RNA–Protein interactions for RNA: ENST00000560514.1

TSPAN3-208, Transcript of tetraspanin 3, humanhuman

TSL 2

Gene TSPAN3, Length 638 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN3-208ENST00000560514 RNF103O00237 685 aa18.15■□□□□ 0.5
TSPAN3-208ENST00000560514 NTN3O00634 580 aaPredicted RBP18.15■□□□□ 0.5
TSPAN3-208ENST00000560514 THAP12O43422 761 aa18.15■□□□□ 0.5
TSPAN3-208ENST00000560514 TSPAN6O43657 245 aa18.15■□□□□ 0.5
TSPAN3-208ENST00000560514 HSF2BPO75031 334 aa18.15■□□□□ 0.5
TSPAN3-208ENST00000560514 PAGE1O75459 146 aa18.15■□□□□ 0.5
TSPAN3-208ENST00000560514 GCATO75600 419 aa18.15■□□□□ 0.5
TSPAN3-208ENST00000560514 CNTN5O94779 1100 aa18.15■□□□□ 0.5
TSPAN3-208ENST00000560514 TLE1Q04724 770 aa18.15■□□□□ 0.5
TSPAN3-208ENST00000560514 LRRC63Q05C16 580 aa18.15■□□□□ 0.5
TSPAN3-208ENST00000560514 MEA1Q16626 185 aa18.15■□□□□ 0.5
TSPAN3-208ENST00000560514 CCDC40Q4G0X9 1142 aa18.15■□□□□ 0.5
TSPAN3-208ENST00000560514 LRRC31Q6UY01 552 aa18.15■□□□□ 0.5
TSPAN3-208ENST00000560514 SETD3Q86TU7 594 aaPredicted RBP18.15■□□□□ 0.5
TSPAN3-208ENST00000560514 TBATAQ96M53 351 aa18.15■□□□□ 0.5
TSPAN3-208ENST00000560514 SLC2A13Q96QE2 648 aa18.15■□□□□ 0.5
TSPAN3-208ENST00000560514 KLF6Q99612 283 aaPredicted RBP18.15■□□□□ 0.5
TSPAN3-208ENST00000560514 PISDQ9UG56 409 aa18.15■□□□□ 0.5
TSPAN3-208ENST00000560514 ACSL6Q9UKU0 697 aa18.15■□□□□ 0.5
TSPAN3-208ENST00000560514 WASF2Q9Y6W5 498 aa18.15■□□□□ 0.5
TSPAN3-208ENST00000560514 CASC3O15234 703 aaKnown RBP18.14■□□□□ 0.49
TSPAN3-208ENST00000560514 PMM2O15305 246 aa18.14■□□□□ 0.49
TSPAN3-208ENST00000560514 YY2O15391 372 aa18.14■□□□□ 0.49
TSPAN3-208ENST00000560514 P4HA2O15460 535 aa18.14■□□□□ 0.49
TSPAN3-208ENST00000560514 NOBOXO60393 691 aa18.14■□□□□ 0.49
TSPAN3-208ENST00000560514 GRAP2O75791 330 aa18.14■□□□□ 0.49
TSPAN3-208ENST00000560514 ZNF202O95125 648 aa18.14■□□□□ 0.49
TSPAN3-208ENST00000560514 HGFP14210 728 aa18.14■□□□□ 0.49
TSPAN3-208ENST00000560514 PFN3P60673 137 aa18.14■□□□□ 0.49
TSPAN3-208ENST00000560514 PPARDQ03181 441 aa18.14■□□□□ 0.49
TSPAN3-208ENST00000560514 SRSF6Q13247 344 aaKnown RBP18.14■□□□□ 0.49
TSPAN3-208ENST00000560514 PDCLQ13371 301 aa18.14■□□□□ 0.49
TSPAN3-208ENST00000560514 C5orf22Q49AR2 442 aa18.14■□□□□ 0.49
TSPAN3-208ENST00000560514 TPRG1LQ5T0D9 272 aa18.14■□□□□ 0.49
TSPAN3-208ENST00000560514 B3GNT8Q7Z7M8 397 aa18.14■□□□□ 0.49
TSPAN3-208ENST00000560514 ARHGEF19Q8IW93 802 aa18.14■□□□□ 0.49
TSPAN3-208ENST00000560514 PCDH20Q8N6Y1 951 aaKnown RBP18.14■□□□□ 0.49
TSPAN3-208ENST00000560514 ARL10Q8N8L6 244 aa18.14■□□□□ 0.49
TSPAN3-208ENST00000560514 ZNF606Q8WXB4 792 aa18.14■□□□□ 0.49
TSPAN3-208ENST00000560514 RAB7BQ96AH8 199 aa18.14■□□□□ 0.49
TSPAN3-208ENST00000560514 SPON2Q9BUD6 331 aa18.14■□□□□ 0.49
TSPAN3-208ENST00000560514 LRRC61Q9BV99 259 aa18.14■□□□□ 0.49
TSPAN3-208ENST00000560514 C1QTNF2Q9BXJ5 285 aa18.14■□□□□ 0.49
TSPAN3-208ENST00000560514 FOXP3Q9BZS1 431 aa18.14■□□□□ 0.49
TSPAN3-208ENST00000560514 CEP44Q9C0F1 390 aa18.14■□□□□ 0.49
TSPAN3-208ENST00000560514 SLC25A18Q9H1K4 315 aa18.14■□□□□ 0.49
TSPAN3-208ENST00000560514 TCEAL2Q9H3H9 227 aaPredicted RBP18.14■□□□□ 0.49
TSPAN3-208ENST00000560514 ASNSD1Q9NWL6 643 aa18.14■□□□□ 0.49
TSPAN3-208ENST00000560514 SIRPGQ9P1W8 387 aa18.14■□□□□ 0.49
TSPAN3-208ENST00000560514 PCDHGA4Q9Y5G9 962 aa18.14■□□□□ 0.49
TSPAN3-208ENST00000560514 A0A0D9SEW6 157 aa18.13■□□□□ 0.49
TSPAN3-208ENST00000560514 D6RAR5 112 aa18.13■□□□□ 0.49
TSPAN3-208ENST00000560514 NVLO15381 856 aaKnown RBP18.13■□□□□ 0.49
TSPAN3-208ENST00000560514 RPLP0P05388 317 aaKnown RBP18.13■□□□□ 0.49
TSPAN3-208ENST00000560514 TSHRP16473 764 aa18.13■□□□□ 0.49
TSPAN3-208ENST00000560514 GNA15P30679 374 aa18.13■□□□□ 0.49
TSPAN3-208ENST00000560514 OR1E1P30953 314 aa18.13■□□□□ 0.49
TSPAN3-208ENST00000560514 BLKP51451 505 aa18.13■□□□□ 0.49
TSPAN3-208ENST00000560514 UBAP2LQ14157 1087 aaKnown RBP18.13■□□□□ 0.49
TSPAN3-208ENST00000560514 ELOCQ15369 112 aa18.13■□□□□ 0.49
TSPAN3-208ENST00000560514 TBR1Q16650 682 aa18.13■□□□□ 0.49
TSPAN3-208ENST00000560514 ALFQ53S48 1182 aa18.13■□□□□ 0.49
TSPAN3-208ENST00000560514 CARD16Q5EG05 197 aa18.13■□□□□ 0.49
TSPAN3-208ENST00000560514 ZNF658Q5TYW1 1059 aaPredicted RBP18.13■□□□□ 0.49
TSPAN3-208ENST00000560514 PARS2Q7L3T8 475 aaKnown RBP18.13■□□□□ 0.49
TSPAN3-208ENST00000560514 TFAP2DQ7Z6R9 452 aa18.13■□□□□ 0.49
TSPAN3-208ENST00000560514 SDR16C5Q8N3Y7 309 aa18.13■□□□□ 0.49
TSPAN3-208ENST00000560514 RYBPQ8N488 228 aaPredicted RBP18.13■□□□□ 0.49
TSPAN3-208ENST00000560514 ASB12Q8WXK4 309 aa18.13■□□□□ 0.49
TSPAN3-208ENST00000560514 CCDC74AQ96AQ1 378 aa18.13■□□□□ 0.49
TSPAN3-208ENST00000560514 ARHGEF26Q96DR7 871 aa18.13■□□□□ 0.49
TSPAN3-208ENST00000560514 C1QTNF7Q9BXJ2 289 aa18.13■□□□□ 0.49
TSPAN3-208ENST00000560514 CPEB1Q9BZB8 566 aaKnown RBP18.13■□□□□ 0.49
TSPAN3-208ENST00000560514 ZDHHC6Q9H6R6 413 aa18.13■□□□□ 0.49
TSPAN3-208ENST00000560514 WDCPQ9H6R7 721 aa18.13■□□□□ 0.49
TSPAN3-208ENST00000560514 TLN1Q9Y490 2541 aaKnown RBP18.12■□□□□ 0.49
TSPAN3-208ENST00000560514 TRIM49BA6NDI0 452 aa18.12■□□□□ 0.49
TSPAN3-208ENST00000560514 ALPIP09923 528 aa18.12■□□□□ 0.49
TSPAN3-208ENST00000560514 CTSEP14091 401 aa18.12■□□□□ 0.49
TSPAN3-208ENST00000560514 SERPINH1P50454 418 aaKnown RBP18.12■□□□□ 0.49
TSPAN3-208ENST00000560514 CCNHP51946 323 aaPredicted RBP18.12■□□□□ 0.49
TSPAN3-208ENST00000560514 PMS1P54277 932 aaKnown RBP18.12■□□□□ 0.49
TSPAN3-208ENST00000560514 YPEL5P62699 121 aa18.12■□□□□ 0.49
TSPAN3-208ENST00000560514 CCL7P80098 99 aa18.12■□□□□ 0.49
TSPAN3-208ENST00000560514 SLC20A2Q08357 652 aa18.12■□□□□ 0.49
TSPAN3-208ENST00000560514 VASH2Q86V25 355 aa18.12■□□□□ 0.49
TSPAN3-208ENST00000560514 FSTL5Q8N475 847 aaPredicted RBP18.12■□□□□ 0.49
TSPAN3-208ENST00000560514 GTPBP4Q9BZE4 634 aaKnown RBP18.12■□□□□ 0.49
TSPAN3-208ENST00000560514 TKTL2Q9H0I9 626 aa18.12■□□□□ 0.49
TSPAN3-208ENST00000560514 LOXL2Q9Y4K0 774 aa18.12■□□□□ 0.49
TSPAN3-208ENST00000560514 UNC13CQ8NB66 2214 aa18.12■□□□□ 0.49
TSPAN3-208ENST00000560514 GP1BBP13224 206 aa18.11■□□□□ 0.49
TSPAN3-208ENST00000560514 CCKBRP32239 447 aa18.11■□□□□ 0.49
TSPAN3-208ENST00000560514 SNX16P57768 344 aa18.11■□□□□ 0.49
TSPAN3-208ENST00000560514 STIM1Q13586 685 aa18.11■□□□□ 0.49
TSPAN3-208ENST00000560514 COBLL1Q53SF7 1204 aa18.11■□□□□ 0.49
TSPAN3-208ENST00000560514 LVRNQ6Q4G3 990 aa18.11■□□□□ 0.49
TSPAN3-208ENST00000560514 MACC1Q6ZN28 852 aa18.11■□□□□ 0.49
TSPAN3-208ENST00000560514 C11orf57Q6ZUT1 292 aaPredicted RBP18.11■□□□□ 0.49
TSPAN3-208ENST00000560514 VPS36Q86VN1 386 aa18.11■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms