RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 ITPRIPL1Q6GPH6 555 aa16.82■□□□□ 0.28
VPS4A-202ENST00000562754 PKN3Q6P5Z2 889 aa16.82■□□□□ 0.28
VPS4A-202ENST00000562754 CHPFQ8IZ52 775 aa16.82■□□□□ 0.28
VPS4A-202ENST00000562754 OR2AP1Q8NGE2 309 aa16.82■□□□□ 0.28
VPS4A-202ENST00000562754 OR2A12Q8NGT7 310 aa16.82■□□□□ 0.28
VPS4A-202ENST00000562754 OR6K2Q8NGY2 324 aa16.82■□□□□ 0.28
VPS4A-202ENST00000562754 KCNV2Q8TDN2 545 aa16.82■□□□□ 0.28
VPS4A-202ENST00000562754 PTPRN2Q92932 1015 aa16.82■□□□□ 0.28
VPS4A-202ENST00000562754 IMP4Q96G21 291 aaKnown RBP16.82■□□□□ 0.28
VPS4A-202ENST00000562754 OXNAD1Q96HP4 312 aaPredicted RBP16.82■□□□□ 0.28
VPS4A-202ENST00000562754 GDAP1L1Q96MZ0 367 aa16.82■□□□□ 0.28
VPS4A-202ENST00000562754 NUDCD1Q96RS6 583 aa16.82■□□□□ 0.28
VPS4A-202ENST00000562754 SEMA3CQ99985 751 aa16.82■□□□□ 0.28
VPS4A-202ENST00000562754 MLPHQ9BV36 600 aaPredicted RBP16.82■□□□□ 0.28
VPS4A-202ENST00000562754 SLC25A51Q9H1U9 297 aa16.82■□□□□ 0.28
VPS4A-202ENST00000562754 MRPS17Q9Y2R5 130 aaKnown RBP16.82■□□□□ 0.28
VPS4A-202ENST00000562754 TTC28Q96AY4 2481 aa16.82■□□□□ 0.28
VPS4A-202ENST00000562754 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP16.81■□□□□ 0.28
VPS4A-202ENST00000562754 EDDM13A0A1B0GTR0 161 aa16.81■□□□□ 0.28
VPS4A-202ENST00000562754 NPC1O15118 1278 aa16.81■□□□□ 0.28
VPS4A-202ENST00000562754 DCXO43602 365 aa16.81■□□□□ 0.28
VPS4A-202ENST00000562754 BNIP3LO60238 219 aa16.81■□□□□ 0.28
VPS4A-202ENST00000562754 SIN3BO75182 1162 aa16.81■□□□□ 0.28
VPS4A-202ENST00000562754 IVDP26440 423 aa16.81■□□□□ 0.28
VPS4A-202ENST00000562754 NTSR1P30989 418 aa16.81■□□□□ 0.28
VPS4A-202ENST00000562754 CSNK1DP48730 415 aa16.81■□□□□ 0.28
VPS4A-202ENST00000562754 CCNHP51946 323 aaPredicted RBP16.81■□□□□ 0.28
VPS4A-202ENST00000562754 ITKQ08881 620 aa16.81■□□□□ 0.28
VPS4A-202ENST00000562754 SIGLEC14Q08ET2 396 aa16.81■□□□□ 0.28
VPS4A-202ENST00000562754 NSUN2Q08J23 767 aaKnown RBP eCLIP16.81■□□□□ 0.28
VPS4A-202ENST00000562754 GPS1Q13098 491 aa16.81■□□□□ 0.28
VPS4A-202ENST00000562754 CARD16Q5EG05 197 aa16.81■□□□□ 0.28
VPS4A-202ENST00000562754 TEX35Q5T0J7 233 aa16.81■□□□□ 0.28
VPS4A-202ENST00000562754 C9orf64Q5T6V5 341 aa16.81■□□□□ 0.28
VPS4A-202ENST00000562754 DPY19L3Q6ZPD9 716 aa16.81■□□□□ 0.28
VPS4A-202ENST00000562754 MAATS1Q7Z4T9 603 aa16.81■□□□□ 0.28
VPS4A-202ENST00000562754 SRLQ86TD4 932 aa16.81■□□□□ 0.28
VPS4A-202ENST00000562754 PRPF39Q86UA1 669 aaKnown RBP16.81■□□□□ 0.28
VPS4A-202ENST00000562754 KLHDC8BQ8IXV7 354 aa16.81■□□□□ 0.28
VPS4A-202ENST00000562754 CHST14Q8NCH0 376 aa16.81■□□□□ 0.28
VPS4A-202ENST00000562754 SPATA22Q8NHS9 363 aa16.81■□□□□ 0.28
VPS4A-202ENST00000562754 RPLP0P6Q8NHW5 317 aa16.81■□□□□ 0.28
VPS4A-202ENST00000562754 EDAQ92838 391 aa16.81■□□□□ 0.28
VPS4A-202ENST00000562754 TADA1Q96BN2 335 aa16.81■□□□□ 0.28
VPS4A-202ENST00000562754 FCRL5Q96RD9 977 aa16.81■□□□□ 0.28
VPS4A-202ENST00000562754 GABRG3Q99928 467 aa16.81■□□□□ 0.28
VPS4A-202ENST00000562754 NOD2Q9HC29 1040 aa16.81■□□□□ 0.28
VPS4A-202ENST00000562754 ASIC3Q9UHC3 531 aa16.81■□□□□ 0.28
VPS4A-202ENST00000562754 EVLQ9UI08 416 aaPredicted RBP16.81■□□□□ 0.28
VPS4A-202ENST00000562754 SLC8A2Q9UPR5 921 aa16.81■□□□□ 0.28
VPS4A-202ENST00000562754 FAM170BA6NMN3 283 aa16.8■□□□□ 0.28
VPS4A-202ENST00000562754 BHMG1C9JSJ3 638 aaPredicted RBP16.8■□□□□ 0.28
VPS4A-202ENST00000562754 EPHX1P07099 455 aa16.8■□□□□ 0.28
VPS4A-202ENST00000562754 GKP32189 559 aa16.8■□□□□ 0.28
VPS4A-202ENST00000562754 ACTN2P35609 894 aa16.8■□□□□ 0.28
VPS4A-202ENST00000562754 CD86P42081 329 aa16.8■□□□□ 0.28
VPS4A-202ENST00000562754 SCNN1BP51168 640 aa16.8■□□□□ 0.28
VPS4A-202ENST00000562754 AP1S1P61966 158 aa16.8■□□□□ 0.28
VPS4A-202ENST00000562754 SNRPD1P62314 119 aaKnown RBP16.8■□□□□ 0.28
VPS4A-202ENST00000562754 SKOR1P84550 965 aa16.8■□□□□ 0.28
VPS4A-202ENST00000562754 SLC7A5Q01650 507 aa16.8■□□□□ 0.28
VPS4A-202ENST00000562754 LRRC32Q14392 662 aa16.8■□□□□ 0.28
VPS4A-202ENST00000562754 E2F5Q15329 346 aa16.8■□□□□ 0.28
VPS4A-202ENST00000562754 PARP6Q2NL67 630 aa16.8■□□□□ 0.28
VPS4A-202ENST00000562754 NCEH1Q6PIU2 408 aa16.8■□□□□ 0.28
VPS4A-202ENST00000562754 PLPP6Q8IY26 295 aa16.8■□□□□ 0.28
VPS4A-202ENST00000562754 TXNDC5Q8NBS9 432 aaKnown RBP16.8■□□□□ 0.28
VPS4A-202ENST00000562754 PJA1Q8NG27 643 aa16.8■□□□□ 0.28
VPS4A-202ENST00000562754 ERLEC1Q96DZ1 483 aa16.8■□□□□ 0.28
VPS4A-202ENST00000562754 RBM15Q96T37 977 aaKnown RBP eCLIP16.8■□□□□ 0.283e-7■■■■■ 37.4
VPS4A-202ENST00000562754 TRIM31Q9BZY9 425 aa16.8■□□□□ 0.28
VPS4A-202ENST00000562754 LMAN1LQ9HAT1 526 aa16.8■□□□□ 0.28
VPS4A-202ENST00000562754 ETNK1Q9HBU6 452 aa16.8■□□□□ 0.28
VPS4A-202ENST00000562754 SCUBE2Q9NQ36 999 aa16.8■□□□□ 0.28
VPS4A-202ENST00000562754 PRSS16Q9NQE7 514 aa16.8■□□□□ 0.28
VPS4A-202ENST00000562754 RAB6BQ9NRW1 208 aa16.8■□□□□ 0.28
VPS4A-202ENST00000562754 UBP1Q9NZI7 540 aa16.8■□□□□ 0.28
VPS4A-202ENST00000562754 HECAQ9UBI9 543 aaPredicted RBP16.8■□□□□ 0.28
VPS4A-202ENST00000562754 BDP1A6H8Y1 2624 aa16.8■□□□□ 0.28
VPS4A-202ENST00000562754 HEXIM1O94992 359 aaKnown RBP16.79■□□□□ 0.28
VPS4A-202ENST00000562754 MT-CYBP00156 380 aaPredicted RBP16.79■□□□□ 0.28
VPS4A-202ENST00000562754 PDGFBP01127 241 aaPredicted RBP16.79■□□□□ 0.28
VPS4A-202ENST00000562754 COL9A1P20849 921 aa16.79■□□□□ 0.28
VPS4A-202ENST00000562754 FDFT1P37268 417 aa16.79■□□□□ 0.28
VPS4A-202ENST00000562754 RPL21P46778 160 aaKnown RBP16.79■□□□□ 0.28
VPS4A-202ENST00000562754 CAMK2GQ13555 558 aaPredicted RBP16.79■□□□□ 0.28
VPS4A-202ENST00000562754 SEMA5AQ13591 1074 aa16.79■□□□□ 0.28
VPS4A-202ENST00000562754 GAS6Q14393 721 aa16.79■□□□□ 0.28
VPS4A-202ENST00000562754 MYLK3Q32MK0 819 aa16.79■□□□□ 0.28
VPS4A-202ENST00000562754 DUPD1Q68J44 220 aa16.79■□□□□ 0.28
VPS4A-202ENST00000562754 CWF19L1Q69YN2 538 aaKnown RBP16.79■□□□□ 0.28
VPS4A-202ENST00000562754 KDELC1Q6UW63 502 aa16.79■□□□□ 0.28
VPS4A-202ENST00000562754 C4orf22Q6V702 233 aa16.79■□□□□ 0.28
VPS4A-202ENST00000562754 TRMT11Q7Z4G4 463 aaKnown RBP16.79■□□□□ 0.28
VPS4A-202ENST00000562754 STK40Q8N2I9 435 aa16.79■□□□□ 0.28
VPS4A-202ENST00000562754 RYBPQ8N488 228 aaPredicted RBP16.79■□□□□ 0.28
VPS4A-202ENST00000562754 CCHCR1Q8TD31 782 aa16.79■□□□□ 0.28
VPS4A-202ENST00000562754 NELL2Q99435 816 aa16.79■□□□□ 0.28
VPS4A-202ENST00000562754 ERP44Q9BS26 406 aa16.79■□□□□ 0.28
VPS4A-202ENST00000562754 DPH5Q9H2P9 285 aa16.79■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms