RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 PAOXQ6QHF9 649 aa13.05□□□□□ -0.32
LDLR-207ENST00000558013 SDCCAG8Q86SQ7 713 aaPredicted RBP13.05□□□□□ -0.32
LDLR-207ENST00000558013 HEXDCQ8WVB3 486 aa13.05□□□□□ -0.32
LDLR-207ENST00000558013 ELMO2Q96JJ3 720 aa13.05□□□□□ -0.32
LDLR-207ENST00000558013 TBL1YQ9BQ87 522 aa13.05□□□□□ -0.32
LDLR-207ENST00000558013 OSBPL2Q9H1P3 480 aa13.05□□□□□ -0.32
LDLR-207ENST00000558013 COPS7BQ9H9Q2 264 aaPredicted RBP13.05□□□□□ -0.32
LDLR-207ENST00000558013 FAM105AQ9NUU6 356 aa13.05□□□□□ -0.32
LDLR-207ENST00000558013 ACOT9Q9Y305 439 aa13.05□□□□□ -0.32
LDLR-207ENST00000558013 COPG1Q9Y678 874 aaKnown RBP13.05□□□□□ -0.32
LDLR-207ENST00000558013 C17orf102A2RUQ5 167 aa13.05□□□□□ -0.32
LDLR-207ENST00000558013 AHCYL1O43865 530 aa13.05□□□□□ -0.32
LDLR-207ENST00000558013 B3GAT3O94766 335 aa13.05□□□□□ -0.32
LDLR-207ENST00000558013 DDHD2O94830 711 aa13.05□□□□□ -0.32
LDLR-207ENST00000558013 ALDH1A3P47895 512 aa13.05□□□□□ -0.32
LDLR-207ENST00000558013 MAXP61244 160 aa13.05□□□□□ -0.32
LDLR-207ENST00000558013 CACNB2Q08289 660 aaPredicted RBP13.05□□□□□ -0.32
LDLR-207ENST00000558013 NSUN2Q08J23 767 aaKnown RBP eCLIP13.05□□□□□ -0.32
LDLR-207ENST00000558013 CYLC2Q14093 348 aaPredicted RBP13.05□□□□□ -0.32
LDLR-207ENST00000558013 PPP1R3AQ16821 1122 aa13.05□□□□□ -0.32
LDLR-207ENST00000558013 SH2D4BQ5SQS7 431 aa13.05□□□□□ -0.32
LDLR-207ENST00000558013 AGMOQ6ZNB7 445 aa13.05□□□□□ -0.32
LDLR-207ENST00000558013 USP50Q70EL3 339 aaPredicted RBP13.05□□□□□ -0.32
LDLR-207ENST00000558013 PDP2Q9P2J9 529 aa13.05□□□□□ -0.32
LDLR-207ENST00000558013 MAGEB16A2A368 324 aa13.04□□□□□ -0.32
LDLR-207ENST00000558013 ERI2A8K979 691 aaKnown RBP13.04□□□□□ -0.32
LDLR-207ENST00000558013 HAS3O00219 553 aa13.04□□□□□ -0.32
LDLR-207ENST00000558013 MAFKO60675 156 aa13.04□□□□□ -0.32
LDLR-207ENST00000558013 HLA-DQB2P05538 268 aa13.04□□□□□ -0.32
LDLR-207ENST00000558013 THRAP10827 490 aa13.04□□□□□ -0.32
LDLR-207ENST00000558013 SLC12A1Q13621 1099 aa13.04□□□□□ -0.32
LDLR-207ENST00000558013 FLOT2Q14254 428 aa13.04□□□□□ -0.32
LDLR-207ENST00000558013 CSHL1Q14406 222 aa13.04□□□□□ -0.32
LDLR-207ENST00000558013 ZNF423Q2M1K9 1284 aa13.04□□□□□ -0.32
LDLR-207ENST00000558013 SDHAF4Q5VUM1 108 aa13.04□□□□□ -0.32
LDLR-207ENST00000558013 GK5Q6ZS86 529 aa13.04□□□□□ -0.32
LDLR-207ENST00000558013 ACAD11Q709F0 780 aa13.04□□□□□ -0.32
LDLR-207ENST00000558013 C14orf80Q86SX3 495 aa13.04□□□□□ -0.32
LDLR-207ENST00000558013 PCDH20Q8N6Y1 951 aaKnown RBP13.04□□□□□ -0.32
LDLR-207ENST00000558013 KDM1BQ8NB78 822 aa13.04□□□□□ -0.32
LDLR-207ENST00000558013 BHLHE22Q8NFJ8 381 aaPredicted RBP13.04□□□□□ -0.32
LDLR-207ENST00000558013 OR10T2Q8NGX3 314 aa13.04□□□□□ -0.32
LDLR-207ENST00000558013 PGAP3Q96FM1 320 aaPredicted RBP13.04□□□□□ -0.32
LDLR-207ENST00000558013 FAM96AQ9H5X1 160 aa13.04□□□□□ -0.32
LDLR-207ENST00000558013 UBAP1Q9NZ09 502 aa13.04□□□□□ -0.32
LDLR-207ENST00000558013 STK39Q9UEW8 545 aa13.04□□□□□ -0.32
LDLR-207ENST00000558013 PAGE1O75459 146 aa13.04□□□□□ -0.32
LDLR-207ENST00000558013 CABYRO75952 493 aa13.04□□□□□ -0.32
LDLR-207ENST00000558013 OR4Q2P0C623 313 aa13.04□□□□□ -0.32
LDLR-207ENST00000558013 GSTT1P30711 240 aa13.04□□□□□ -0.32
LDLR-207ENST00000558013 IHHQ14623 411 aa13.04□□□□□ -0.32
LDLR-207ENST00000558013 PDK3Q15120 406 aa13.04□□□□□ -0.32
LDLR-207ENST00000558013 CNPY1Q3B7I2 92 aa13.04□□□□□ -0.32
LDLR-207ENST00000558013 SATL1Q86VE3 508 aa13.04□□□□□ -0.32
LDLR-207ENST00000558013 GALNT15Q8N3T1 639 aa13.04□□□□□ -0.32
LDLR-207ENST00000558013 ATPAF2Q8N5M1 289 aa13.04□□□□□ -0.32
LDLR-207ENST00000558013 SMARCD1Q96GM5 515 aa13.04□□□□□ -0.32
LDLR-207ENST00000558013 KLHL32Q96NJ5 620 aa13.04□□□□□ -0.32
LDLR-207ENST00000558013 AGO3Q9H9G7 860 aaKnown RBP13.04□□□□□ -0.32
LDLR-207ENST00000558013 SPON1Q9HCB6 807 aa13.04□□□□□ -0.32
LDLR-207ENST00000558013 GTSE1Q9NYZ3 720 aa13.04□□□□□ -0.32
LDLR-207ENST00000558013 KCNU1A8MYU2 1149 aa13.04□□□□□ -0.32
LDLR-207ENST00000558013 GJB3O75712 270 aa13.04□□□□□ -0.32
LDLR-207ENST00000558013 PPARGP37231 505 aaPredicted RBP13.04□□□□□ -0.32
LDLR-207ENST00000558013 LHX1P48742 406 aa13.04□□□□□ -0.32
LDLR-207ENST00000558013 RAB10P61026 200 aa13.04□□□□□ -0.32
LDLR-207ENST00000558013 PIGGQ5H8A4 983 aa13.04□□□□□ -0.32
LDLR-207ENST00000558013 PCID2Q5JVF3 399 aa13.04□□□□□ -0.32
LDLR-207ENST00000558013 ARTNQ5T4W7 220 aa13.04□□□□□ -0.32
LDLR-207ENST00000558013 METTL21CQ5VZV1 264 aa13.04□□□□□ -0.32
LDLR-207ENST00000558013 DCLRE1AQ6PJP8 1040 aa13.04□□□□□ -0.32
LDLR-207ENST00000558013 PQLC1Q8N2U9 271 aa13.04□□□□□ -0.32
LDLR-207ENST00000558013 GALNT4Q8N4A0 578 aa13.04□□□□□ -0.32
LDLR-207ENST00000558013 JADE3Q92613 823 aa13.04□□□□□ -0.32
LDLR-207ENST00000558013 CASP10Q92851 521 aa13.04□□□□□ -0.32
LDLR-207ENST00000558013 PHF21BQ96EK2 531 aa13.04□□□□□ -0.32
LDLR-207ENST00000558013 FCRL2Q96LA5 508 aaPredicted RBP13.04□□□□□ -0.32
LDLR-207ENST00000558013 OLFM1Q99784 485 aa13.04□□□□□ -0.32
LDLR-207ENST00000558013 POMKQ9H5K3 350 aa13.04□□□□□ -0.32
LDLR-207ENST00000558013 WDR41Q9HAD4 459 aa13.04□□□□□ -0.32
LDLR-207ENST00000558013 PRDM16Q9HAZ2 1276 aa13.04□□□□□ -0.32
LDLR-207ENST00000558013 GLOD4Q9HC38 313 aa13.04□□□□□ -0.32
LDLR-207ENST00000558013 RBM22Q9NW64 420 aaKnown RBP eCLIP13.04□□□□□ -0.322e-7■■■■□ 25.4
LDLR-207ENST00000558013 ZDHHC7Q9NXF8 308 aa13.04□□□□□ -0.32
LDLR-207ENST00000558013 TCAF2A6NFQ2 919 aa13.03□□□□□ -0.32
LDLR-207ENST00000558013 STMN1P16949 149 aa13.03□□□□□ -0.32
LDLR-207ENST00000558013 PRPSAP1Q14558 356 aa13.03□□□□□ -0.32
LDLR-207ENST00000558013 LIN52Q52LA3 116 aa13.03□□□□□ -0.32
LDLR-207ENST00000558013 BNC2Q6ZN30 1099 aaPredicted RBP13.03□□□□□ -0.32
LDLR-207ENST00000558013 TFAP2DQ7Z6R9 452 aa13.03□□□□□ -0.32
LDLR-207ENST00000558013 DCUN1D1Q96GG9 259 aa13.03□□□□□ -0.32
LDLR-207ENST00000558013 PCDHAC1Q9H158 963 aa13.03□□□□□ -0.32
LDLR-207ENST00000558013 ZNF385DQ9H6B1 395 aa13.03□□□□□ -0.32
LDLR-207ENST00000558013 GMPR2Q9P2T1 348 aaKnown RBP13.03□□□□□ -0.32
LDLR-207ENST00000558013 CDYLQ9Y232 598 aa13.03□□□□□ -0.32
LDLR-207ENST00000558013 DTNAQ9Y4J8 743 aa13.03□□□□□ -0.32
LDLR-207ENST00000558013 ATP6AP2A0A1C7CYW4 349 aa13.03□□□□□ -0.32
LDLR-207ENST00000558013 ATP6AP2O75787 350 aa13.03□□□□□ -0.32
LDLR-207ENST00000558013 MYCNP04198 464 aaPredicted RBP13.03□□□□□ -0.32
LDLR-207ENST00000558013 C1QTNF8P60827 252 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms