RNA–Protein interactions for RNA: ENST00000567805.5

CLK3-219, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 327 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-219ENST00000567805 A0A1W2PQJ5 194 aa4.87□□□□□ -1.63
CLK3-219ENST00000567805 A0A1W2PQU0 124 aa4.87□□□□□ -1.63
CLK3-219ENST00000567805 SYCE3A1L190 88 aa4.87□□□□□ -1.63
CLK3-219ENST00000567805 WASH4PA8MWX3 477 aa4.87□□□□□ -1.63
CLK3-219ENST00000567805 TMCO5BA8MYB1 307 aa4.87□□□□□ -1.63
CLK3-219ENST00000567805 C1QTNF9BB2RNN3 333 aa4.87□□□□□ -1.63
CLK3-219ENST00000567805 EIF3CLB5ME19 914 aaKnown RBP4.87□□□□□ -1.63
CLK3-219ENST00000567805 KCNK3O14649 394 aa4.87□□□□□ -1.63
CLK3-219ENST00000567805 WNT9AO14904 365 aa4.87□□□□□ -1.63
CLK3-219ENST00000567805 FGF10O15520 208 aaPredicted RBP4.87□□□□□ -1.63
CLK3-219ENST00000567805 TNFSF14O43557 240 aa4.87□□□□□ -1.63
CLK3-219ENST00000567805 KDELR3O43731 214 aa4.87□□□□□ -1.63
CLK3-219ENST00000567805 AP1G1O43747 822 aa4.87□□□□□ -1.63
CLK3-219ENST00000567805 CREB3O43889 395 aa4.87□□□□□ -1.63
CLK3-219ENST00000567805 DKK1O94907 266 aa4.87□□□□□ -1.63
CLK3-219ENST00000567805 CD160O95971 181 aa4.87□□□□□ -1.63
CLK3-219ENST00000567805 TOP3BO95985 862 aaKnown RBP4.87□□□□□ -1.63
CLK3-219ENST00000567805 GSRP00390 522 aa4.87□□□□□ -1.63
CLK3-219ENST00000567805 FTLP02792 175 aaPredicted RBP4.87□□□□□ -1.63
CLK3-219ENST00000567805 ITGAVP06756 1048 aa4.87□□□□□ -1.63
CLK3-219ENST00000567805 C1QTNF9P0C862 333 aa4.87□□□□□ -1.63
CLK3-219ENST00000567805 MYBL1P10243 752 aa4.87□□□□□ -1.63
CLK3-219ENST00000567805 ADRB3P13945 408 aa4.87□□□□□ -1.63
CLK3-219ENST00000567805 SPINK2P20155 84 aa4.87□□□□□ -1.63
CLK3-219ENST00000567805 PTMSP20962 102 aa4.87□□□□□ -1.63
CLK3-219ENST00000567805 HNRNPA2B1P22626 353 aaKnown RBP4.87□□□□□ -1.63
CLK3-219ENST00000567805 EPHB2P29323 1055 aa4.87□□□□□ -1.63
CLK3-219ENST00000567805 RXRGP48443 463 aa4.87□□□□□ -1.63
CLK3-219ENST00000567805 ARRB1P49407 418 aaPredicted RBP4.87□□□□□ -1.63
CLK3-219ENST00000567805 DNA2P51530 1060 aa4.87□□□□□ -1.63
CLK3-219ENST00000567805 CCNHP51946 323 aaPredicted RBP4.87□□□□□ -1.63
CLK3-219ENST00000567805 NEK3P51956 506 aa4.87□□□□□ -1.63
CLK3-219ENST00000567805 NXPH1P58417 271 aa4.87□□□□□ -1.63
CLK3-219ENST00000567805 YBEYP58557 167 aaPredicted RBP4.87□□□□□ -1.63
CLK3-219ENST00000567805 SNRPD1P62314 119 aaKnown RBP4.87□□□□□ -1.63
CLK3-219ENST00000567805 IL9RQ01113 521 aa4.87□□□□□ -1.63
CLK3-219ENST00000567805 KLHL30Q0D2K2 578 aa4.87□□□□□ -1.63
CLK3-219ENST00000567805 MAMLD1Q13495 774 aa4.87□□□□□ -1.63
CLK3-219ENST00000567805 NR1I3Q14994 352 aa4.87□□□□□ -1.63
CLK3-219ENST00000567805 PROX2Q3B8N5 592 aa4.87□□□□□ -1.63
CLK3-219ENST00000567805 PARP15Q460N3 678 aa4.87□□□□□ -1.63
CLK3-219ENST00000567805 CARD16Q5EG05 197 aa4.87□□□□□ -1.63
CLK3-219ENST00000567805 PLEKHA7Q6IQ23 1121 aa4.87□□□□□ -1.63
CLK3-219ENST00000567805 KIAA1161Q6NSJ0 714 aa4.87□□□□□ -1.63
CLK3-219ENST00000567805 FBXL19Q6PCT2 694 aa4.87□□□□□ -1.63
CLK3-219ENST00000567805 ZNF571Q7Z3V5 609 aaPredicted RBP4.87□□□□□ -1.63
CLK3-219ENST00000567805 TMC6Q7Z403 805 aa4.87□□□□□ -1.63
CLK3-219ENST00000567805 SLCO6A1Q86UG4 719 aa4.87□□□□□ -1.63
CLK3-219ENST00000567805 ZSCAN30Q86W11 494 aa4.87□□□□□ -1.63
CLK3-219ENST00000567805 HORMAD1Q86X24 394 aa4.87□□□□□ -1.63
CLK3-219ENST00000567805 ZNF354CQ86Y25 554 aa4.87□□□□□ -1.63
CLK3-219ENST00000567805 PYROXD2Q8N2H3 581 aa4.87□□□□□ -1.63
CLK3-219ENST00000567805 CHCHD4Q8N4Q1 142 aa4.87□□□□□ -1.63
CLK3-219ENST00000567805 RTL3Q8N8U3 475 aaKnown RBP4.87□□□□□ -1.63
CLK3-219ENST00000567805 KDF1Q8NAX2 398 aaPredicted RBP4.87□□□□□ -1.63
CLK3-219ENST00000567805 TMEM145Q8NBT3 493 aa4.87□□□□□ -1.63
CLK3-219ENST00000567805 CHST14Q8NCH0 376 aa4.87□□□□□ -1.63
CLK3-219ENST00000567805 OR2AP1Q8NGE2 309 aa4.87□□□□□ -1.63
CLK3-219ENST00000567805 FAM174AQ8TBP5 190 aa4.87□□□□□ -1.63
CLK3-219ENST00000567805 SAP25Q8TEE9 199 aa4.87□□□□□ -1.63
CLK3-219ENST00000567805 FNIP1Q8TF40 1166 aa4.87□□□□□ -1.63
CLK3-219ENST00000567805 CASKIN2Q8WXE0 1202 aa4.87□□□□□ -1.63
CLK3-219ENST00000567805 RAB7BQ96AH8 199 aa4.87□□□□□ -1.63
CLK3-219ENST00000567805 ARRDC3Q96B67 414 aa4.87□□□□□ -1.63
CLK3-219ENST00000567805 TRIM11Q96F44 468 aa4.87□□□□□ -1.63
CLK3-219ENST00000567805 NAP1L5Q96NT1 182 aaPredicted RBP4.87□□□□□ -1.63
CLK3-219ENST00000567805 EIF3CQ99613 913 aaKnown RBP4.87□□□□□ -1.63
CLK3-219ENST00000567805 NCAPGQ9BPX3 1015 aa4.87□□□□□ -1.63
CLK3-219ENST00000567805 OSBPL1AQ9BXW6 950 aa4.87□□□□□ -1.63
CLK3-219ENST00000567805 MAGEB5Q9BZ81 275 aa4.87□□□□□ -1.63
CLK3-219ENST00000567805 TM6SF2Q9BZW4 377 aa4.87□□□□□ -1.63
CLK3-219ENST00000567805 TTYH3Q9C0H2 523 aa4.87□□□□□ -1.63
CLK3-219ENST00000567805 HAUS4Q9H6D7 363 aa4.87□□□□□ -1.63
CLK3-219ENST00000567805 NOL6Q9H6R4 1146 aaKnown RBP4.87□□□□□ -1.63
CLK3-219ENST00000567805 ZDHHC6Q9H6R6 413 aa4.87□□□□□ -1.63
CLK3-219ENST00000567805 TOR4AQ9NXH8 423 aa4.87□□□□□ -1.63
CLK3-219ENST00000567805 TAS2R14Q9NYV8 317 aa4.87□□□□□ -1.63
CLK3-219ENST00000567805 HECAQ9UBI9 543 aaPredicted RBP4.87□□□□□ -1.63
CLK3-219ENST00000567805 FTSJ1Q9UET6 329 aa4.87□□□□□ -1.63
CLK3-219ENST00000567805 KLK13Q9UKR3 277 aa4.87□□□□□ -1.63
CLK3-219ENST00000567805 FZD10Q9ULW2 581 aa4.87□□□□□ -1.63
CLK3-219ENST00000567805 BTBD3Q9Y2F9 522 aa4.87□□□□□ -1.63
CLK3-219ENST00000567805 FCF1Q9Y324 198 aaKnown RBP4.87□□□□□ -1.63
CLK3-219ENST00000567805 BZW2Q9Y6E2 419 aaKnown RBP4.87□□□□□ -1.63
CLK3-219ENST00000567805 SCINQ9Y6U3 715 aa4.87□□□□□ -1.63
CLK3-219ENST00000567805 WASF2Q9Y6W5 498 aa4.87□□□□□ -1.63
CLK3-219ENST00000567805 MAP1BP46821 2468 aaKnown RBP4.87□□□□□ -1.63
CLK3-219ENST00000567805 LOC400499M0QZD8 3231 aa4.87□□□□□ -1.63
CLK3-219ENST00000567805 CEP295Q9C0D2 2601 aa4.86□□□□□ -1.63
CLK3-219ENST00000567805 USP24Q9UPU5 2620 aa4.86□□□□□ -1.63
CLK3-219ENST00000567805 LRP4O75096 1905 aa4.86□□□□□ -1.63
CLK3-219ENST00000567805 TMEM191CA6NGB0 347 aa4.86□□□□□ -1.63
CLK3-219ENST00000567805 RASA4BC9J798 803 aa4.86□□□□□ -1.63
CLK3-219ENST00000567805 GOLGA6L19H0YKK7 550 aa4.86□□□□□ -1.63
CLK3-219ENST00000567805 RNF103O00237 685 aa4.86□□□□□ -1.63
CLK3-219ENST00000567805 KRIT1O00522 736 aa4.86□□□□□ -1.63
CLK3-219ENST00000567805 DDX3XO00571 662 aaKnown RBP eCLIP4.86□□□□□ -1.63
CLK3-219ENST00000567805 SLC31A1O15431 190 aa4.86□□□□□ -1.63
CLK3-219ENST00000567805 RASA4O43374 803 aa4.86□□□□□ -1.63
CLK3-219ENST00000567805 TSPAN6O43657 245 aa4.86□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms