RNA–Protein interactions for RNA: ENST00000565995.5

RNF40-208, Transcript of ring finger protein 40, human

TSL 4

Gene RNF40, Length 586 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RNF40-208	ENST00000565995		A0A0D9SEW6	157 aa		13	□□□□□ -0.33
RNF40-208	ENST00000565995	PMS2P1	A4D2B8	440 aa		13	□□□□□ -0.33
RNF40-208	ENST00000565995	PYCARD-AS1	I3L0S3	204 aa		13	□□□□□ -0.33
RNF40-208	ENST00000565995	TSPAN6	O43657	245 aa		13	□□□□□ -0.33
RNF40-208	ENST00000565995	GCAT	O75600	419 aa		13	□□□□□ -0.33
RNF40-208	ENST00000565995	MBD3	O95983	291 aa		13	□□□□□ -0.33
RNF40-208	ENST00000565995	RHOC	P08134	193 aa		13	□□□□□ -0.33
RNF40-208	ENST00000565995	ITGB6	P18564	788 aa		13	□□□□□ -0.33
RNF40-208	ENST00000565995	GNA15	P30679	374 aa		13	□□□□□ -0.33
RNF40-208	ENST00000565995	PPP1R2	P41236	205 aa		13	□□□□□ -0.33
RNF40-208	ENST00000565995	YPEL5	P62699	121 aa		13	□□□□□ -0.33
RNF40-208	ENST00000565995	EIF3I	Q13347	325 aa	Known RBP	13	□□□□□ -0.33
RNF40-208	ENST00000565995	PDE1C	Q14123	709 aa	Predicted RBP	13	□□□□□ -0.33
RNF40-208	ENST00000565995	DEFB133	Q30KQ1	61 aa		13	□□□□□ -0.33
RNF40-208	ENST00000565995	BRMS1L	Q5PSV4	323 aa		13	□□□□□ -0.33
RNF40-208	ENST00000565995	C6orf132	Q5T0Z8	1188 aa		13	□□□□□ -0.33
RNF40-208	ENST00000565995	OTUD1	Q5VV17	481 aa	Predicted RBP	13	□□□□□ -0.33
RNF40-208	ENST00000565995	OLFML1	Q6UWY5	402 aa		13	□□□□□ -0.33
RNF40-208	ENST00000565995	SLC26A9	Q7LBE3	791 aa		13	□□□□□ -0.33
RNF40-208	ENST00000565995	SLC35F3	Q8IY50	421 aa		13	□□□□□ -0.33
RNF40-208	ENST00000565995	PCDH20	Q8N6Y1	951 aa	Known RBP	13	□□□□□ -0.33
RNF40-208	ENST00000565995	RAB7B	Q96AH8	199 aa		13	□□□□□ -0.33
RNF40-208	ENST00000565995	VOPP1	Q96AW1	172 aa		13	□□□□□ -0.33
RNF40-208	ENST00000565995	PPP1R13B	Q96KQ4	1090 aa		13	□□□□□ -0.33
RNF40-208	ENST00000565995	FAM81B	Q96LP2	452 aa		13	□□□□□ -0.33
RNF40-208	ENST00000565995	NPY6R	Q99463	290 aa		13	□□□□□ -0.33
RNF40-208	ENST00000565995	HEPH	Q9BQS7	1158 aa		13	□□□□□ -0.33
RNF40-208	ENST00000565995	ANLN	Q9NQW6	1124 aa		13	□□□□□ -0.33
RNF40-208	ENST00000565995	SYNJ2BP-COX16	A0A087WUM0	186 aa		12.99	□□□□□ -0.33
RNF40-208	ENST00000565995	ILVBL	A1L0T0	632 aa		12.99	□□□□□ -0.33
RNF40-208	ENST00000565995	TMX2-CTNND1	H3BSU7	103 aa		12.99	□□□□□ -0.33
RNF40-208	ENST00000565995		M0QYT0	321 aa		12.99	□□□□□ -0.33
RNF40-208	ENST00000565995	TOR1B	O14657	336 aa		12.99	□□□□□ -0.33
RNF40-208	ENST00000565995	PSMA7	O14818	248 aa		12.99	□□□□□ -0.33
RNF40-208	ENST00000565995	THAP12	O43422	761 aa		12.99	□□□□□ -0.33
RNF40-208	ENST00000565995	DAB1	O75553	588 aa		12.99	□□□□□ -0.33
RNF40-208	ENST00000565995	SMC2	O95347	1197 aa		12.99	□□□□□ -0.33
RNF40-208	ENST00000565995	ADCY5	O95622	1261 aa		12.99	□□□□□ -0.33
RNF40-208	ENST00000565995	KRT5	P13647	590 aa		12.99	□□□□□ -0.33
RNF40-208	ENST00000565995	CD44	P16070	742 aa	Known RBP	12.99	□□□□□ -0.33
RNF40-208	ENST00000565995	RECQL	P46063	649 aa	Predicted RBP	12.99	□□□□□ -0.33
RNF40-208	ENST00000565995	INHBC	P55103	352 aa		12.99	□□□□□ -0.33
RNF40-208	ENST00000565995	SLC6A3	Q01959	620 aa		12.99	□□□□□ -0.33
RNF40-208	ENST00000565995	NME3	Q13232	169 aa		12.99	□□□□□ -0.33
RNF40-208	ENST00000565995	SGCG	Q13326	291 aa		12.99	□□□□□ -0.33
RNF40-208	ENST00000565995	MAPK8IP2	Q13387	824 aa	Predicted RBP	12.99	□□□□□ -0.33
RNF40-208	ENST00000565995	PTK2B	Q14289	1009 aa		12.99	□□□□□ -0.33
RNF40-208	ENST00000565995	CCDC40	Q4G0X9	1142 aa		12.99	□□□□□ -0.33
RNF40-208	ENST00000565995	CARD16	Q5EG05	197 aa		12.99	□□□□□ -0.33
RNF40-208	ENST00000565995	RETSAT	Q6NUM9	610 aa		12.99	□□□□□ -0.33
RNF40-208	ENST00000565995	TTI2	Q6NXR4	508 aa		12.99	□□□□□ -0.33
RNF40-208	ENST00000565995	C11orf57	Q6ZUT1	292 aa	Predicted RBP	12.99	□□□□□ -0.33
RNF40-208	ENST00000565995	LMX1A	Q8TE12	382 aa		12.99	□□□□□ -0.33
RNF40-208	ENST00000565995	ISG20	Q96AZ6	181 aa	Known RBP	12.99	□□□□□ -0.33
RNF40-208	ENST00000565995	FAM117A	Q9C073	453 aa		12.99	□□□□□ -0.33
RNF40-208	ENST00000565995	INTS2	Q9H0H0	1204 aa	Known RBP	12.99	□□□□□ -0.33
RNF40-208	ENST00000565995	SIK2	Q9H0K1	926 aa		12.99	□□□□□ -0.33
RNF40-208	ENST00000565995	TNKS2	Q9H2K2	1166 aa		12.99	□□□□□ -0.33
RNF40-208	ENST00000565995	WDCP	Q9H6R7	721 aa		12.99	□□□□□ -0.33
RNF40-208	ENST00000565995	UBE2T	Q9NPD8	197 aa	Predicted RBP	12.99	□□□□□ -0.33
RNF40-208	ENST00000565995	ACP6	Q9NPH0	428 aa		12.99	□□□□□ -0.33
RNF40-208	ENST00000565995	PIGV	Q9NUD9	493 aa		12.99	□□□□□ -0.33
RNF40-208	ENST00000565995	COX16	Q9P0S2	106 aa		12.99	□□□□□ -0.33
RNF40-208	ENST00000565995	IPO11	Q9UI26	975 aa	Known RBP	12.99	□□□□□ -0.33
RNF40-208	ENST00000565995	PNMA8B	Q9ULN7	279 aa	Predicted RBP	12.99	□□□□□ -0.33
RNF40-208	ENST00000565995	TEX15	Q9BXT5	2789 aa		12.99	□□□□□ -0.33
RNF40-208	ENST00000565995	RELN	P78509	3460 aa		12.99	□□□□□ -0.33
RNF40-208	ENST00000565995	UTP20	O75691	2785 aa	Known RBP	12.98	□□□□□ -0.33
RNF40-208	ENST00000565995	IGLON5	A6NGN9	336 aa		12.98	□□□□□ -0.33
RNF40-208	ENST00000565995	BECN2	A8MW95	431 aa		12.98	□□□□□ -0.33
RNF40-208	ENST00000565995	PLD2	O14939	933 aa		12.98	□□□□□ -0.33
RNF40-208	ENST00000565995	CASC3	O15234	703 aa	Known RBP	12.98	□□□□□ -0.33
RNF40-208	ENST00000565995	YY2	O15391	372 aa		12.98	□□□□□ -0.33
RNF40-208	ENST00000565995	SUV39H1	O43463	412 aa		12.98	□□□□□ -0.33
RNF40-208	ENST00000565995	GRAP2	O75791	330 aa		12.98	□□□□□ -0.33
RNF40-208	ENST00000565995	GJB6	O95452	261 aa		12.98	□□□□□ -0.33
RNF40-208	ENST00000565995	GNA14	O95837	355 aa		12.98	□□□□□ -0.33
RNF40-208	ENST00000565995	CD160	O95971	181 aa		12.98	□□□□□ -0.33
RNF40-208	ENST00000565995	F9	P00740	461 aa		12.98	□□□□□ -0.33
RNF40-208	ENST00000565995	AFP	P02771	609 aa	Known RBP	12.98	□□□□□ -0.33
RNF40-208	ENST00000565995	SFTPC	P11686	197 aa		12.98	□□□□□ -0.33
RNF40-208	ENST00000565995	SLC5A2	P31639	672 aa		12.98	□□□□□ -0.33
RNF40-208	ENST00000565995	GGCX	P38435	758 aa		12.98	□□□□□ -0.33
RNF40-208	ENST00000565995	SERPINH1	P50454	418 aa	Known RBP	12.98	□□□□□ -0.33
RNF40-208	ENST00000565995	ADK	P55263	362 aa	Known RBP	12.98	□□□□□ -0.33
RNF40-208	ENST00000565995	STIM1	Q13586	685 aa		12.98	□□□□□ -0.33
RNF40-208	ENST00000565995	SPIDR	Q14159	915 aa		12.98	□□□□□ -0.33
RNF40-208	ENST00000565995	LVRN	Q6Q4G3	990 aa		12.98	□□□□□ -0.33
RNF40-208	ENST00000565995	LINGO4	Q6UY18	593 aa		12.98	□□□□□ -0.33
RNF40-208	ENST00000565995	FAM183BP	Q6ZVS7	135 aa		12.98	□□□□□ -0.33
RNF40-208	ENST00000565995	PARS2	Q7L3T8	475 aa	Known RBP	12.98	□□□□□ -0.33
RNF40-208	ENST00000565995	ZDHHC17	Q8IUH5	632 aa		12.98	□□□□□ -0.33
RNF40-208	ENST00000565995	ELOA2	Q8IYF1	753 aa	Predicted RBP	12.98	□□□□□ -0.33
RNF40-208	ENST00000565995	SDR16C5	Q8N3Y7	309 aa		12.98	□□□□□ -0.33
RNF40-208	ENST00000565995	GRIN3A	Q8TCU5	1115 aa		12.98	□□□□□ -0.33
RNF40-208	ENST00000565995	SMARCE1	Q969G3	411 aa		12.98	□□□□□ -0.33
RNF40-208	ENST00000565995	SGF29	Q96ES7	293 aa		12.98	□□□□□ -0.33
RNF40-208	ENST00000565995	TIGD1	Q96MW7	591 aa		12.98	□□□□□ -0.33
RNF40-208	ENST00000565995	CCDC3	Q9BQI4	270 aa		12.98	□□□□□ -0.33
RNF40-208	ENST00000565995	CLPB	Q9H078	707 aa		12.98	□□□□□ -0.33

Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms