RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 ARF5P84085 180 aa10.67□□□□□ -0.7
SS18-217ENST00000580958 USP4Q13107 963 aa10.67□□□□□ -0.7
SS18-217ENST00000580958 CDH18Q13634 790 aa10.67□□□□□ -0.7
SS18-217ENST00000580958 IHHQ14623 411 aa10.67□□□□□ -0.7
SS18-217ENST00000580958 CRYMQ14894 314 aa10.67□□□□□ -0.7
SS18-217ENST00000580958 RASA2Q15283 850 aa10.67□□□□□ -0.7
SS18-217ENST00000580958 MPPE1Q53F39 396 aa10.67□□□□□ -0.7
SS18-217ENST00000580958 SPANXN3Q5MJ09 141 aa10.67□□□□□ -0.7
SS18-217ENST00000580958 EMC10Q5UCC4 262 aa10.67□□□□□ -0.7
SS18-217ENST00000580958 DENND5AQ6IQ26 1287 aa10.67□□□□□ -0.7
SS18-217ENST00000580958 ADGRD1Q6QNK2 874 aa10.67□□□□□ -0.7
SS18-217ENST00000580958 ZNF783Q6ZMS7 281 aa10.67□□□□□ -0.7
SS18-217ENST00000580958 TPGS1Q6ZTW0 290 aa10.67□□□□□ -0.7
SS18-217ENST00000580958 CCNJLQ8IV13 435 aa10.67□□□□□ -0.7
SS18-217ENST00000580958 MFN1Q8IWA4 741 aa10.67□□□□□ -0.7
SS18-217ENST00000580958 CTAGE3PQ8IX95 158 aa10.67□□□□□ -0.7
SS18-217ENST00000580958 UNC5BQ8IZJ1 945 aa10.67□□□□□ -0.7
SS18-217ENST00000580958 BBS5Q8N3I7 341 aa10.67□□□□□ -0.7
SS18-217ENST00000580958 VN1R2Q8NFZ6 395 aa10.67□□□□□ -0.7
SS18-217ENST00000580958 ITFG1Q8TB96 612 aa10.67□□□□□ -0.7
SS18-217ENST00000580958 ARRDC2Q8TBH0 407 aa10.67□□□□□ -0.7
SS18-217ENST00000580958 DCAKDQ8WVC6 231 aa10.67□□□□□ -0.7
SS18-217ENST00000580958 SLC44A1Q8WWI5 657 aa10.67□□□□□ -0.7
SS18-217ENST00000580958 ZSWIM3Q96MP5 696 aa10.67□□□□□ -0.7
SS18-217ENST00000580958 FCRL3Q96P31 734 aaPredicted RBP10.67□□□□□ -0.7
SS18-217ENST00000580958 SEMA3CQ99985 751 aa10.67□□□□□ -0.7
SS18-217ENST00000580958 NAT9Q9BTE0 207 aa10.67□□□□□ -0.7
SS18-217ENST00000580958 POLR1EQ9GZS1 481 aaKnown RBP10.67□□□□□ -0.7
SS18-217ENST00000580958 PLK2Q9NYY3 685 aa10.67□□□□□ -0.7
SS18-217ENST00000580958 SAMD15Q9P1V8 674 aa10.67□□□□□ -0.7
SS18-217ENST00000580958 SEPT3Q9UH03 358 aa10.67□□□□□ -0.7
SS18-217ENST00000580958 MRPS23Q9Y3D9 190 aaKnown RBP10.67□□□□□ -0.7
SS18-217ENST00000580958 TRANK1O15050 2925 aa10.66□□□□□ -0.7
SS18-217ENST00000580958 FAM159BA6NKW6 160 aa10.66□□□□□ -0.7
SS18-217ENST00000580958 AP3B1O00203 1094 aa10.66□□□□□ -0.7
SS18-217ENST00000580958 ZNF197O14709 1029 aa10.66□□□□□ -0.7
SS18-217ENST00000580958 UGT1A9O60656 530 aa10.66□□□□□ -0.7
SS18-217ENST00000580958 GJB3O75712 270 aa10.66□□□□□ -0.7
SS18-217ENST00000580958 ZMPSTE24O75844 475 aa10.66□□□□□ -0.7
SS18-217ENST00000580958 INHBAP08476 426 aa10.66□□□□□ -0.7
SS18-217ENST00000580958 CREB1P16220 341 aa10.66□□□□□ -0.7
SS18-217ENST00000580958 CHRNA4P43681 627 aa10.66□□□□□ -0.7
SS18-217ENST00000580958 RGRP47804 291 aa10.66□□□□□ -0.7
SS18-217ENST00000580958 NR1H3Q13133 447 aa10.66□□□□□ -0.7
SS18-217ENST00000580958 RFTN1Q14699 578 aaPredicted RBP10.66□□□□□ -0.7
SS18-217ENST00000580958 CYTH1Q15438 398 aa10.66□□□□□ -0.7
SS18-217ENST00000580958 TERF2Q15554 542 aa10.66□□□□□ -0.7
SS18-217ENST00000580958 ZNF77Q15935 545 aa10.66□□□□□ -0.7
SS18-217ENST00000580958 TTC19Q6DKK2 380 aaPredicted RBP10.66□□□□□ -0.7
SS18-217ENST00000580958 TMC5Q6UXY8 1006 aa10.66□□□□□ -0.7
SS18-217ENST00000580958 TAOK1Q7L7X3 1001 aa10.66□□□□□ -0.7
SS18-217ENST00000580958 KDELC2Q7Z4H8 507 aa10.66□□□□□ -0.7
SS18-217ENST00000580958 TRABD2AQ86V40 505 aa10.66□□□□□ -0.7
SS18-217ENST00000580958 SLC25A41Q8N5S1 370 aa10.66□□□□□ -0.7
SS18-217ENST00000580958 TADA1Q96BN2 335 aa10.66□□□□□ -0.7
SS18-217ENST00000580958 ALG14Q96F25 216 aa10.66□□□□□ -0.7
SS18-217ENST00000580958 FEM1AQ9BSK4 669 aa10.66□□□□□ -0.7
SS18-217ENST00000580958 FSD1LQ9BXM9 530 aa10.66□□□□□ -0.7
SS18-217ENST00000580958 CAPS2Q9BXY5 557 aa10.66□□□□□ -0.7
SS18-217ENST00000580958 IGFLR1Q9H665 355 aa10.66□□□□□ -0.7
SS18-217ENST00000580958 SFXN1Q9H9B4 322 aa10.66□□□□□ -0.7
SS18-217ENST00000580958 SLC28A3Q9HAS3 691 aa10.66□□□□□ -0.7
SS18-217ENST00000580958 UGT1A7Q9HAW7 530 aa10.66□□□□□ -0.7
SS18-217ENST00000580958 UGT1A10Q9HAW8 530 aa10.66□□□□□ -0.7
SS18-217ENST00000580958 UGT1A8Q9HAW9 530 aa10.66□□□□□ -0.7
SS18-217ENST00000580958 VPS45Q9NRW7 570 aa10.66□□□□□ -0.7
SS18-217ENST00000580958 TDP1Q9NUW8 608 aa10.66□□□□□ -0.7
SS18-217ENST00000580958 MOCS1Q9NZB8 636 aa10.66□□□□□ -0.7
SS18-217ENST00000580958 VPS28Q9UK41 221 aa10.66□□□□□ -0.7
SS18-217ENST00000580958 CLEC4EQ9ULY5 219 aa10.66□□□□□ -0.7
SS18-217ENST00000580958 SOX13Q9UN79 622 aa10.66□□□□□ -0.7
SS18-217ENST00000580958 OR51B4Q9Y5P0 310 aa10.66□□□□□ -0.7
SS18-217ENST00000580958 IKBKGQ9Y6K9 419 aa10.66□□□□□ -0.7
SS18-217ENST00000580958 RPS6KL1Q9Y6S9 549 aa10.66□□□□□ -0.7
SS18-217ENST00000580958 FAM237BA0A1B0GVD1 139 aa10.65□□□□□ -0.7
SS18-217ENST00000580958 FAM155BO75949 473 aa10.65□□□□□ -0.7
SS18-217ENST00000580958 ALDH1A2O94788 518 aa10.65□□□□□ -0.7
SS18-217ENST00000580958 CYBBP04839 570 aa10.65□□□□□ -0.7
SS18-217ENST00000580958 POLBP06746 335 aa10.65□□□□□ -0.7
SS18-217ENST00000580958 KRT15P19012 456 aa10.65□□□□□ -0.7
SS18-217ENST00000580958 GNGT1P63211 74 aa10.65□□□□□ -0.7
SS18-217ENST00000580958 GUCY1A3Q02108 690 aa10.65□□□□□ -0.7
SS18-217ENST00000580958 LMAN2Q12907 356 aa10.65□□□□□ -0.7
SS18-217ENST00000580958 POU6F1Q14863 301 aa10.65□□□□□ -0.7
SS18-217ENST00000580958 SMAD1Q15797 465 aaKnown RBP10.65□□□□□ -0.7
SS18-217ENST00000580958 ANKRD20A4Q4UJ75 823 aa10.65□□□□□ -0.7
SS18-217ENST00000580958 RARS2Q5T160 578 aaKnown RBP10.65□□□□□ -0.7
SS18-217ENST00000580958 FYB2Q5VWT5 728 aa10.65□□□□□ -0.7
SS18-217ENST00000580958 RNF43Q68DV7 783 aa10.65□□□□□ -0.7
SS18-217ENST00000580958 ALG1LQ6GMV1 187 aa10.65□□□□□ -0.7
SS18-217ENST00000580958 LINGO4Q6UY18 593 aa10.65□□□□□ -0.7
SS18-217ENST00000580958 RANBP10Q6VN20 620 aa10.65□□□□□ -0.7
SS18-217ENST00000580958 MARK2Q7KZI7 788 aaKnown RBP10.65□□□□□ -0.7
SS18-217ENST00000580958 SLC26A11Q86WA9 606 aa10.65□□□□□ -0.7
SS18-217ENST00000580958 RASSF3Q86WH2 238 aa10.65□□□□□ -0.7
SS18-217ENST00000580958 RNF135Q8IUD6 432 aa10.65□□□□□ -0.7
SS18-217ENST00000580958 ARID3BQ8IVW6 561 aaPredicted RBP10.65□□□□□ -0.7
SS18-217ENST00000580958 CCDC117Q8IWD4 279 aaPredicted RBP10.65□□□□□ -0.7
SS18-217ENST00000580958 SRRM1Q8IYB3 904 aaKnown RBP10.65□□□□□ -0.7
SS18-217ENST00000580958 APCDD1Q8J025 514 aa10.65□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms