209ENST00000597423 SH2D3CQ8N5H7 860 aa15.45■□□□□ 0.06
TRIM28-209ENST00000597423 IPMKQ8NFU5 416 aa15.45■□□□□ 0.06
TRIM28-209ENST00000597423 SPATA22Q8NHS9 363 aa15.45■□□□□ 0.06
TRIM28-209ENST00000597423 ARRDC2Q8TBH0 407 aa15.45■□□□□ 0.06
TRIM28-209ENST00000597423 PYROXD1Q8WU10 500 aa15.45■□□□□ 0.06
TRIM28-209ENST00000597423 DNASE1L2Q92874 299 aa15.45■□□□□ 0.06
TRIM28-209ENST00000597423 GDAP1L1Q96MZ0 367 aa15.45■□□□□ 0.06
TRIM28-209ENST00000597423 SERPINB12Q96P63 405 aa15.45■□□□□ 0.06
TRIM28-209ENST00000597423 TBL1YQ9BQ87 522 aa15.45■□□□□ 0.06
TRIM28-209ENST00000597423 NAT9Q9BTE0 207 aa15.45■□□□□ 0.06
TRIM28-209ENST00000597423 SAYSD1Q9NPB0 183 aa15.45■□□□□ 0.06
TRIM28-209ENST00000597423 UBP1Q9NZI7 540 aa15.45■□□□□ 0.06
TRIM28-209ENST00000597423 FCF1Q9Y324 198 aaKnown RBP15.45■□□□□ 0.06
TRIM28-209ENST00000597423 OTOL1A6NHN0 477 aaPredicted RBP15.44■□□□□ 0.06
TRIM28-209ENST00000597423 ARNTLO00327 626 aa15.44■□□□□ 0.06
TRIM28-209ENST00000597423 NPC1O15118 1278 aa15.44■□□□□ 0.06
TRIM28-209ENST00000597423 ATP8B1O43520 1251 aa15.44■□□□□ 0.06
TRIM28-209ENST00000597423 ATP9BO43861 1147 aa15.44■□□□□ 0.06
TRIM28-209ENST00000597423 TMEM63AO94886 807 aa15.44■□□□□ 0.06
TRIM28-209ENST00000597423 POP4O95707 220 aaKnown RBP15.44■□□□□ 0.06
TRIM28-209ENST00000597423 GSRP00390 522 aa15.44■□□□□ 0.06
TRIM28-209ENST00000597423 SRCP12931 536 aa15.44■□□□□ 0.06
TRIM28-209ENST00000597423 TSHRP16473 764 aa15.44■□□□□ 0.06
TRIM28-209ENST00000597423 TNFRSF4P43489 277 aa15.44■□□□□ 0.06
TRIM28-209ENST00000597423 NUMBP49757 651 aa15.44■□□□□ 0.06
TRIM28-209ENST00000597423 SKOR1P84550 965 aa15.44■□□□□ 0.06
TRIM28-209ENST00000597423 NIPAL4Q0D2K0 466 aa15.44■□□□□ 0.06
TRIM28-209ENST00000597423 CDH17Q12864 832 aa15.44■□□□□ 0.06
TRIM28-209ENST00000597423 PDIA2Q13087 525 aaKnown RBP15.44■□□□□ 0.06
TRIM28-209ENST00000597423 LAMB3Q13751 1172 aa15.44■□□□□ 0.06
TRIM28-209ENST00000597423 DLG2Q15700 870 aa15.44■□□□□ 0.06
TRIM28-209ENST00000597423 BBS9Q3SYG4 887 aa15.44■□□□□ 0.06
TRIM28-209ENST00000597423 CARD16Q5EG05 197 aa15.44■□□□□ 0.06
TRIM28-209ENST00000597423 SYCP2LQ5T4T6 812 aa15.44■□□□□ 0.06
TRIM28-209ENST00000597423 TMC3Q7Z5M5 1100 aa15.44■□□□□ 0.06
TRIM28-209ENST00000597423 PRPF39Q86UA1 669 aaKnown RBP15.44■□□□□ 0.06
TRIM28-209ENST00000597423 RALGPS2Q86X27 583 aaPredicted RBP15.44■□□□□ 0.06
TRIM28-209ENST00000597423 PALM2Q8IXS6 379 aa15.44■□□□□ 0.06
TRIM28-209ENST00000597423 RYBPQ8N488 228 aaPredicted RBP15.44■□□□□ 0.06
TRIM28-209ENST00000597423 TERB1Q8NA31 727 aa15.44■□□□□ 0.06
TRIM28-209ENST00000597423 TTC8Q8TAM2 541 aa15.44■□□□□ 0.06
TRIM28-209ENST00000597423 TADA1Q96BN2 335 aa15.44■□□□□ 0.06
TRIM28-209ENST00000597423 MSANTD3Q96H12 275 aa15.44■□□□□ 0.06
TRIM28-209ENST00000597423 OXNAD1Q96HP4 312 aaPredicted RBP15.44■□□□□ 0.06
TRIM28-209ENST00000597423 FEM1CQ96JP0 617 aa15.44■□□□□ 0.06
TRIM28-209ENST00000597423 RPL10LQ96L21 214 aaKnown RBP15.44■□□□□ 0.06
TRIM28-209ENST00000597423 MLPHQ9BV36 600 aaPredicted RBP15.44■□□□□ 0.06
TRIM28-209ENST00000597423 ADGRE3Q9BY15 652 aa15.44■□□□□ 0.06
TRIM28-209ENST00000597423 ACBD3Q9H3P7 528 aa15.44■□□□□ 0.06
TRIM28-209ENST00000597423 NOD2Q9HC29 1040 aa15.44■□□□□ 0.06
TRIM28-209ENST00000597423 CASS4Q9NQ75 786 aa15.44■□□□□ 0.06
TRIM28-209ENST00000597423 A0A1W2PQ67 120 aa15.43■□□□□ 0.06
TRIM28-209ENST00000597423 E7ESA3 106 aa15.43■□□□□ 0.06
TRIM28-209ENST00000597423 K7ERQ8 282 aa15.43■□□□□ 0.06
TRIM28-209ENST00000597423 KAT7O95251 611 aa15.43■□□□□ 0.06
TRIM28-209ENST00000597423 MT-CYBP00156 380 aaPredicted RBP15.43■□□□□ 0.06
TRIM28-209ENST00000597423 CR2P20023 1033 aa15.43■□□□□ 0.06
TRIM28-209ENST00000597423 OPRD1P41143 372 aa15.43■□□□□ 0.06
TRIM28-209ENST00000597423 CTSOP43234 321 aaPredicted RBP15.43■□□□□ 0.06
TRIM28-209ENST00000597423 CDK18Q07002 472 aa15.43■□□□□ 0.06
TRIM28-209ENST00000597423 GAB4Q2WGN9 574 aa15.43■□□□□ 0.06
TRIM28-209ENST00000597423 FNBP1LQ5T0N5 605 aa15.43■□□□□ 0.06
TRIM28-209ENST00000597423 NCEH1Q6PIU2 408 aa15.43■□□□□ 0.06
TRIM28-209ENST00000597423 KDELC1Q6UW63 502 aa15.43■□□□□ 0.06
TRIM28-209ENST00000597423 RANBP10Q6VN20 620 aa15.43■□□□□ 0.06
TRIM28-209ENST00000597423 CAND1Q86VP6 1230 aaKnown RBP15.43■□□□□ 0.06
TRIM28-209ENST00000597423 C12orf40Q86WS4 652 aa15.43■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 80.9 ms