RNA–Protein interactions for RNA: ENST00000582448.5

SS18-221, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 585 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-221ENST00000582448 CYP2S1Q96SQ9 504 aa10.56□□□□□ -0.72
SS18-221ENST00000582448 KRT12Q99456 494 aa10.56□□□□□ -0.72
SS18-221ENST00000582448 KRTAP9-2Q9BYQ4 174 aa10.56□□□□□ -0.72
SS18-221ENST00000582448 HOMER3Q9NSC5 361 aa10.56□□□□□ -0.72
SS18-221ENST00000582448 EHD2Q9NZN4 543 aa10.56□□□□□ -0.72
SS18-221ENST00000582448 HSFX1Q9UBD0 423 aa10.56□□□□□ -0.72
SS18-221ENST00000582448 RASAL2Q9UJF2 1139 aa10.56□□□□□ -0.72
SS18-221ENST00000582448 CDH9Q9ULB4 789 aa10.56□□□□□ -0.72
SS18-221ENST00000582448 WNT6Q9Y6F9 365 aa10.56□□□□□ -0.72
SS18-221ENST00000582448 ANK1P16157 1881 aa10.55□□□□□ -0.72
SS18-221ENST00000582448 KIF26AQ9ULI4 1882 aaPredicted RBP10.55□□□□□ -0.72
SS18-221ENST00000582448 ANTXRLA6NF34 631 aa10.55□□□□□ -0.72
SS18-221ENST00000582448 SRRM3A6NNA2 597 aaPredicted RBP10.55□□□□□ -0.72
SS18-221ENST00000582448 E5RJQ4 531 aa10.55□□□□□ -0.72
SS18-221ENST00000582448 CDX4O14627 284 aaPredicted RBP10.55□□□□□ -0.72
SS18-221ENST00000582448 GABRDO14764 452 aa10.55□□□□□ -0.72
SS18-221ENST00000582448 FAM200BP0CF97 657 aa10.55□□□□□ -0.72
SS18-221ENST00000582448 CSH1P0DML2 217 aa10.55□□□□□ -0.72
SS18-221ENST00000582448 CSH2P0DML3 217 aa10.55□□□□□ -0.72
SS18-221ENST00000582448 CEACAM1P13688 526 aa10.55□□□□□ -0.72
SS18-221ENST00000582448 CCDC130P13994 396 aa10.55□□□□□ -0.72
SS18-221ENST00000582448 HMGA1P17096 107 aaKnown RBP10.55□□□□□ -0.72
SS18-221ENST00000582448 BCKDHBP21953 392 aa10.55□□□□□ -0.72
SS18-221ENST00000582448 LMO2P25791 158 aa10.55□□□□□ -0.72
SS18-221ENST00000582448 DDX6P26196 483 aaKnown RBP eCLIP10.55□□□□□ -0.72
SS18-221ENST00000582448 GJC1P36383 396 aa10.55□□□□□ -0.72
SS18-221ENST00000582448 TSPY1Q01534 308 aa10.55□□□□□ -0.72
SS18-221ENST00000582448 DDR2Q16832 855 aa10.55□□□□□ -0.72
SS18-221ENST00000582448 TSNAXIP1Q2TAA8 658 aa10.55□□□□□ -0.72
SS18-221ENST00000582448 ANO7Q6IWH7 933 aa10.55□□□□□ -0.72
SS18-221ENST00000582448 FBXO38Q6PIJ6 1188 aa10.55□□□□□ -0.72
SS18-221ENST00000582448 BNC2Q6ZN30 1099 aaPredicted RBP10.55□□□□□ -0.72
SS18-221ENST00000582448 TMEM110Q86TL2 294 aa10.55□□□□□ -0.72
SS18-221ENST00000582448 MON1AQ86VX9 555 aa10.55□□□□□ -0.72
SS18-221ENST00000582448 KATNAL2Q8IYT4 538 aa10.55□□□□□ -0.72
SS18-221ENST00000582448 RCOR2Q8IZ40 523 aa10.55□□□□□ -0.72
SS18-221ENST00000582448 CCDC33Q8N5R6 958 aa10.55□□□□□ -0.72
SS18-221ENST00000582448 AGBL5Q8NDL9 886 aa10.55□□□□□ -0.72
SS18-221ENST00000582448 EXD1Q8NHP7 514 aa10.55□□□□□ -0.72
SS18-221ENST00000582448 ZCCHC14Q8WYQ9 949 aaKnown RBP10.55□□□□□ -0.72
SS18-221ENST00000582448 ALG3Q92685 438 aa10.55□□□□□ -0.72
SS18-221ENST00000582448 KRT35Q92764 455 aa10.55□□□□□ -0.72
SS18-221ENST00000582448 HSFY1Q96LI6 401 aa10.55□□□□□ -0.72
SS18-221ENST00000582448 HNRNPABQ99729 332 aaKnown RBP10.55□□□□□ -0.72
SS18-221ENST00000582448 SYT15Q9BQS2 421 aa10.55□□□□□ -0.72
SS18-221ENST00000582448 AP1M1Q9BXS5 423 aa10.55□□□□□ -0.72
SS18-221ENST00000582448 DPEP3Q9H4B8 488 aa10.55□□□□□ -0.72
SS18-221ENST00000582448 ANKZF1Q9H8Y5 726 aa10.55□□□□□ -0.72
SS18-221ENST00000582448 KIF9Q9HAQ2 790 aa10.55□□□□□ -0.72
SS18-221ENST00000582448 LRRC4Q9HBW1 653 aa10.55□□□□□ -0.72
SS18-221ENST00000582448 METTL5Q9NRN9 209 aaKnown RBP10.55□□□□□ -0.72
SS18-221ENST00000582448 TMLHEQ9NVH6 421 aa10.55□□□□□ -0.72
SS18-221ENST00000582448 SMARCAL1Q9NZC9 954 aa10.55□□□□□ -0.72
SS18-221ENST00000582448 EBF1Q9UH73 591 aa10.55□□□□□ -0.72
SS18-221ENST00000582448 FEZ2Q9UHY8 353 aaPredicted RBP10.55□□□□□ -0.72
SS18-221ENST00000582448 ZMYM5Q9UJ78 669 aa10.55□□□□□ -0.72
SS18-221ENST00000582448 KRTAP9-1A8MXZ3 250 aaPredicted RBP10.54□□□□□ -0.72
SS18-221ENST00000582448 XPO1O14980 1071 aaKnown RBP10.54□□□□□ -0.72
SS18-221ENST00000582448 KRT1P04264 644 aa10.54□□□□□ -0.72
SS18-221ENST00000582448 PYGMP11217 842 aa10.54□□□□□ -0.72
SS18-221ENST00000582448 H2AFXP16104 143 aaPredicted RBP10.54□□□□□ -0.72
SS18-221ENST00000582448 GPD1P21695 349 aa10.54□□□□□ -0.72
SS18-221ENST00000582448 SDC4P31431 198 aa10.54□□□□□ -0.72
SS18-221ENST00000582448 CHRNA3P32297 505 aa10.54□□□□□ -0.72
SS18-221ENST00000582448 RFC1P35251 1148 aaPredicted RBP10.54□□□□□ -0.72
SS18-221ENST00000582448 RGS7P49802 495 aa10.54□□□□□ -0.72
SS18-221ENST00000582448 RPL7AP62424 266 aaKnown RBP10.54□□□□□ -0.72
SS18-221ENST00000582448 SLC6A3Q01959 620 aa10.54□□□□□ -0.72
SS18-221ENST00000582448 DHX34Q14147 1143 aaKnown RBP10.54□□□□□ -0.72
SS18-221ENST00000582448 NKPD1Q17RQ9 610 aa10.54□□□□□ -0.72
SS18-221ENST00000582448 MDH1BQ5I0G3 518 aa10.54□□□□□ -0.72
SS18-221ENST00000582448 EFHC1Q5JVL4 640 aa10.54□□□□□ -0.72
SS18-221ENST00000582448 PRAMEF13Q5VWM6 474 aa10.54□□□□□ -0.72
SS18-221ENST00000582448 PMS2CLQ68D20 193 aa10.54□□□□□ -0.72
SS18-221ENST00000582448 POLNQ7Z5Q5 900 aa10.54□□□□□ -0.72
SS18-221ENST00000582448 SPACA3Q8IXA5 215 aa10.54□□□□□ -0.72
SS18-221ENST00000582448 SIX6OS1Q8N1H7 587 aa10.54□□□□□ -0.72
SS18-221ENST00000582448 ARL14EPQ8N8R7 260 aaPredicted RBP10.54□□□□□ -0.72
SS18-221ENST00000582448 C2orf15Q8WU43 125 aaKnown RBP10.54□□□□□ -0.72
SS18-221ENST00000582448 SLC35F5Q8WV83 523 aa10.54□□□□□ -0.72
SS18-221ENST00000582448 HNRNPLLQ8WVV9 542 aaKnown RBP10.54□□□□□ -0.72
SS18-221ENST00000582448 RLN3Q8WXF3 142 aa10.54□□□□□ -0.72
SS18-221ENST00000582448 ATP2A3Q93084 1043 aa10.54□□□□□ -0.72
SS18-221ENST00000582448 MIPEPQ99797 713 aa10.54□□□□□ -0.72
SS18-221ENST00000582448 ACBD6Q9BR61 282 aa10.54□□□□□ -0.72
SS18-221ENST00000582448 CNPY3Q9BT09 278 aa10.54□□□□□ -0.72
SS18-221ENST00000582448 LRRC1Q9BTT6 524 aa10.54□□□□□ -0.72
SS18-221ENST00000582448 DUSP16Q9BY84 665 aa10.54□□□□□ -0.72
SS18-221ENST00000582448 TRIM7Q9C029 511 aa10.54□□□□□ -0.72
SS18-221ENST00000582448 RAB17Q9H0T7 212 aa10.54□□□□□ -0.72
SS18-221ENST00000582448 LINC00597Q9H2U6 94 aa10.54□□□□□ -0.72
SS18-221ENST00000582448 SLTMQ9NWH9 1034 aaKnown RBP eCLIP10.54□□□□□ -0.72
SS18-221ENST00000582448 TJP2Q9UDY2 1190 aa10.54□□□□□ -0.72
SS18-221ENST00000582448 CYTH4Q9UIA0 394 aa10.54□□□□□ -0.72
SS18-221ENST00000582448 TMEM59LQ9UK28 342 aa10.54□□□□□ -0.72
SS18-221ENST00000582448 RAB21Q9UL25 225 aa10.54□□□□□ -0.72
SS18-221ENST00000582448 USP24Q9UPU5 2620 aa10.54□□□□□ -0.72
SS18-221ENST00000582448 UTP11Q9Y3A2 253 aaKnown RBP10.54□□□□□ -0.72
SS18-221ENST00000582448 SPAG17Q6Q759 2223 aa10.53□□□□□ -0.72
SS18-221ENST00000582448 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa10.53□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms