RNA–Protein interactions for RNA: ENST00000558157.5

USP3-206, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,439 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-206ENST00000558157 GPR32O75388 356 aa11.03□□□□□ -0.64
USP3-206ENST00000558157 ZMPSTE24O75844 475 aa11.03□□□□□ -0.64
USP3-206ENST00000558157 RALBP11234 206 aa11.03□□□□□ -0.64
USP3-206ENST00000558157 SLC7A1P30825 629 aa11.03□□□□□ -0.64
USP3-206ENST00000558157 CDH15P55291 814 aa11.03□□□□□ -0.64
USP3-206ENST00000558157 NME5P56597 212 aa11.03□□□□□ -0.64
USP3-206ENST00000558157 PEX6Q13608 980 aa11.03□□□□□ -0.64
USP3-206ENST00000558157 RAB39AQ14964 217 aa11.03□□□□□ -0.64
USP3-206ENST00000558157 TMEM132AQ24JP5 1023 aa11.03□□□□□ -0.64
USP3-206ENST00000558157 ZBTB41Q5SVQ8 909 aa11.03□□□□□ -0.64
USP3-206ENST00000558157 ATF7IP2Q5U623 682 aa11.03□□□□□ -0.64
USP3-206ENST00000558157 GPR107Q5VW38 600 aa11.03□□□□□ -0.64
USP3-206ENST00000558157 SLFN12LQ6IEE8 588 aa11.03□□□□□ -0.64
USP3-206ENST00000558157 SV2AQ7L0J3 742 aa11.03□□□□□ -0.64
USP3-206ENST00000558157 ZBTB33Q86T24 672 aa11.03□□□□□ -0.64
USP3-206ENST00000558157 UNC45BQ8IWX7 931 aa11.03□□□□□ -0.64
USP3-206ENST00000558157 CADM3Q8N126 398 aa11.03□□□□□ -0.64
USP3-206ENST00000558157 SDR16C5Q8N3Y7 309 aa11.03□□□□□ -0.64
USP3-206ENST00000558157 DNAJC5GQ8N7S2 189 aa11.03□□□□□ -0.64
USP3-206ENST00000558157 ALPK1Q96QP1 1244 aa11.03□□□□□ -0.64
USP3-206ENST00000558157 COG4Q9H9E3 785 aa11.03□□□□□ -0.64
USP3-206ENST00000558157 GPN2Q9H9Y4 310 aaPredicted RBP11.03□□□□□ -0.64
USP3-206ENST00000558157 WDR41Q9HAD4 459 aa11.03□□□□□ -0.64
USP3-206ENST00000558157 CDHR5Q9HBB8 845 aa11.03□□□□□ -0.64
USP3-206ENST00000558157 HMG20AQ9NP66 347 aa11.03□□□□□ -0.64
USP3-206ENST00000558157 TCF7L2Q9NQB0 619 aa11.03□□□□□ -0.64
USP3-206ENST00000558157 DUS2Q9NX74 493 aaKnown RBP11.03□□□□□ -0.64
USP3-206ENST00000558157 PAK5Q9P286 719 aa11.03□□□□□ -0.64
USP3-206ENST00000558157 GINS2Q9Y248 185 aa11.03□□□□□ -0.64
USP3-206ENST00000558157 HMX2A2RU54 273 aa11.03□□□□□ -0.64
USP3-206ENST00000558157 EXTL3O43909 919 aa11.03□□□□□ -0.64
USP3-206ENST00000558157 MYCP01106 439 aaPredicted RBP11.03□□□□□ -0.64
USP3-206ENST00000558157 BMP2P12643 396 aa11.03□□□□□ -0.64
USP3-206ENST00000558157 MX2P20592 715 aa11.03□□□□□ -0.64
USP3-206ENST00000558157 MAP4P27816 1152 aaKnown RBP11.03□□□□□ -0.64
USP3-206ENST00000558157 ACLYP53396 1101 aa11.03□□□□□ -0.64
USP3-206ENST00000558157 EIF3EP60228 445 aaKnown RBP11.03□□□□□ -0.64
USP3-206ENST00000558157 RPL10AP62906 217 aaKnown RBP11.03□□□□□ -0.64
USP3-206ENST00000558157 CYP24A1Q07973 514 aa11.03□□□□□ -0.64
USP3-206ENST00000558157 BMPR2Q13873 1038 aa11.03□□□□□ -0.64
USP3-206ENST00000558157 FAM187BQ17R55 369 aa11.03□□□□□ -0.64
USP3-206ENST00000558157 C2CD6Q53TS8 623 aa11.03□□□□□ -0.64
USP3-206ENST00000558157 WDR44Q5JSH3 913 aa11.03□□□□□ -0.64
USP3-206ENST00000558157 INTS11Q5TA45 600 aaKnown RBP11.03□□□□□ -0.64
USP3-206ENST00000558157 N4BP2L1Q5TBK1 243 aaPredicted RBP11.03□□□□□ -0.64
USP3-206ENST00000558157 EEF1DP3Q658K8 133 aa11.03□□□□□ -0.64
USP3-206ENST00000558157 CDR2LQ86X02 465 aaPredicted RBP11.03□□□□□ -0.64
USP3-206ENST00000558157 SNX32Q86XE0 403 aa11.03□□□□□ -0.64
USP3-206ENST00000558157 MYO1HQ8N1T3 1032 aa11.03□□□□□ -0.64
USP3-206ENST00000558157 FAM71DQ8N9W8 422 aa11.03□□□□□ -0.64
USP3-206ENST00000558157 TRAF3IP1Q8TDR0 691 aaPredicted RBP11.03□□□□□ -0.64
USP3-206ENST00000558157 RAB2BQ8WUD1 216 aa11.03□□□□□ -0.64
USP3-206ENST00000558157 OSMRQ99650 979 aa11.03□□□□□ -0.64
USP3-206ENST00000558157 UNC93B1Q9H1C4 597 aa11.03□□□□□ -0.64
USP3-206ENST00000558157 RMND5AQ9H871 391 aa11.03□□□□□ -0.64
USP3-206ENST00000558157 EMCNQ9ULC0 261 aa11.03□□□□□ -0.64
USP3-206ENST00000558157 CORINQ9Y5Q5 1042 aa11.03□□□□□ -0.64
USP3-206ENST00000558157 CNTNAP2Q9UHC6 1331 aa11.02□□□□□ -0.64
USP3-206ENST00000558157 BRCA2P51587 3418 aa11.02□□□□□ -0.64
USP3-206ENST00000558157 ANKRD34BA5PLL1 514 aa11.02□□□□□ -0.65
USP3-206ENST00000558157 CLDN25C9JDP6 229 aa11.02□□□□□ -0.65
USP3-206ENST00000558157 J3QRK9 145 aa11.02□□□□□ -0.65
USP3-206ENST00000558157 FOXD2O60548 495 aaPredicted RBP11.02□□□□□ -0.65
USP3-206ENST00000558157 LSM8O95777 96 aaKnown RBP11.02□□□□□ -0.65
USP3-206ENST00000558157 TCF4P15884 667 aa11.02□□□□□ -0.65
USP3-206ENST00000558157 ACOT2P49753 483 aa11.02□□□□□ -0.65
USP3-206ENST00000558157 RPL7AP62424 266 aaKnown RBP11.02□□□□□ -0.65
USP3-206ENST00000558157 ZNF252P-AS1Q0IIN9 211 aa11.02□□□□□ -0.65
USP3-206ENST00000558157 PMS2P3Q13401 168 aa11.02□□□□□ -0.65
USP3-206ENST00000558157 NAB1Q13506 487 aa11.02□□□□□ -0.65
USP3-206ENST00000558157 ART3Q13508 389 aa11.02□□□□□ -0.65
USP3-206ENST00000558157 HADHQ16836 314 aaKnown RBP11.02□□□□□ -0.65
USP3-206ENST00000558157 SEZ6Q53EL9 994 aa11.02□□□□□ -0.65
USP3-206ENST00000558157 SMYD5Q6GMV2 418 aa11.02□□□□□ -0.65
USP3-206ENST00000558157 DNAJC24Q6P3W2 148 aa11.02□□□□□ -0.65
USP3-206ENST00000558157 DCUN1D2Q6PH85 259 aa11.02□□□□□ -0.65
USP3-206ENST00000558157 C4orf22Q6V702 233 aa11.02□□□□□ -0.65
USP3-206ENST00000558157 ZBTB49Q6ZSB9 765 aa11.02□□□□□ -0.65
USP3-206ENST00000558157 ZNF786Q8N393 782 aa11.02□□□□□ -0.65
USP3-206ENST00000558157 MCUQ8NE86 351 aa11.02□□□□□ -0.65
USP3-206ENST00000558157 HPS1Q92902 700 aa11.02□□□□□ -0.65
USP3-206ENST00000558157 CCDC127Q96BQ5 260 aa11.02□□□□□ -0.65
USP3-206ENST00000558157 FBXL8Q96CD0 374 aa11.02□□□□□ -0.65
USP3-206ENST00000558157 FAF2Q96CS3 445 aa11.02□□□□□ -0.65
USP3-206ENST00000558157 CPB2Q96IY4 423 aa11.02□□□□□ -0.65
USP3-206ENST00000558157 SH3GL1Q99961 368 aa11.02□□□□□ -0.65
USP3-206ENST00000558157 KLHL25Q9H0H3 589 aa11.02□□□□□ -0.65
USP3-206ENST00000558157 TRPV6Q9H1D0 765 aa11.02□□□□□ -0.65
USP3-206ENST00000558157 COPG2Q9UBF2 871 aa11.02□□□□□ -0.65
USP3-206ENST00000558157 CNTN6Q9UQ52 1028 aa11.02□□□□□ -0.65
USP3-206ENST00000558157 TIMM22Q9Y584 194 aa11.02□□□□□ -0.65
USP3-206ENST00000558157 TCRBV5S1A1TA0A578 114 aa11.01□□□□□ -0.65
USP3-206ENST00000558157 F8VP50 259 aa11.01□□□□□ -0.65
USP3-206ENST00000558157 TSPAN1O60635 241 aa11.01□□□□□ -0.65
USP3-206ENST00000558157 KRT75O95678 551 aa11.01□□□□□ -0.65
USP3-206ENST00000558157 CPNE6O95741 557 aa11.01□□□□□ -0.65
USP3-206ENST00000558157 CSH1P0DML2 217 aa11.01□□□□□ -0.65
USP3-206ENST00000558157 CSH2P0DML3 217 aa11.01□□□□□ -0.65
USP3-206ENST00000558157 CD247P20963 164 aa11.01□□□□□ -0.65
USP3-206ENST00000558157 GNA15P30679 374 aa11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms