RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 SPEGQ15772 3267 aa10.39□□□□□ -0.75
LDLR-214ENST00000560628 PTPRBP23467 1997 aa10.39□□□□□ -0.75
LDLR-214ENST00000560628 ANKRD62A6NC57 917 aa10.39□□□□□ -0.75
LDLR-214ENST00000560628 POM121BA6NF01 834 aa10.39□□□□□ -0.75
LDLR-214ENST00000560628 NEMP1O14524 444 aa10.39□□□□□ -0.75
LDLR-214ENST00000560628 FFAR2O15552 330 aa10.39□□□□□ -0.75
LDLR-214ENST00000560628 SIGLEC6O43699 453 aa10.39□□□□□ -0.75
LDLR-214ENST00000560628 POP4O95707 220 aaKnown RBP10.39□□□□□ -0.75
LDLR-214ENST00000560628 MBD3O95983 291 aa10.39□□□□□ -0.75
LDLR-214ENST00000560628 UGT2B4P06133 528 aa10.39□□□□□ -0.75
LDLR-214ENST00000560628 FERP16591 822 aa10.39□□□□□ -0.75
LDLR-214ENST00000560628 CKMT2P17540 419 aa10.39□□□□□ -0.75
LDLR-214ENST00000560628 DGKAP23743 735 aa10.39□□□□□ -0.75
LDLR-214ENST00000560628 ABL2P42684 1182 aa10.39□□□□□ -0.75
LDLR-214ENST00000560628 ACADVLP49748 655 aa10.39□□□□□ -0.75
LDLR-214ENST00000560628 GEMIN4P57678 1058 aaKnown RBP10.39□□□□□ -0.75
LDLR-214ENST00000560628 SNRPD1P62314 119 aaKnown RBP10.39□□□□□ -0.75
LDLR-214ENST00000560628 OGDHQ02218 1023 aa10.39□□□□□ -0.75
LDLR-214ENST00000560628 SGCGQ13326 291 aa10.39□□□□□ -0.75
LDLR-214ENST00000560628 CAMK2BQ13554 666 aa10.39□□□□□ -0.75
LDLR-214ENST00000560628 TMEM259Q4ZIN3 620 aa10.39□□□□□ -0.75
LDLR-214ENST00000560628 ZNF805Q5CZA5 627 aa10.39□□□□□ -0.75
LDLR-214ENST00000560628 LRRC73Q5JTD7 316 aa10.39□□□□□ -0.75
LDLR-214ENST00000560628 DCUN1D2Q6PH85 259 aa10.39□□□□□ -0.75
LDLR-214ENST00000560628 KDM7AQ6ZMT4 941 aa10.39□□□□□ -0.75
LDLR-214ENST00000560628 GCNT7Q6ZNI0 430 aa10.39□□□□□ -0.75
LDLR-214ENST00000560628 TMPRSS12Q86WS5 348 aa10.39□□□□□ -0.75
LDLR-214ENST00000560628 PLPP6Q8IY26 295 aa10.39□□□□□ -0.75
LDLR-214ENST00000560628 RTL3Q8N8U3 475 aaKnown RBP10.39□□□□□ -0.75
LDLR-214ENST00000560628 OR2AP1Q8NGE2 309 aa10.39□□□□□ -0.75
LDLR-214ENST00000560628 HNRNPLLQ8WVV9 542 aaKnown RBP10.39□□□□□ -0.75
LDLR-214ENST00000560628 BAP1Q92560 729 aa10.39□□□□□ -0.75
LDLR-214ENST00000560628 HMCESQ96FZ2 354 aa10.39□□□□□ -0.75
LDLR-214ENST00000560628 KLHL32Q96NJ5 620 aa10.39□□□□□ -0.75
LDLR-214ENST00000560628 CNPY3Q9BT09 278 aa10.39□□□□□ -0.75
LDLR-214ENST00000560628 RETREG1Q9H6L5 497 aa10.39□□□□□ -0.75
LDLR-214ENST00000560628 RTN4Q9NQC3 1192 aaKnown RBP10.39□□□□□ -0.75
LDLR-214ENST00000560628 GPATCH2LQ9NWQ4 482 aa10.39□□□□□ -0.75
LDLR-214ENST00000560628 GGT7Q9UJ14 662 aa10.39□□□□□ -0.75
LDLR-214ENST00000560628 FZD10Q9ULW2 581 aa10.39□□□□□ -0.75
LDLR-214ENST00000560628 LHX6Q9UPM6 363 aa10.39□□□□□ -0.75
LDLR-214ENST00000560628 ITM2BQ9Y287 266 aa10.39□□□□□ -0.75
LDLR-214ENST00000560628 HS3ST3A1Q9Y663 406 aa10.39□□□□□ -0.75
LDLR-214ENST00000560628 KNTC1P50748 2209 aa10.39□□□□□ -0.75
LDLR-214ENST00000560628 DOCK4Q8N1I0 1966 aa10.39□□□□□ -0.75
LDLR-214ENST00000560628 NYNRINQ9P2P1 1898 aaKnown RBP10.38□□□□□ -0.75
LDLR-214ENST00000560628 RASA4BC9J798 803 aa10.38□□□□□ -0.75
LDLR-214ENST00000560628 RASA4O43374 803 aa10.38□□□□□ -0.75
LDLR-214ENST00000560628 AP1G1O43747 822 aa10.38□□□□□ -0.75
LDLR-214ENST00000560628 TMCC1O94876 653 aa10.38□□□□□ -0.75
LDLR-214ENST00000560628 GSRP00390 522 aa10.38□□□□□ -0.75
LDLR-214ENST00000560628 C1SP09871 688 aa10.38□□□□□ -0.75
LDLR-214ENST00000560628 CCDC172P0C7W6 258 aa10.38□□□□□ -0.75
LDLR-214ENST00000560628 MYF5P13349 255 aa10.38□□□□□ -0.75
LDLR-214ENST00000560628 ITIH2P19823 946 aa10.38□□□□□ -0.75
LDLR-214ENST00000560628 TARDBPQ13148 414 aaKnown RBP eCLIP10.38□□□□□ -0.75
LDLR-214ENST00000560628 ZNF211Q13398 564 aaPredicted RBP10.38□□□□□ -0.75
LDLR-214ENST00000560628 PROX2Q3B8N5 592 aa10.38□□□□□ -0.75
LDLR-214ENST00000560628 PPP1R15BQ5SWA1 713 aa10.38□□□□□ -0.75
LDLR-214ENST00000560628 HES3Q5TGS1 186 aa10.38□□□□□ -0.75
LDLR-214ENST00000560628 KIAA1161Q6NSJ0 714 aa10.38□□□□□ -0.75
LDLR-214ENST00000560628 GDPD4Q6W3E5 623 aa10.38□□□□□ -0.75
LDLR-214ENST00000560628 TMC6Q7Z403 805 aa10.38□□□□□ -0.75
LDLR-214ENST00000560628 PTAR1Q7Z6K3 402 aaPredicted RBP10.38□□□□□ -0.75
LDLR-214ENST00000560628 ABI3BPQ7Z7G0 1075 aa10.38□□□□□ -0.75
LDLR-214ENST00000560628 TTC7BQ86TV6 843 aa10.38□□□□□ -0.75
LDLR-214ENST00000560628 SLC22A18ASQ8N1D0 253 aa10.38□□□□□ -0.75
LDLR-214ENST00000560628 PDCD7Q8N8D1 485 aaKnown RBP10.38□□□□□ -0.75
LDLR-214ENST00000560628 VOPP1Q96AW1 172 aa10.38□□□□□ -0.75
LDLR-214ENST00000560628 C1QTNF2Q9BXJ5 285 aa10.38□□□□□ -0.75
LDLR-214ENST00000560628 NAT10Q9H0A0 1025 aaKnown RBP10.38□□□□□ -0.75
LDLR-214ENST00000560628 DNAJC28Q9NX36 388 aa10.38□□□□□ -0.75
LDLR-214ENST00000560628 IPO11Q9UI26 975 aaKnown RBP10.38□□□□□ -0.75
LDLR-214ENST00000560628 CFAP47Q6ZTR5 3102 aa10.38□□□□□ -0.75
LDLR-214ENST00000560628 ARID1BQ8NFD5 2236 aaPredicted RBP10.37□□□□□ -0.75
LDLR-214ENST00000560628 ZSCAN5CA6NGD5 496 aaPredicted RBP10.37□□□□□ -0.75
LDLR-214ENST00000560628 A6NNZ2 444 aa10.37□□□□□ -0.75
LDLR-214ENST00000560628 SMTNL1A8MU46 457 aa10.37□□□□□ -0.75
LDLR-214ENST00000560628 INSIG1O15503 277 aa10.37□□□□□ -0.75
LDLR-214ENST00000560628 ATMINO43313 823 aaPredicted RBP10.37□□□□□ -0.75
LDLR-214ENST00000560628 TSPAN6O43657 245 aa10.37□□□□□ -0.75
LDLR-214ENST00000560628 MMP20O60882 483 aa10.37□□□□□ -0.75
LDLR-214ENST00000560628 PIAS2O75928 621 aa10.37□□□□□ -0.75
LDLR-214ENST00000560628 NEBLO76041 1014 aa10.37□□□□□ -0.75
LDLR-214ENST00000560628 TIMP2P16035 220 aa10.37□□□□□ -0.75
LDLR-214ENST00000560628 PSMA2P25787 234 aa10.37□□□□□ -0.75
LDLR-214ENST00000560628 RHOAP61586 193 aa10.37□□□□□ -0.75
LDLR-214ENST00000560628 DAB2P98082 770 aa10.37□□□□□ -0.75
LDLR-214ENST00000560628 MAMLD1Q13495 774 aa10.37□□□□□ -0.75
LDLR-214ENST00000560628 SERINC3Q13530 473 aa10.37□□□□□ -0.75
LDLR-214ENST00000560628 FZD2Q14332 565 aa10.37□□□□□ -0.75
LDLR-214ENST00000560628 CYTH1Q15438 398 aa10.37□□□□□ -0.75
LDLR-214ENST00000560628 ASIC2Q16515 512 aa10.37□□□□□ -0.75
LDLR-214ENST00000560628 COL28A1Q2UY09 1125 aa10.37□□□□□ -0.75
LDLR-214ENST00000560628 CAVIN1Q6NZI2 390 aaKnown RBP10.37□□□□□ -0.75
LDLR-214ENST00000560628 RAB7BQ96AH8 199 aa10.37□□□□□ -0.75
LDLR-214ENST00000560628 CELF6Q96J87 481 aaKnown RBP10.37□□□□□ -0.75
LDLR-214ENST00000560628 LRIG1Q96JA1 1093 aa10.37□□□□□ -0.75
LDLR-214ENST00000560628 NAP1L5Q96NT1 182 aaPredicted RBP10.37□□□□□ -0.75
LDLR-214ENST00000560628 KLF6Q99612 283 aaPredicted RBP10.37□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms