RNA–Protein interactions for RNA: ENST00000558285.5

USP3-208, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best) BASIC

Gene USP3, Length 1,742 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-208ENST00000558285 HSPA9P38646 679 aaKnown RBP8.82□□□□□ -1
USP3-208ENST00000558285 EIF4A3P38919 411 aaKnown RBP8.82□□□□□ -1
USP3-208ENST00000558285 ARHGAP25P42331 645 aa8.82□□□□□ -1
USP3-208ENST00000558285 ARRB1P49407 418 aaPredicted RBP8.82□□□□□ -1
USP3-208ENST00000558285 RHOAP61586 193 aa8.82□□□□□ -1
USP3-208ENST00000558285 STAT4Q14765 748 aa8.82□□□□□ -1
USP3-208ENST00000558285 CCDC6Q16204 474 aa8.82□□□□□ -1
USP3-208ENST00000558285 HGSNATQ68CP4 663 aa8.82□□□□□ -1
USP3-208ENST00000558285 KIAA1161Q6NSJ0 714 aa8.82□□□□□ -1
USP3-208ENST00000558285 RFX8Q6ZV50 586 aa8.82□□□□□ -1
USP3-208ENST00000558285 ERN2Q76MJ5 926 aaKnown RBP8.82□□□□□ -1
USP3-208ENST00000558285 NLRP14Q86W24 1093 aa8.82□□□□□ -1
USP3-208ENST00000558285 TRIM69Q86WT6 500 aa8.82□□□□□ -1
USP3-208ENST00000558285 SLC41A1Q8IVJ1 513 aa8.82□□□□□ -1
USP3-208ENST00000558285 OR7D4Q8NG98 312 aa8.82□□□□□ -1
USP3-208ENST00000558285 OR2AP1Q8NGE2 309 aa8.82□□□□□ -1
USP3-208ENST00000558285 ZNF564Q8TBZ8 553 aaPredicted RBP8.82□□□□□ -1
USP3-208ENST00000558285 HCAR2Q8TDS4 363 aa8.82□□□□□ -1
USP3-208ENST00000558285 FEM1CQ96JP0 617 aa8.82□□□□□ -1
USP3-208ENST00000558285 FAM129BQ96TA1 746 aa8.82□□□□□ -1
USP3-208ENST00000558285 HDAC8Q9BY41 377 aa8.82□□□□□ -1
USP3-208ENST00000558285 CAPN10Q9HC96 672 aa8.82□□□□□ -1
USP3-208ENST00000558285 ABHD10Q9NUJ1 306 aa8.82□□□□□ -1
USP3-208ENST00000558285 EVA1BQ9NVM1 165 aa8.82□□□□□ -1
USP3-208ENST00000558285 ZNF446Q9NWS9 450 aa8.82□□□□□ -1
USP3-208ENST00000558285 TAS2R14Q9NYV8 317 aa8.82□□□□□ -1
USP3-208ENST00000558285 PCSK1NQ9UHG2 260 aa8.82□□□□□ -1
USP3-208ENST00000558285 INTUQ9ULD6 942 aa8.82□□□□□ -1
USP3-208ENST00000558285 ATXN2Q99700 1313 aaKnown RBP8.81□□□□□ -1
USP3-208ENST00000558285 PLXND1Q9Y4D7 1925 aa8.81□□□□□ -1
USP3-208ENST00000558285 MYO18AQ92614 2054 aaKnown RBP8.81□□□□□ -1
USP3-208ENST00000558285 A0A087X0T9 212 aa8.81□□□□□ -1
USP3-208ENST00000558285 A0A1W2PPC4 97 aa8.81□□□□□ -1
USP3-208ENST00000558285 ANTXRLA6NF34 631 aa8.81□□□□□ -1
USP3-208ENST00000558285 RASA4BC9J798 803 aa8.81□□□□□ -1
USP3-208ENST00000558285 PRAMEF26H0Y7S4 382 aa8.81□□□□□ -1
USP3-208ENST00000558285 RASA4O43374 803 aa8.81□□□□□ -1
USP3-208ENST00000558285 TSPAN6O43657 245 aa8.81□□□□□ -1
USP3-208ENST00000558285 PLRG1O43660 514 aaKnown RBP8.81□□□□□ -1
USP3-208ENST00000558285 SNAP91O60641 907 aa8.81□□□□□ -1
USP3-208ENST00000558285 GJB6O95452 261 aa8.81□□□□□ -1
USP3-208ENST00000558285 TMEM253P0C7T8 217 aa8.81□□□□□ -1
USP3-208ENST00000558285 FAM228BP0C875 321 aa8.81□□□□□ -1
USP3-208ENST00000558285 CEACAM1P13688 526 aa8.81□□□□□ -1
USP3-208ENST00000558285 ITGB7P26010 798 aa8.81□□□□□ -1
USP3-208ENST00000558285 ACSL1P33121 698 aa8.81□□□□□ -1
USP3-208ENST00000558285 MAN1A1P33908 653 aa8.81□□□□□ -1
USP3-208ENST00000558285 GALCP54803 685 aa8.81□□□□□ -1
USP3-208ENST00000558285 ADPRHP54922 357 aa8.81□□□□□ -1
USP3-208ENST00000558285 POLR2LP62875 67 aaKnown RBP8.81□□□□□ -1
USP3-208ENST00000558285 SGCGQ13326 291 aa8.81□□□□□ -1
USP3-208ENST00000558285 PDK2Q15119 407 aa8.81□□□□□ -1
USP3-208ENST00000558285 SH3PXD2AQ5TCZ1 1133 aa8.81□□□□□ -1
USP3-208ENST00000558285 NAPEPLDQ6IQ20 393 aa8.81□□□□□ -1
USP3-208ENST00000558285 NCEH1Q6PIU2 408 aa8.81□□□□□ -1
USP3-208ENST00000558285 IQCHQ86VS3 1027 aa8.81□□□□□ -1
USP3-208ENST00000558285 DNAAF5Q86Y56 855 aa8.81□□□□□ -1
USP3-208ENST00000558285 NDUFAF2Q8N183 169 aa8.81□□□□□ -1
USP3-208ENST00000558285 OR2A12Q8NGT7 310 aa8.81□□□□□ -1
USP3-208ENST00000558285 BIRC7Q96CA5 298 aa8.81□□□□□ -1
USP3-208ENST00000558285 ZNF599Q96NL3 588 aa8.81□□□□□ -1
USP3-208ENST00000558285 SNRNP25Q9BV90 132 aaKnown RBP8.81□□□□□ -1
USP3-208ENST00000558285 CINPQ9BW66 212 aaPredicted RBP8.81□□□□□ -1
USP3-208ENST00000558285 THAP2Q9H0W7 228 aa8.81□□□□□ -1
USP3-208ENST00000558285 NEUROG2Q9H2A3 272 aa8.81□□□□□ -1
USP3-208ENST00000558285 C6orf106Q9H6K1 298 aaPredicted RBP8.81□□□□□ -1
USP3-208ENST00000558285 ZDHHC6Q9H6R6 413 aa8.81□□□□□ -1
USP3-208ENST00000558285 GDF3Q9NR23 364 aa8.81□□□□□ -1
USP3-208ENST00000558285 SBDSQ9Y3A5 250 aaKnown RBP eCLIP8.81□□□□□ -1
USP3-208ENST00000558285 RRP15Q9Y3B9 282 aaKnown RBP8.81□□□□□ -1
USP3-208ENST00000558285 PCDHGB2Q9Y5G2 931 aa8.81□□□□□ -1
USP3-208ENST00000558285 SNX10Q9Y5X0 201 aa8.81□□□□□ -1
USP3-208ENST00000558285 GPR179Q6PRD1 2367 aa8.81□□□□□ -1
USP3-208ENST00000558285 KRIT1O00522 736 aa8.8□□□□□ -1
USP3-208ENST00000558285 NRDCO43847 1150 aa8.8□□□□□ -1
USP3-208ENST00000558285 LRCH4O75427 683 aa8.8□□□□□ -1
USP3-208ENST00000558285 PCDH8O95206 1070 aa8.8□□□□□ -1
USP3-208ENST00000558285 TRIM16O95361 564 aa8.8□□□□□ -1
USP3-208ENST00000558285 MX2P20592 715 aa8.8□□□□□ -1
USP3-208ENST00000558285 CA4P22748 312 aa8.8□□□□□ -1
USP3-208ENST00000558285 CD38P28907 300 aa8.8□□□□□ -1
USP3-208ENST00000558285 SLC1A1P43005 524 aa8.8□□□□□ -1
USP3-208ENST00000558285 CCT8P50990 548 aa8.8□□□□□ -1
USP3-208ENST00000558285 NOVA1P51513 510 aaKnown RBP8.8□□□□□ -1
USP3-208ENST00000558285 IRAK1P51617 712 aa8.8□□□□□ -1
USP3-208ENST00000558285 CCNHP51946 323 aaPredicted RBP8.8□□□□□ -1
USP3-208ENST00000558285 RPS21P63220 83 aaKnown RBP8.8□□□□□ -1
USP3-208ENST00000558285 ELP6Q0PNE2 266 aa8.8□□□□□ -1
USP3-208ENST00000558285 DPYSL2Q16555 572 aa8.8□□□□□ -1
USP3-208ENST00000558285 ZNF805Q5CZA5 627 aa8.8□□□□□ -1
USP3-208ENST00000558285 PPM1JQ5JR12 505 aa8.8□□□□□ -1
USP3-208ENST00000558285 ERAP2Q6P179 960 aa8.8□□□□□ -1
USP3-208ENST00000558285 LINGO4Q6UY18 593 aa8.8□□□□□ -1
USP3-208ENST00000558285 DCP2Q8IU60 420 aaKnown RBP8.8□□□□□ -1
USP3-208ENST00000558285 CCDC170Q8IYT3 715 aa8.8□□□□□ -1
USP3-208ENST00000558285 MINDY1Q8N5J2 469 aa8.8□□□□□ -1
USP3-208ENST00000558285 FRMD1Q8N878 549 aa8.8□□□□□ -1
USP3-208ENST00000558285 KCTD6Q8NC69 237 aa8.8□□□□□ -1
USP3-208ENST00000558285 GRIN3AQ8TCU5 1115 aa8.8□□□□□ -1
USP3-208ENST00000558285 TRAF3IP1Q8TDR0 691 aaPredicted RBP8.8□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms