RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 PKLRP30613 574 aa3.34□□□□□ -1.87
VPS35-208ENST00000568612 GUCY1A2P33402 732 aa3.34□□□□□ -1.87
VPS35-208ENST00000568612 NUDT1P36639 197 aa3.34□□□□□ -1.87
VPS35-208ENST00000568612 ATP5OP48047 213 aa3.34□□□□□ -1.87
VPS35-208ENST00000568612 PCYT1AP49585 367 aa3.34□□□□□ -1.87
VPS35-208ENST00000568612 VPS41P49754 854 aa3.34□□□□□ -1.87
VPS35-208ENST00000568612 EIF2B2P49770 351 aaKnown RBP3.34□□□□□ -1.87
VPS35-208ENST00000568612 RGS7P49802 495 aa3.34□□□□□ -1.87
VPS35-208ENST00000568612 BCAP31P51572 246 aa3.34□□□□□ -1.87
VPS35-208ENST00000568612 ALDH5A1P51649 535 aaPredicted RBP3.34□□□□□ -1.87
VPS35-208ENST00000568612 STAT2P52630 851 aa3.34□□□□□ -1.87
VPS35-208ENST00000568612 PEX3P56589 373 aa3.34□□□□□ -1.87
VPS35-208ENST00000568612 VBP1P61758 197 aa3.34□□□□□ -1.87
VPS35-208ENST00000568612 GUCY2DQ02846 1103 aa3.34□□□□□ -1.87
VPS35-208ENST00000568612 ENPEPQ07075 957 aa3.34□□□□□ -1.87
VPS35-208ENST00000568612 RALGDSQ12967 914 aa3.34□□□□□ -1.87
VPS35-208ENST00000568612 RESTQ13127 1097 aa3.34□□□□□ -1.87
VPS35-208ENST00000568612 LPIN1Q14693 890 aa3.34□□□□□ -1.87
VPS35-208ENST00000568612 UBXN2BQ14CS0 331 aa3.34□□□□□ -1.87
VPS35-208ENST00000568612 CNGA2Q16280 664 aa3.34□□□□□ -1.87
VPS35-208ENST00000568612 WSCD2Q2TBF2 565 aa3.34□□□□□ -1.87
VPS35-208ENST00000568612 INAVAQ3KP66 663 aa3.34□□□□□ -1.87
VPS35-208ENST00000568612 SUPT20HL1Q3ZLR7 823 aa3.34□□□□□ -1.87
VPS35-208ENST00000568612 SPDYE7PQ495Y7 208 aa3.34□□□□□ -1.87
VPS35-208ENST00000568612 GLE1Q53GS7 698 aaKnown RBP3.34□□□□□ -1.87
VPS35-208ENST00000568612 HSP90AA5PQ58FG0 334 aa3.34□□□□□ -1.87
VPS35-208ENST00000568612 TTMPQ5BVD1 217 aa3.34□□□□□ -1.87
VPS35-208ENST00000568612 KCNT1Q5JUK3 1230 aa3.34□□□□□ -1.87
VPS35-208ENST00000568612 FAM209BQ5JX69 171 aa3.34□□□□□ -1.87
VPS35-208ENST00000568612 ODR4Q5SWX8 454 aa3.34□□□□□ -1.87
VPS35-208ENST00000568612 LAIR1Q6GTX8 287 aa3.34□□□□□ -1.87
VPS35-208ENST00000568612 ARMCX5Q6P1M9 558 aa3.34□□□□□ -1.87
VPS35-208ENST00000568612 C1orf228Q6PIY5 440 aa3.34□□□□□ -1.87
VPS35-208ENST00000568612 B3GNT6Q6ZMB0 384 aa3.34□□□□□ -1.87
VPS35-208ENST00000568612 IDO2Q6ZQW0 420 aa3.34□□□□□ -1.87
VPS35-208ENST00000568612 RHOUQ7L0Q8 258 aa3.34□□□□□ -1.87
VPS35-208ENST00000568612 KCTD20Q7Z5Y7 419 aa3.34□□□□□ -1.87
VPS35-208ENST00000568612 ZER1Q7Z7L7 766 aa3.34□□□□□ -1.87
VPS35-208ENST00000568612 MRGPRGQ86SM5 289 aa3.34□□□□□ -1.87
VPS35-208ENST00000568612 CTAGE6Q86UF2 777 aa3.34□□□□□ -1.87
VPS35-208ENST00000568612 ZNF677Q86XU0 584 aa3.34□□□□□ -1.87
VPS35-208ENST00000568612 TICAM1Q8IUC6 712 aa3.34□□□□□ -1.87
VPS35-208ENST00000568612 VRK3Q8IV63 474 aa3.34□□□□□ -1.87
VPS35-208ENST00000568612 CTAGE4Q8IX94 777 aa3.34□□□□□ -1.87
VPS35-208ENST00000568612 IFT20Q8IY31 132 aa3.34□□□□□ -1.87
VPS35-208ENST00000568612 CMTR2Q8IYT2 770 aaKnown RBP3.34□□□□□ -1.87
VPS35-208ENST00000568612 TBC1D21Q8IYX1 336 aa3.34□□□□□ -1.87
VPS35-208ENST00000568612 LCORLQ8N3X6 602 aa3.34□□□□□ -1.87
VPS35-208ENST00000568612 CSGALNACT2Q8N6G5 542 aa3.34□□□□□ -1.87
VPS35-208ENST00000568612 ARFGAP2Q8N6H7 521 aa3.34□□□□□ -1.87
VPS35-208ENST00000568612 ENAHQ8N8S7 591 aaPredicted RBP3.34□□□□□ -1.87
VPS35-208ENST00000568612 PCSK9Q8NBP7 692 aaKnown RBP3.34□□□□□ -1.87
VPS35-208ENST00000568612 SUPT20HQ8NEM7 779 aa3.34□□□□□ -1.87
VPS35-208ENST00000568612 OR56A1Q8NGH5 318 aa3.34□□□□□ -1.87
VPS35-208ENST00000568612 OR6S1Q8NH40 331 aa3.34□□□□□ -1.87
VPS35-208ENST00000568612 PHOSPHO2Q8TCD6 241 aa3.34□□□□□ -1.87
VPS35-208ENST00000568612 AFG1LQ8WV93 481 aa3.34□□□□□ -1.87
VPS35-208ENST00000568612 CASKIN2Q8WXE0 1202 aa3.34□□□□□ -1.87
VPS35-208ENST00000568612 SSH1Q8WYL5 1049 aa3.34□□□□□ -1.87
VPS35-208ENST00000568612 HDAC10Q969S8 669 aa3.34□□□□□ -1.87
VPS35-208ENST00000568612 LENG9Q96B70 501 aa3.34□□□□□ -1.87
VPS35-208ENST00000568612 REXO5Q96IC2 774 aaKnown RBP3.34□□□□□ -1.87
VPS35-208ENST00000568612 TEKT5Q96M29 485 aa3.34□□□□□ -1.87
VPS35-208ENST00000568612 TBATAQ96M53 351 aa3.34□□□□□ -1.87
VPS35-208ENST00000568612 PIP5K1AQ99755 562 aa3.34□□□□□ -1.87
VPS35-208ENST00000568612 SDF4Q9BRK5 362 aa3.34□□□□□ -1.87
VPS35-208ENST00000568612 ZPBPQ9BS86 351 aa3.34□□□□□ -1.87
VPS35-208ENST00000568612 SELENOOQ9BVL4 669 aa3.34□□□□□ -1.87
VPS35-208ENST00000568612 NUSAP1Q9BXS6 441 aaKnown RBP3.34□□□□□ -1.87
VPS35-208ENST00000568612 WNT5BQ9H1J7 359 aa3.34□□□□□ -1.87
VPS35-208ENST00000568612 KCNN2Q9H2S1 579 aa3.34□□□□□ -1.87
VPS35-208ENST00000568612 IKZF4Q9H2S9 585 aa3.34□□□□□ -1.87
VPS35-208ENST00000568612 SP140LQ9H930 580 aa3.34□□□□□ -1.87
VPS35-208ENST00000568612 PALMDQ9NP74 551 aa3.34□□□□□ -1.87
VPS35-208ENST00000568612 HPS4Q9NQG7 708 aa3.34□□□□□ -1.87
VPS35-208ENST00000568612 HOMER2Q9NSB8 354 aa3.34□□□□□ -1.87
VPS35-208ENST00000568612 PANK4Q9NVE7 773 aa3.34□□□□□ -1.87
VPS35-208ENST00000568612 FBXO34Q9NWN3 711 aa3.34□□□□□ -1.87
VPS35-208ENST00000568612 MRPL39Q9NYK5 338 aaKnown RBP3.34□□□□□ -1.87
VPS35-208ENST00000568612 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP3.34□□□□□ -1.87
VPS35-208ENST00000568612 ADAM22Q9P0K1 906 aa3.34□□□□□ -1.87
VPS35-208ENST00000568612 RNF181Q9P0P0 153 aa3.34□□□□□ -1.87
VPS35-208ENST00000568612 SENP1Q9P0U3 644 aa3.34□□□□□ -1.87
VPS35-208ENST00000568612 ATP6V1HQ9UI12 483 aa3.34□□□□□ -1.87
VPS35-208ENST00000568612 TEKT2Q9UIF3 430 aa3.34□□□□□ -1.87
VPS35-208ENST00000568612 TUBD1Q9UJT1 453 aa3.34□□□□□ -1.87
VPS35-208ENST00000568612 STX8Q9UNK0 236 aa3.34□□□□□ -1.87
VPS35-208ENST00000568612 RPL26L1Q9UNX3 145 aaKnown RBP3.34□□□□□ -1.87
VPS35-208ENST00000568612 AP3M1Q9Y2T2 418 aa3.34□□□□□ -1.87
VPS35-208ENST00000568612 CHST2Q9Y4C5 530 aa3.34□□□□□ -1.87
VPS35-208ENST00000568612 PCDHGA8Q9Y5G5 932 aa3.34□□□□□ -1.87
VPS35-208ENST00000568612 CACNG2Q9Y698 323 aa3.34□□□□□ -1.87
VPS35-208ENST00000568612 FPGT-TNNI3KV9GXZ4 949 aa3.34□□□□□ -1.87
VPS35-208ENST00000568612 PNPLA7Q6ZV29 1317 aa3.34□□□□□ -1.87
VPS35-208ENST00000568612 ATRNL1Q5VV63 1379 aa3.34□□□□□ -1.88
VPS35-208ENST00000568612 KIAA0232Q92628 1395 aa3.34□□□□□ -1.88
VPS35-208ENST00000568612 PIK3C2GO75747 1445 aa3.34□□□□□ -1.88
VPS35-208ENST00000568612 ADGRB3O60242 1522 aa3.34□□□□□ -1.88
VPS35-208ENST00000568612 ABCC6O95255 1503 aa3.34□□□□□ -1.88
VPS35-208ENST00000568612 MYOM1P52179 1685 aa3.33□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 67.2 ms