RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 CCDC153Q494R4 210 aa12.49□□□□□ -0.41
LDLR-205ENST00000557933 LDLRAD1Q5T700 205 aa12.49□□□□□ -0.41
LDLR-205ENST00000557933 GRTP1Q5TC63 336 aa12.49□□□□□ -0.41
LDLR-205ENST00000557933 RWDD4Q6NW29 188 aaKnown RBP12.49□□□□□ -0.41
LDLR-205ENST00000557933 ANKRD13AQ8IZ07 590 aa12.49□□□□□ -0.41
LDLR-205ENST00000557933 HMGCLL1Q8TB92 370 aa12.49□□□□□ -0.41
LDLR-205ENST00000557933 ELMO2Q96JJ3 720 aa12.49□□□□□ -0.41
LDLR-205ENST00000557933 MRPS26Q9BYN8 205 aaKnown RBP12.49□□□□□ -0.41
LDLR-205ENST00000557933 GCOM2Q9BZD3 368 aaPredicted RBP12.49□□□□□ -0.41
LDLR-205ENST00000557933 SPATC1LQ9H0A9 340 aa12.49□□□□□ -0.41
LDLR-205ENST00000557933 OSBPL2Q9H1P3 480 aa12.49□□□□□ -0.41
LDLR-205ENST00000557933 LRRC40Q9H9A6 602 aa12.49□□□□□ -0.41
LDLR-205ENST00000557933 TMCO1Q9UM00 188 aa12.49□□□□□ -0.41
LDLR-205ENST00000557933 LRRC14BA6NHZ5 514 aa12.49□□□□□ -0.41
LDLR-205ENST00000557933 DFFAO00273 331 aa12.49□□□□□ -0.41
LDLR-205ENST00000557933 ACOT8O14734 319 aa12.49□□□□□ -0.41
LDLR-205ENST00000557933 B4GAT1O43505 415 aa12.49□□□□□ -0.41
LDLR-205ENST00000557933 C22orf31O95567 290 aa12.49□□□□□ -0.41
LDLR-205ENST00000557933 ALOX15P16050 662 aaPredicted RBP12.49□□□□□ -0.41
LDLR-205ENST00000557933 TPP2P29144 1249 aaPredicted RBP12.49□□□□□ -0.41
LDLR-205ENST00000557933 CASP2P42575 452 aa12.49□□□□□ -0.41
LDLR-205ENST00000557933 SLC7A2P52569 658 aa12.49□□□□□ -0.41
LDLR-205ENST00000557933 INCA1Q0VD86 236 aa12.49□□□□□ -0.41
LDLR-205ENST00000557933 PLCL1Q15111 1095 aa12.49□□□□□ -0.41
LDLR-205ENST00000557933 GEN1Q17RS7 908 aa12.49□□□□□ -0.41
LDLR-205ENST00000557933 PKDCCQ504Y2 493 aa12.49□□□□□ -0.41
LDLR-205ENST00000557933 CELF3Q5SZQ8 465 aaKnown RBP12.49□□□□□ -0.41
LDLR-205ENST00000557933 RBM20Q5T481 1227 aaKnown RBP12.49□□□□□ -0.41
LDLR-205ENST00000557933 OTUD1Q5VV17 481 aaPredicted RBP12.49□□□□□ -0.41
LDLR-205ENST00000557933 FASTKD5Q7L8L6 764 aaKnown RBP12.49□□□□□ -0.41
LDLR-205ENST00000557933 TMEM151AQ8N4L1 468 aa12.49□□□□□ -0.41
LDLR-205ENST00000557933 FBXL20Q96IG2 436 aa12.49□□□□□ -0.41
LDLR-205ENST00000557933 OSMRQ99650 979 aa12.49□□□□□ -0.41
LDLR-205ENST00000557933 EFCAB1Q9HAE3 211 aa12.49□□□□□ -0.41
LDLR-205ENST00000557933 ZBTB26Q9HCK0 441 aa12.49□□□□□ -0.41
LDLR-205ENST00000557933 CHCHD3Q9NX63 227 aaKnown RBP12.49□□□□□ -0.41
LDLR-205ENST00000557933 DMTF1Q9Y222 760 aa12.49□□□□□ -0.41
LDLR-205ENST00000557933 RAP2CQ9Y3L5 183 aa12.49□□□□□ -0.41
LDLR-205ENST00000557933 NAA20P61599 178 aa12.48□□□□□ -0.41
LDLR-205ENST00000557933 IKBKEQ14164 716 aa12.48□□□□□ -0.41
LDLR-205ENST00000557933 LPIN1Q14693 890 aa12.48□□□□□ -0.41
LDLR-205ENST00000557933 PAN2Q504Q3 1202 aaKnown RBP12.48□□□□□ -0.41
LDLR-205ENST00000557933 LDLRAP1Q5SW96 308 aa12.48□□□□□ -0.41
LDLR-205ENST00000557933 TSTD2Q5T7W7 516 aa12.48□□□□□ -0.41
LDLR-205ENST00000557933 LRRC43Q8N309 656 aa12.48□□□□□ -0.41
LDLR-205ENST00000557933 CYGBQ8WWM9 190 aa12.48□□□□□ -0.41
LDLR-205ENST00000557933 SLCO4A1Q96BD0 722 aa12.48□□□□□ -0.41
LDLR-205ENST00000557933 DTNBP1Q96EV8 351 aa12.48□□□□□ -0.41
LDLR-205ENST00000557933 ZNF419Q96HQ0 510 aaPredicted RBP12.48□□□□□ -0.41
LDLR-205ENST00000557933 BRD8Q9H0E9 1235 aa12.48□□□□□ -0.41
LDLR-205ENST00000557933 CYP3A43Q9HB55 503 aa12.48□□□□□ -0.41
LDLR-205ENST00000557933 FZD10Q9ULW2 581 aa12.48□□□□□ -0.41
LDLR-205ENST00000557933 GTF3C5Q9Y5Q8 519 aaPredicted RBP12.48□□□□□ -0.41
LDLR-205ENST00000557933 IGKV6-21A0A0C4DH24 114 aa12.48□□□□□ -0.41
LDLR-205ENST00000557933 PRSS51A0A1B0GVH4 220 aa12.48□□□□□ -0.41
LDLR-205ENST00000557933 J3QRK9 145 aa12.48□□□□□ -0.41
LDLR-205ENST00000557933 TSPAN1O60635 241 aa12.48□□□□□ -0.41
LDLR-205ENST00000557933 SLC5A3P53794 718 aa12.48□□□□□ -0.41
LDLR-205ENST00000557933 PPIL2Q13356 520 aa12.48□□□□□ -0.41
LDLR-205ENST00000557933 DCTN2Q13561 401 aaKnown RBP12.48□□□□□ -0.41
LDLR-205ENST00000557933 NEDD8Q15843 81 aa12.48□□□□□ -0.41
LDLR-205ENST00000557933 HABP4Q5JVS0 413 aaKnown RBP12.48□□□□□ -0.41
LDLR-205ENST00000557933 LIPMQ5VYY2 423 aa12.48□□□□□ -0.41
LDLR-205ENST00000557933 HMBOX1Q6NT76 420 aa12.48□□□□□ -0.41
LDLR-205ENST00000557933 ZBTB49Q6ZSB9 765 aa12.48□□□□□ -0.41
LDLR-205ENST00000557933 PGAM4Q8N0Y7 254 aa12.48□□□□□ -0.41
LDLR-205ENST00000557933 RP9Q8TA86 221 aaKnown RBP12.48□□□□□ -0.41
LDLR-205ENST00000557933 AFG1LQ8WV93 481 aa12.48□□□□□ -0.41
LDLR-205ENST00000557933 FBXL8Q96CD0 374 aa12.48□□□□□ -0.41
LDLR-205ENST00000557933 TSNARE1Q96NA8 513 aa12.48□□□□□ -0.41
LDLR-205ENST00000557933 MED10Q9BTT4 135 aa12.48□□□□□ -0.41
LDLR-205ENST00000557933 PRMT7Q9NVM4 692 aaPredicted RBP12.48□□□□□ -0.41
LDLR-205ENST00000557933 RSL24D1Q9UHA3 163 aaKnown RBP12.48□□□□□ -0.41
LDLR-205ENST00000557933 PCDHGA7Q9Y5G6 932 aa12.48□□□□□ -0.41
LDLR-205ENST00000557933 YJEFN3A6XGL0 299 aa12.48□□□□□ -0.41
LDLR-205ENST00000557933 FBP2O00757 339 aa12.48□□□□□ -0.41
LDLR-205ENST00000557933 CD247P20963 164 aa12.48□□□□□ -0.41
LDLR-205ENST00000557933 NR2C2P49116 596 aa12.48□□□□□ -0.41
LDLR-205ENST00000557933 TAS2R39P59534 338 aa12.48□□□□□ -0.41
LDLR-205ENST00000557933 VGLL4Q14135 290 aa12.48□□□□□ -0.41
LDLR-205ENST00000557933 OGFOD2Q6N063 350 aa12.48□□□□□ -0.41
LDLR-205ENST00000557933 UTS2BQ765I0 119 aa12.48□□□□□ -0.41
LDLR-205ENST00000557933 GPRIN1Q7Z2K8 1008 aa12.48□□□□□ -0.41
LDLR-205ENST00000557933 ERO1BQ86YB8 467 aa12.48□□□□□ -0.41
LDLR-205ENST00000557933 SPPL2CQ8IUH8 684 aa12.48□□□□□ -0.41
LDLR-205ENST00000557933 CBR4Q8N4T8 237 aa12.48□□□□□ -0.41
LDLR-205ENST00000557933 DCBLD1Q8N8Z6 715 aa12.48□□□□□ -0.41
LDLR-205ENST00000557933 NUDT8Q8WV74 236 aa12.48□□□□□ -0.41
LDLR-205ENST00000557933 MUC3BQ9H195 1237 aa12.48□□□□□ -0.41
LDLR-205ENST00000557933 RAB26Q9ULW5 256 aa12.48□□□□□ -0.41
LDLR-205ENST00000557933 USP22Q9UPT9 525 aa12.48□□□□□ -0.41
LDLR-205ENST00000557933 A0A0G2JLL6 359 aaPredicted RBP12.47□□□□□ -0.41
LDLR-205ENST00000557933 ADM5C9JUS6 153 aa12.47□□□□□ -0.41
LDLR-205ENST00000557933 BCAS2O75934 225 aaPredicted RBP12.47□□□□□ -0.41
LDLR-205ENST00000557933 SLC4A1P02730 911 aa12.47□□□□□ -0.41
LDLR-205ENST00000557933 USP17L7P0C7H9 530 aa12.47□□□□□ -0.41
LDLR-205ENST00000557933 APLP1P51693 650 aa12.47□□□□□ -0.41
LDLR-205ENST00000557933 TPI1P60174 286 aa12.47□□□□□ -0.41
LDLR-205ENST00000557933 SOX4Q06945 474 aaPredicted RBP12.47□□□□□ -0.41
LDLR-205ENST00000557933 ATP1A4Q13733 1029 aa12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms