RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 PRPF39Q86UA1 669 aaKnown RBP8.26□□□□□ -1.09
VPS53-214ENST00000572607 NLRP14Q86W24 1093 aa8.26□□□□□ -1.09
VPS53-214ENST00000572607 FAM72BQ86X60 149 aa8.26□□□□□ -1.09
VPS53-214ENST00000572607 AADATQ8N5Z0 425 aa8.26□□□□□ -1.09
VPS53-214ENST00000572607 RTL3Q8N8U3 475 aaKnown RBP8.26□□□□□ -1.09
VPS53-214ENST00000572607 RNF214Q8ND24 703 aa8.26□□□□□ -1.09
VPS53-214ENST00000572607 TMIEQ8NEW7 156 aa8.26□□□□□ -1.09
VPS53-214ENST00000572607 FNIP1Q8TF40 1166 aa8.26□□□□□ -1.09
VPS53-214ENST00000572607 CASKIN2Q8WXE0 1202 aa8.26□□□□□ -1.09
VPS53-214ENST00000572607 ARHGEF2Q92974 986 aaKnown RBP8.26□□□□□ -1.09
VPS53-214ENST00000572607 ISCUQ9H1K1 167 aa8.26□□□□□ -1.09
VPS53-214ENST00000572607 TNKS2Q9H2K2 1166 aa8.26□□□□□ -1.09
VPS53-214ENST00000572607 KDM4CQ9H3R0 1056 aa8.26□□□□□ -1.09
VPS53-214ENST00000572607 DHX35Q9H5Z1 703 aaKnown RBP8.26□□□□□ -1.09
VPS53-214ENST00000572607 OSGEPQ9NPF4 335 aa8.26□□□□□ -1.09
VPS53-214ENST00000572607 FSCN3Q9NQT6 498 aa8.26□□□□□ -1.09
VPS53-214ENST00000572607 ZNF212Q9UDV6 495 aa8.26□□□□□ -1.09
VPS53-214ENST00000572607 SERGEFQ9UGK8 458 aa8.26□□□□□ -1.09
VPS53-214ENST00000572607 IL36AQ9UHA7 158 aa8.26□□□□□ -1.09
VPS53-214ENST00000572607 PCSK1NQ9UHG2 260 aa8.26□□□□□ -1.09
VPS53-214ENST00000572607 PPM1HQ9ULR3 514 aa8.26□□□□□ -1.09
VPS53-214ENST00000572607 PLXND1Q9Y4D7 1925 aa8.26□□□□□ -1.09
VPS53-214ENST00000572607 THADAQ6YHU6 1953 aa8.26□□□□□ -1.09
VPS53-214ENST00000572607 PCNX2A6NKB5 2137 aa8.26□□□□□ -1.09
VPS53-214ENST00000572607 CKAP5Q14008 2032 aa8.25□□□□□ -1.09
VPS53-214ENST00000572607 MYO18AQ92614 2054 aaKnown RBP8.25□□□□□ -1.09
VPS53-214ENST00000572607 A0A1B0GVT2 93 aa8.25□□□□□ -1.09
VPS53-214ENST00000572607 A0A1W2PPC4 97 aa8.25□□□□□ -1.09
VPS53-214ENST00000572607 H3BM21 787 aa8.25□□□□□ -1.09
VPS53-214ENST00000572607 GIPC1O14908 333 aa8.25□□□□□ -1.09
VPS53-214ENST00000572607 SMAD6O43541 496 aaKnown RBP8.25□□□□□ -1.09
VPS53-214ENST00000572607 PLRG1O43660 514 aaKnown RBP8.25□□□□□ -1.09
VPS53-214ENST00000572607 ZMPSTE24O75844 475 aa8.25□□□□□ -1.09
VPS53-214ENST00000572607 GYPCP04921 128 aa8.25□□□□□ -1.09
VPS53-214ENST00000572607 DRD3P35462 400 aa8.25□□□□□ -1.09
VPS53-214ENST00000572607 NUDT1P36639 197 aa8.25□□□□□ -1.09
VPS53-214ENST00000572607 ACVRL1P37023 503 aa8.25□□□□□ -1.09
VPS53-214ENST00000572607 SSR1P43307 286 aaKnown RBP8.25□□□□□ -1.09
VPS53-214ENST00000572607 GRIA4P48058 902 aa8.25□□□□□ -1.09
VPS53-214ENST00000572607 YBEYP58557 167 aaPredicted RBP8.25□□□□□ -1.09
VPS53-214ENST00000572607 SNRPD1P62314 119 aaKnown RBP8.25□□□□□ -1.09
VPS53-214ENST00000572607 RACK1P63244 317 aaKnown RBP8.25□□□□□ -1.09
VPS53-214ENST00000572607 OGDHQ02218 1023 aa8.25□□□□□ -1.09
VPS53-214ENST00000572607 RAD51Q06609 339 aa8.25□□□□□ -1.09
VPS53-214ENST00000572607 CNTN1Q12860 1018 aa8.25□□□□□ -1.09
VPS53-214ENST00000572607 SUZ12Q15022 739 aaKnown RBP8.25□□□□□ -1.09
VPS53-214ENST00000572607 ACAP1Q15027 740 aa8.25□□□□□ -1.09
VPS53-214ENST00000572607 PARP15Q460N3 678 aa8.25□□□□□ -1.09
VPS53-214ENST00000572607 CCDC122Q5T0U0 273 aa8.25□□□□□ -1.09
VPS53-214ENST00000572607 ERMARDQ5T6L9 678 aa8.25□□□□□ -1.09
VPS53-214ENST00000572607 HGSNATQ68CP4 663 aa8.25□□□□□ -1.09
VPS53-214ENST00000572607 DPY19L3Q6ZPD9 716 aa8.25□□□□□ -1.09
VPS53-214ENST00000572607 DNAAF5Q86Y56 855 aa8.25□□□□□ -1.09
VPS53-214ENST00000572607 PSTKQ8IV42 348 aaKnown RBP8.25□□□□□ -1.09
VPS53-214ENST00000572607 PYROXD2Q8N2H3 581 aa8.25□□□□□ -1.09
VPS53-214ENST00000572607 KDF1Q8NAX2 398 aaPredicted RBP8.25□□□□□ -1.09
VPS53-214ENST00000572607 OR2A12Q8NGT7 310 aa8.25□□□□□ -1.09
VPS53-214ENST00000572607 GRIN3AQ8TCU5 1115 aa8.25□□□□□ -1.09
VPS53-214ENST00000572607 LRIG1Q96JA1 1093 aa8.25□□□□□ -1.09
VPS53-214ENST00000572607 HEPHQ9BQS7 1158 aa8.25□□□□□ -1.09
VPS53-214ENST00000572607 ANP32EQ9BTT0 268 aa8.25□□□□□ -1.09
VPS53-214ENST00000572607 ACE2Q9BYF1 805 aaPredicted RBP8.25□□□□□ -1.09
VPS53-214ENST00000572607 ZWILCHQ9H900 591 aa8.25□□□□□ -1.09
VPS53-214ENST00000572607 PREBQ9HCU5 417 aa8.25□□□□□ -1.09
VPS53-214ENST00000572607 TM9SF3Q9HD45 589 aa8.25□□□□□ -1.09
VPS53-214ENST00000572607 AASDHPPTQ9NRN7 309 aa8.25□□□□□ -1.09
VPS53-214ENST00000572607 NDFIP2Q9NV92 336 aa8.25□□□□□ -1.09
VPS53-214ENST00000572607 DNAAF2Q9NVR5 837 aaKnown RBP8.25□□□□□ -1.09
VPS53-214ENST00000572607 IP6K2Q9UHH9 426 aa8.25□□□□□ -1.09
VPS53-214ENST00000572607 ZMIZ1Q9ULJ6 1067 aa8.25□□□□□ -1.09
VPS53-214ENST00000572607 PCDHB9Q9Y5E1 797 aa8.25□□□□□ -1.09
VPS53-214ENST00000572607 ANKRD11Q6UB99 2663 aaPredicted RBP8.24□□□□□ -1.09
VPS53-214ENST00000572607 ARHGAP42A6NI28 874 aa8.24□□□□□ -1.09
VPS53-214ENST00000572607 WASH4PA8MWX3 477 aa8.24□□□□□ -1.09
VPS53-214ENST00000572607 UPK3BL1B0FP48 263 aa8.24□□□□□ -1.09
VPS53-214ENST00000572607 RASA4BC9J798 803 aa8.24□□□□□ -1.09
VPS53-214ENST00000572607 UPK3BL2E5RIL1 263 aa8.24□□□□□ -1.09
VPS53-214ENST00000572607 H3BRJ5 948 aa8.24□□□□□ -1.09
VPS53-214ENST00000572607 RASA4O43374 803 aa8.24□□□□□ -1.09
VPS53-214ENST00000572607 KDELR3O43731 214 aa8.24□□□□□ -1.09
VPS53-214ENST00000572607 AKR1B10O60218 316 aa8.24□□□□□ -1.09
VPS53-214ENST00000572607 DFNA5O60443 496 aa8.24□□□□□ -1.09
VPS53-214ENST00000572607 MAGEC1O60732 1142 aa8.24□□□□□ -1.09
VPS53-214ENST00000572607 LEFTY1O75610 366 aa8.24□□□□□ -1.09
VPS53-214ENST00000572607 IGSF6O95976 241 aa8.24□□□□□ -1.09
VPS53-214ENST00000572607 GSRP00390 522 aa8.24□□□□□ -1.09
VPS53-214ENST00000572607 IGHV4-34P06331 123 aa8.24□□□□□ -1.09
VPS53-214ENST00000572607 CEACAM1P13688 526 aa8.24□□□□□ -1.09
VPS53-214ENST00000572607 LORP23490 312 aaPredicted RBP8.24□□□□□ -1.09
VPS53-214ENST00000572607 MIPP30301 263 aa8.24□□□□□ -1.09
VPS53-214ENST00000572607 PCK1P35558 622 aa8.24□□□□□ -1.09
VPS53-214ENST00000572607 ARL4AP40617 200 aa8.24□□□□□ -1.09
VPS53-214ENST00000572607 CSNK1EP49674 416 aaKnown RBP8.24□□□□□ -1.09
VPS53-214ENST00000572607 CCNHP51946 323 aaPredicted RBP8.24□□□□□ -1.09
VPS53-214ENST00000572607 NEK3P51956 506 aa8.24□□□□□ -1.09
VPS53-214ENST00000572607 RHOAP61586 193 aa8.24□□□□□ -1.09
VPS53-214ENST00000572607 ZNF252P-AS1Q0IIN9 211 aa8.24□□□□□ -1.09
VPS53-214ENST00000572607 PIGHQ14442 188 aaPredicted RBP8.24□□□□□ -1.09
VPS53-214ENST00000572607 KIF19Q2TAC6 998 aa8.24□□□□□ -1.09
VPS53-214ENST00000572607 INAVAQ3KP66 663 aa8.24□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms