RNA–Protein interactions for RNA: ENST00000596121.5

VRK3-210, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 983 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-210ENST00000596121 GEMIN4P57678 1058 aaKnown RBP11.32□□□□□ -0.6
VRK3-210ENST00000596121 RHOAP61586 193 aa11.32□□□□□ -0.6
VRK3-210ENST00000596121 SLC10A7Q0GE19 358 aa11.32□□□□□ -0.6
VRK3-210ENST00000596121 SLC10A2Q12908 348 aaPredicted RBP11.32□□□□□ -0.6
VRK3-210ENST00000596121 SPA17Q15506 151 aa11.32□□□□□ -0.6
VRK3-210ENST00000596121 DUOXA1Q1HG43 343 aa11.32□□□□□ -0.6
VRK3-210ENST00000596121 AASDHQ4L235 1098 aaPredicted RBP11.32□□□□□ -0.6
VRK3-210ENST00000596121 WDR45BQ5MNZ6 344 aa11.32□□□□□ -0.6
VRK3-210ENST00000596121 FAM182AQ5T1J6 154 aa11.32□□□□□ -0.6
VRK3-210ENST00000596121 SYCP2LQ5T4T6 812 aa11.32□□□□□ -0.6
VRK3-210ENST00000596121 LAYNQ6UX15 382 aa11.32□□□□□ -0.6
VRK3-210ENST00000596121 PARS2Q7L3T8 475 aaKnown RBP11.32□□□□□ -0.6
VRK3-210ENST00000596121 PGBD5Q8N414 524 aa11.32□□□□□ -0.6
VRK3-210ENST00000596121 RYBPQ8N488 228 aaPredicted RBP11.32□□□□□ -0.6
VRK3-210ENST00000596121 TSEN2Q8NCE0 465 aaKnown RBP11.32□□□□□ -0.6
VRK3-210ENST00000596121 CASKIN2Q8WXE0 1202 aa11.32□□□□□ -0.6
VRK3-210ENST00000596121 SNX19Q92543 992 aa11.32□□□□□ -0.6
VRK3-210ENST00000596121 CCDC114Q96M63 670 aa11.32□□□□□ -0.6
VRK3-210ENST00000596121 DESI2Q9BSY9 194 aa11.32□□□□□ -0.6
VRK3-210ENST00000596121 ANP32EQ9BTT0 268 aa11.32□□□□□ -0.6
VRK3-210ENST00000596121 CALN1Q9BXU9 219 aa11.32□□□□□ -0.6
VRK3-210ENST00000596121 HDAC8Q9BY41 377 aa11.32□□□□□ -0.6
VRK3-210ENST00000596121 MIR1-1HGQ9H1L0 117 aa11.32□□□□□ -0.6
VRK3-210ENST00000596121 DLL3Q9NYJ7 618 aa11.32□□□□□ -0.6
VRK3-210ENST00000596121 RCOR3Q9P2K3 495 aaPredicted RBP11.32□□□□□ -0.6
VRK3-210ENST00000596121 LCMT1Q9UIC8 334 aa11.32□□□□□ -0.6
VRK3-210ENST00000596121 SLC6A14Q9UN76 642 aa11.32□□□□□ -0.6
VRK3-210ENST00000596121 PCDH15Q96QU1 1955 aa11.32□□□□□ -0.6
VRK3-210ENST00000596121 TBC1D3DA0A087WVF3 549 aa11.31□□□□□ -0.6
VRK3-210ENST00000596121 TBC1D3IA0A087WXS9 549 aa11.31□□□□□ -0.6
VRK3-210ENST00000596121 TBC1D3EA0A087X179 549 aa11.31□□□□□ -0.6
VRK3-210ENST00000596121 TBC1D3KA0A087X1G2 549 aa11.31□□□□□ -0.6
VRK3-210ENST00000596121 A0A0A6YYK5 440 aaPredicted RBP11.31□□□□□ -0.6
VRK3-210ENST00000596121 TBC1D3FA6NER0 549 aaPredicted RBP11.31□□□□□ -0.6
VRK3-210ENST00000596121 C16orf96A6NNT2 1141 aa11.31□□□□□ -0.6
VRK3-210ENST00000596121 PRR5-ARHGAP8B1AHC4 643 aa11.31□□□□□ -0.6
VRK3-210ENST00000596121 TBC1D3LB9A6J9 549 aa11.31□□□□□ -0.6
VRK3-210ENST00000596121 TM4SF5O14894 197 aa11.31□□□□□ -0.6
VRK3-210ENST00000596121 SLC7A4O43246 635 aa11.31□□□□□ -0.6
VRK3-210ENST00000596121 LATO43561 262 aa11.31□□□□□ -0.6
VRK3-210ENST00000596121 POP4O95707 220 aaKnown RBP11.31□□□□□ -0.6
VRK3-210ENST00000596121 WNT1P04628 370 aa11.31□□□□□ -0.6
VRK3-210ENST00000596121 CFIP05156 583 aa11.31□□□□□ -0.6
VRK3-210ENST00000596121 UGT2B4P06133 528 aa11.31□□□□□ -0.6
VRK3-210ENST00000596121 TBC1D3HP0C7X1 549 aa11.31□□□□□ -0.6
VRK3-210ENST00000596121 TNNT1P13805 278 aa11.31□□□□□ -0.6
VRK3-210ENST00000596121 ENGP17813 658 aa11.31□□□□□ -0.6
VRK3-210ENST00000596121 ITGB7P26010 798 aa11.31□□□□□ -0.6
VRK3-210ENST00000596121 CD27P26842 260 aa11.31□□□□□ -0.6
VRK3-210ENST00000596121 HOXD12P35452 270 aa11.31□□□□□ -0.6
VRK3-210ENST00000596121 ABL2P42684 1182 aa11.31□□□□□ -0.6
VRK3-210ENST00000596121 NOP2P46087 812 aaKnown RBP11.31□□□□□ -0.6
VRK3-210ENST00000596121 CSNK1EP49674 416 aaKnown RBP11.31□□□□□ -0.6
VRK3-210ENST00000596121 CCR5P51681 352 aa11.31□□□□□ -0.6
VRK3-210ENST00000596121 SNRPD1P62314 119 aaKnown RBP11.31□□□□□ -0.6
VRK3-210ENST00000596121 ARHGAP8P85298 464 aa11.31□□□□□ -0.6
VRK3-210ENST00000596121 GBE1Q04446 702 aa11.31□□□□□ -0.6
VRK3-210ENST00000596121 IL10RBQ08334 325 aa11.31□□□□□ -0.6
VRK3-210ENST00000596121 SFSWAPQ12872 951 aaKnown RBP11.31□□□□□ -0.6
VRK3-210ENST00000596121 PAFAH1B3Q15102 231 aaKnown RBP11.31□□□□□ -0.6
VRK3-210ENST00000596121 PDK2Q15119 407 aa11.31□□□□□ -0.6
VRK3-210ENST00000596121 STPG1Q5TH74 334 aa11.31□□□□□ -0.6
VRK3-210ENST00000596121 LRRC38Q5VT99 294 aa11.31□□□□□ -0.6
VRK3-210ENST00000596121 TBC1D3GQ6DHY5 549 aa11.31□□□□□ -0.6
VRK3-210ENST00000596121 TBC1D3CQ6IPX1 549 aa11.31□□□□□ -0.6
VRK3-210ENST00000596121 ERN2Q76MJ5 926 aaKnown RBP11.31□□□□□ -0.6
VRK3-210ENST00000596121 ZSWIM9Q86XI8 627 aa11.31□□□□□ -0.6
VRK3-210ENST00000596121 TBC1D3Q8IZP1 549 aaPredicted RBP11.31□□□□□ -0.6
VRK3-210ENST00000596121 LZTR1Q8N653 840 aa11.31□□□□□ -0.6
VRK3-210ENST00000596121 C12orf50Q8NA57 414 aaPredicted RBP11.31□□□□□ -0.6
VRK3-210ENST00000596121 TPCN2Q8NHX9 752 aa11.31□□□□□ -0.6
VRK3-210ENST00000596121 GDAP1L1Q96MZ0 367 aa11.31□□□□□ -0.6
VRK3-210ENST00000596121 KLHL32Q96NJ5 620 aa11.31□□□□□ -0.6
VRK3-210ENST00000596121 RNF157Q96PX1 679 aa11.31□□□□□ -0.6
VRK3-210ENST00000596121 ZNF670Q9BS34 389 aa11.31□□□□□ -0.6
VRK3-210ENST00000596121 EDEM2Q9BV94 578 aa11.31□□□□□ -0.6
VRK3-210ENST00000596121 TM9SF3Q9HD45 589 aa11.31□□□□□ -0.6
VRK3-210ENST00000596121 DONSONQ9NYP3 566 aa11.31□□□□□ -0.6
VRK3-210ENST00000596121 TRIM10Q9UDY6 481 aa11.31□□□□□ -0.6
VRK3-210ENST00000596121 GGT7Q9UJ14 662 aa11.31□□□□□ -0.6
VRK3-210ENST00000596121 ZFR2Q9UPR6 939 aaKnown RBP11.31□□□□□ -0.6
VRK3-210ENST00000596121 FARP1Q9Y4F1 1045 aaPredicted RBP11.31□□□□□ -0.6
VRK3-210ENST00000596121 ADAMTS9Q9P2N4 1935 aa11.31□□□□□ -0.6
VRK3-210ENST00000596121 SPTBN2O15020 2390 aa11.31□□□□□ -0.6
VRK3-210ENST00000596121 CNOT1A5YKK6 2376 aaKnown RBP11.3□□□□□ -0.6
VRK3-210ENST00000596121 A0A1B0GTW7 788 aa11.3□□□□□ -0.6
VRK3-210ENST00000596121 A0A1B0GVT2 93 aa11.3□□□□□ -0.6
VRK3-210ENST00000596121 A0A1W2PPC4 97 aa11.3□□□□□ -0.6
VRK3-210ENST00000596121 LRRD1A4D1F6 860 aa11.3□□□□□ -0.6
VRK3-210ENST00000596121 LRRC72A6NJI9 287 aa11.3□□□□□ -0.6
VRK3-210ENST00000596121 C4orf47A7E2U8 309 aa11.3□□□□□ -0.6
VRK3-210ENST00000596121 ARHGAP33O14559 1287 aa11.3□□□□□ -0.6
VRK3-210ENST00000596121 SLC30A4O14863 429 aa11.3□□□□□ -0.6
VRK3-210ENST00000596121 BCAT2O15382 392 aaPredicted RBP11.3□□□□□ -0.6
VRK3-210ENST00000596121 PJA2O43164 708 aa11.3□□□□□ -0.6
VRK3-210ENST00000596121 RNGTTO60942 597 aaKnown RBP11.3□□□□□ -0.6
VRK3-210ENST00000596121 PALMO75781 387 aa11.3□□□□□ -0.6
VRK3-210ENST00000596121 PIGNO95427 931 aa11.3□□□□□ -0.6
VRK3-210ENST00000596121 ADRB3P13945 408 aa11.3□□□□□ -0.6
VRK3-210ENST00000596121 TIMP2P16035 220 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms