RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 NEK3P51956 506 aa15.12■□□□□ 0.01
CLN3-213ENST00000565047 YBEYP58557 167 aaPredicted RBP15.12■□□□□ 0.01
CLN3-213ENST00000565047 FANCCQ00597 558 aa15.12■□□□□ 0.01
CLN3-213ENST00000565047 CCDC15Q0P6D6 951 aa15.12■□□□□ 0.01
CLN3-213ENST00000565047 SERINC3Q13530 473 aa15.12■□□□□ 0.01
CLN3-213ENST00000565047 STAT4Q14765 748 aa15.12■□□□□ 0.01
CLN3-213ENST00000565047 MYLK3Q32MK0 819 aa15.12■□□□□ 0.01
CLN3-213ENST00000565047 INO80DQ53TQ3 878 aaPredicted RBP15.12■□□□□ 0.01
CLN3-213ENST00000565047 AFMIDQ63HM1 303 aa15.12■□□□□ 0.01
CLN3-213ENST00000565047 DCUN1D2Q6PH85 259 aa15.12■□□□□ 0.01
CLN3-213ENST00000565047 GCNT7Q6ZNI0 430 aa15.12■□□□□ 0.01
CLN3-213ENST00000565047 TMPRSS7Q7RTY8 843 aa15.12■□□□□ 0.01
CLN3-213ENST00000565047 OR6K2Q8NGY2 324 aa15.12■□□□□ 0.01
CLN3-213ENST00000565047 TSC1Q92574 1164 aa15.12■□□□□ 0.01
CLN3-213ENST00000565047 KLK6Q92876 244 aa15.12■□□□□ 0.01
CLN3-213ENST00000565047 HMCESQ96FZ2 354 aa15.12■□□□□ 0.01
CLN3-213ENST00000565047 BMFQ96LC9 184 aa15.12■□□□□ 0.01
CLN3-213ENST00000565047 KLF6Q99612 283 aaPredicted RBP15.12■□□□□ 0.01
CLN3-213ENST00000565047 TM6SF2Q9BZW4 377 aa15.12■□□□□ 0.01
CLN3-213ENST00000565047 CAAP1Q9H8G2 361 aa15.12■□□□□ 0.01
CLN3-213ENST00000565047 PDFQ9HBH1 243 aa15.12■□□□□ 0.01
CLN3-213ENST00000565047 ZMIZ1Q9ULJ6 1067 aa15.12■□□□□ 0.01
CLN3-213ENST00000565047 MFHAS1Q9Y4C4 1052 aa15.12■□□□□ 0.01
CLN3-213ENST00000565047 CELSR3Q9NYQ7 3312 aa15.12■□□□□ 0.01
CLN3-213ENST00000565047 PTPRBP23467 1997 aa15.11■□□□□ 0.01
CLN3-213ENST00000565047 A0A1W2PQJ5 194 aa15.11■□□□□ 0.01
CLN3-213ENST00000565047 ANKRD62A6NC57 917 aa15.11■□□□□ 0.01
CLN3-213ENST00000565047 ZSCAN5CA6NGD5 496 aaPredicted RBP15.11■□□□□ 0.01
CLN3-213ENST00000565047 C16orf96A6NNT2 1141 aa15.11■□□□□ 0.01
CLN3-213ENST00000565047 RASA4BC9J798 803 aa15.11■□□□□ 0.01
CLN3-213ENST00000565047 YKT6O15498 198 aa15.11■□□□□ 0.01
CLN3-213ENST00000565047 RASA4O43374 803 aa15.11■□□□□ 0.01
CLN3-213ENST00000565047 CREB3O43889 395 aa15.11■□□□□ 0.01
CLN3-213ENST00000565047 HTR7P34969 479 aa15.11■□□□□ 0.01
CLN3-213ENST00000565047 ABL2P42684 1182 aa15.11■□□□□ 0.01
CLN3-213ENST00000565047 GEMIN4P57678 1058 aaKnown RBP15.11■□□□□ 0.01
CLN3-213ENST00000565047 KLHL30Q0D2K2 578 aa15.11■□□□□ 0.01
CLN3-213ENST00000565047 CYTH1Q15438 398 aa15.11■□□□□ 0.01
CLN3-213ENST00000565047 PARP15Q460N3 678 aa15.11■□□□□ 0.01
CLN3-213ENST00000565047 SLC45A4Q5BKX6 768 aa15.11■□□□□ 0.01
CLN3-213ENST00000565047 ZNF805Q5CZA5 627 aa15.11■□□□□ 0.01
CLN3-213ENST00000565047 ABI3BPQ7Z7G0 1075 aa15.11■□□□□ 0.01
CLN3-213ENST00000565047 SLC22A18ASQ8N1D0 253 aa15.11■□□□□ 0.01
CLN3-213ENST00000565047 CASKIN2Q8WXE0 1202 aa15.11■□□□□ 0.01
CLN3-213ENST00000565047 SYN2Q92777 582 aaPredicted RBP15.11■□□□□ 0.01
CLN3-213ENST00000565047 PPP1R16AQ96I34 528 aa15.11■□□□□ 0.01
CLN3-213ENST00000565047 EPAS1Q99814 870 aa15.11■□□□□ 0.01
CLN3-213ENST00000565047 C1QTNF2Q9BXJ5 285 aa15.11■□□□□ 0.01
CLN3-213ENST00000565047 FZD3Q9NPG1 666 aa15.11■□□□□ 0.01
CLN3-213ENST00000565047 DYRK4Q9NR20 520 aa15.11■□□□□ 0.01
CLN3-213ENST00000565047 GPATCH2LQ9NWQ4 482 aa15.11■□□□□ 0.01
CLN3-213ENST00000565047 LHX3Q9UBR4 397 aa15.11■□□□□ 0.01
CLN3-213ENST00000565047 IGF2RP11717 2491 aa15.11■□□□□ 0.01
CLN3-213ENST00000565047 TMEM8BA6NDV4 472 aa15.1■□□□□ 0.01
CLN3-213ENST00000565047 TAF4O00268 1085 aa15.1■□□□□ 0.01
CLN3-213ENST00000565047 AREL1O15033 823 aa15.1■□□□□ 0.01
CLN3-213ENST00000565047 RAD51BO15315 384 aa15.1■□□□□ 0.01
CLN3-213ENST00000565047 FGF10O15520 208 aaPredicted RBP15.1■□□□□ 0.01
CLN3-213ENST00000565047 BUB1O43683 1085 aa15.1■□□□□ 0.01
CLN3-213ENST00000565047 LRCH4O75427 683 aa15.1■□□□□ 0.01
CLN3-213ENST00000565047 TMCC1O94876 653 aa15.1■□□□□ 0.01
CLN3-213ENST00000565047 POP4O95707 220 aaKnown RBP15.1■□□□□ 0.01
CLN3-213ENST00000565047 SERPINC1P01008 464 aa15.1■□□□□ 0.01
CLN3-213ENST00000565047 GIMD1P0DJR0 217 aa15.1■□□□□ 0.01
CLN3-213ENST00000565047 HNRNPA2B1P22626 353 aaKnown RBP15.1■□□□□ 0.01
CLN3-213ENST00000565047 PSMA2P25787 234 aa15.1■□□□□ 0.01
CLN3-213ENST00000565047 DNA2P51530 1060 aa15.1■□□□□ 0.01
CLN3-213ENST00000565047 SMAD1Q15797 465 aaKnown RBP15.1■□□□□ 0.01
CLN3-213ENST00000565047 ATXN7L2Q5T6C5 722 aaPredicted RBP15.1■□□□□ 0.01
CLN3-213ENST00000565047 ERMARDQ5T6L9 678 aa15.1■□□□□ 0.01
CLN3-213ENST00000565047 ARHGAP12Q8IWW6 846 aa15.1■□□□□ 0.01
CLN3-213ENST00000565047 SLC25A45Q8N413 288 aa15.1■□□□□ 0.01
CLN3-213ENST00000565047 OXR1Q8N573 874 aa15.1■□□□□ 0.01
CLN3-213ENST00000565047 NETO2Q8NC67 525 aa15.1■□□□□ 0.01
CLN3-213ENST00000565047 OR13H1Q8NG92 308 aa15.1■□□□□ 0.01
CLN3-213ENST00000565047 KLHDC7BQ96G42 594 aa15.1■□□□□ 0.01
CLN3-213ENST00000565047 LENG8Q96PV6 779 aaPredicted RBP15.1■□□□□ 0.01
CLN3-213ENST00000565047 KCTD15Q96SI1 283 aaPredicted RBP15.1■□□□□ 0.01
CLN3-213ENST00000565047 SNRNP25Q9BV90 132 aaKnown RBP15.1■□□□□ 0.01
CLN3-213ENST00000565047 SLC17A9Q9BYT1 436 aa15.1■□□□□ 0.01
CLN3-213ENST00000565047 ZDHHC6Q9H6R6 413 aa15.1■□□□□ 0.01
CLN3-213ENST00000565047 CATSPERBQ9H7T0 1116 aa15.1■□□□□ 0.01
CLN3-213ENST00000565047 CNOT8Q9UFF9 292 aaKnown RBP15.1■□□□□ 0.01
CLN3-213ENST00000565047 GGT7Q9UJ14 662 aa15.1■□□□□ 0.01
CLN3-213ENST00000565047 HPCAL4Q9UM19 191 aa15.1■□□□□ 0.01
CLN3-213ENST00000565047 AP4E1Q9UPM8 1137 aa15.1■□□□□ 0.01
CLN3-213ENST00000565047 HS3ST3A1Q9Y663 406 aa15.1■□□□□ 0.01
CLN3-213ENST00000565047 ARID1BQ8NFD5 2236 aaPredicted RBP15.09■□□□□ 0.01
CLN3-213ENST00000565047 EIF3CLB5ME19 914 aaKnown RBP15.09■□□□□ 0.01
CLN3-213ENST00000565047 J3KR12 359 aa15.09■□□□□ 0.01
CLN3-213ENST00000565047 PCDH8O95206 1070 aa15.09■□□□□ 0.01
CLN3-213ENST00000565047 PAK4O96013 591 aaPredicted RBP15.09■□□□□ 0.01
CLN3-213ENST00000565047 ITGAVP06756 1048 aa15.09■□□□□ 0.01
CLN3-213ENST00000565047 IL1R2P27930 398 aa15.09■□□□□ 0.01
CLN3-213ENST00000565047 MIPP30301 263 aa15.09■□□□□ 0.01
CLN3-213ENST00000565047 ARRB1P49407 418 aaPredicted RBP15.09■□□□□ 0.01
CLN3-213ENST00000565047 NDST2P52849 883 aa15.09■□□□□ 0.01
CLN3-213ENST00000565047 CLDN2P57739 230 aa15.09■□□□□ 0.01
CLN3-213ENST00000565047 SNRPD1P62314 119 aaKnown RBP15.09■□□□□ 0.01
CLN3-213ENST00000565047 RPS21P63220 83 aaKnown RBP15.09■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms