RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 CDK4P11802 303 aa16.49■□□□□ 0.23
SHMT2-232ENST00000557487 GJA9P57773 515 aa16.49■□□□□ 0.23
SHMT2-232ENST00000557487 TPI1P60174 286 aa16.49■□□□□ 0.23
SHMT2-232ENST00000557487 RAB10P61026 200 aa16.49■□□□□ 0.23
SHMT2-232ENST00000557487 SULT2A1Q06520 285 aa16.49■□□□□ 0.23
SHMT2-232ENST00000557487 ARHGAP1Q07960 439 aa16.49■□□□□ 0.23
SHMT2-232ENST00000557487 ADIGQ0VDE8 80 aa16.49■□□□□ 0.23
SHMT2-232ENST00000557487 MYBPC3Q14896 1274 aa16.49■□□□□ 0.23
SHMT2-232ENST00000557487 CERCAMQ5T4B2 595 aa16.49■□□□□ 0.23
SHMT2-232ENST00000557487 TRIML2Q8N7C3 387 aa16.49■□□□□ 0.23
SHMT2-232ENST00000557487 APPL2Q8NEU8 664 aa16.49■□□□□ 0.23
SHMT2-232ENST00000557487 PBXIP1Q96AQ6 731 aa16.49■□□□□ 0.23
SHMT2-232ENST00000557487 ZMAT2Q96NC0 199 aaKnown RBP16.49■□□□□ 0.23
SHMT2-232ENST00000557487 CCT7Q99832 543 aa16.49■□□□□ 0.23
SHMT2-232ENST00000557487 FTHL17Q9BXU8 183 aa16.49■□□□□ 0.23
SHMT2-232ENST00000557487 EML4Q9HC35 981 aaKnown RBP16.49■□□□□ 0.23
SHMT2-232ENST00000557487 CHCHD3Q9NX63 227 aaKnown RBP16.49■□□□□ 0.23
SHMT2-232ENST00000557487 TUBGCP4Q9UGJ1 667 aa16.49■□□□□ 0.23
SHMT2-232ENST00000557487 MYRFQ9Y2G1 1151 aa16.49■□□□□ 0.23
SHMT2-232ENST00000557487 PCDHGA7Q9Y5G6 932 aa16.49■□□□□ 0.23
SHMT2-232ENST00000557487 MYO18AQ92614 2054 aaKnown RBP16.49■□□□□ 0.23
SHMT2-232ENST00000557487 HEATR9A2RTY3 570 aa16.49■□□□□ 0.23
SHMT2-232ENST00000557487 SDHDO14521 159 aa16.49■□□□□ 0.23
SHMT2-232ENST00000557487 DLX3O60479 287 aa16.49■□□□□ 0.23
SHMT2-232ENST00000557487 AMHP03971 560 aa16.49■□□□□ 0.23
SHMT2-232ENST00000557487 PYGLP06737 847 aa16.49■□□□□ 0.23
SHMT2-232ENST00000557487 CD68P34810 354 aaPredicted RBP16.49■□□□□ 0.23
SHMT2-232ENST00000557487 INHBCP55103 352 aa16.49■□□□□ 0.23
SHMT2-232ENST00000557487 COG7P83436 770 aa16.49■□□□□ 0.23
SHMT2-232ENST00000557487 ITGA7Q13683 1181 aa16.49■□□□□ 0.23
SHMT2-232ENST00000557487 VGLL4Q14135 290 aa16.49■□□□□ 0.23
SHMT2-232ENST00000557487 IKBKEQ14164 716 aa16.49■□□□□ 0.23
SHMT2-232ENST00000557487 ARL13BQ3SXY8 428 aa16.49■□□□□ 0.23
SHMT2-232ENST00000557487 PCID2Q5JVF3 399 aa16.49■□□□□ 0.23
SHMT2-232ENST00000557487 SPRYD7Q5W111 196 aa16.49■□□□□ 0.23
SHMT2-232ENST00000557487 MAMDC4Q6UXC1 1216 aa16.49■□□□□ 0.23
SHMT2-232ENST00000557487 ALKAL1Q6UXT8 129 aa16.49■□□□□ 0.23
SHMT2-232ENST00000557487 PACRGLQ8N7B6 248 aa16.49■□□□□ 0.23
SHMT2-232ENST00000557487 GAB3Q8WWW8 586 aa16.49■□□□□ 0.23
SHMT2-232ENST00000557487 TMA16Q96EY4 203 aaKnown RBP16.49■□□□□ 0.23
SHMT2-232ENST00000557487 TEKT5Q96M29 485 aa16.49■□□□□ 0.23
SHMT2-232ENST00000557487 CHRAC1Q9NRG0 131 aa16.49■□□□□ 0.23
SHMT2-232ENST00000557487 ADA2Q9NZK5 511 aa16.49■□□□□ 0.23
SHMT2-232ENST00000557487 SCN1AP35498 2009 aa16.48■□□□□ 0.23
SHMT2-232ENST00000557487 TCRBV3S1A0A5B6 114 aa16.48■□□□□ 0.23
SHMT2-232ENST00000557487 DYTNA2CJ06 578 aa16.48■□□□□ 0.23
SHMT2-232ENST00000557487 H3BNH8 94 aa16.48■□□□□ 0.23
SHMT2-232ENST00000557487 ZNF701M0R085 212 aaPredicted RBP16.48■□□□□ 0.23
SHMT2-232ENST00000557487 TRIM24O15164 1050 aa16.48■□□□□ 0.23
SHMT2-232ENST00000557487 HNRNPRO43390 633 aaKnown RBP16.48■□□□□ 0.23
SHMT2-232ENST00000557487 USP12O75317 370 aa16.48■□□□□ 0.23
SHMT2-232ENST00000557487 PGK2P07205 417 aa16.48■□□□□ 0.23
SHMT2-232ENST00000557487 PDGFRBP09619 1106 aa16.48■□□□□ 0.23
SHMT2-232ENST00000557487 STMN1P16949 149 aa16.48■□□□□ 0.23
SHMT2-232ENST00000557487 ATP5F1P24539 256 aaPredicted RBP16.48■□□□□ 0.23
SHMT2-232ENST00000557487 SLC5A2P31639 672 aa16.48■□□□□ 0.23
SHMT2-232ENST00000557487 GTF2A2P52657 109 aa16.48■□□□□ 0.23
SHMT2-232ENST00000557487 GALNT1Q10472 559 aaPredicted RBP16.48■□□□□ 0.23
SHMT2-232ENST00000557487 SV2CQ496J9 727 aa16.48■□□□□ 0.23
SHMT2-232ENST00000557487 GLRA4Q5JXX5 417 aa16.48■□□□□ 0.23
SHMT2-232ENST00000557487 SAMD4BQ5PRF9 694 aaKnown RBP16.48■□□□□ 0.23
SHMT2-232ENST00000557487 IL23RQ5VWK5 629 aa16.48■□□□□ 0.23
SHMT2-232ENST00000557487 CENPLQ8N0S6 344 aaPredicted RBP16.48■□□□□ 0.23
SHMT2-232ENST00000557487 SIX6OS1Q8N1H7 587 aa16.48■□□□□ 0.23
SHMT2-232ENST00000557487 LRRC43Q8N309 656 aa16.48■□□□□ 0.23
SHMT2-232ENST00000557487 PPTC7Q8NI37 304 aa16.48■□□□□ 0.23
SHMT2-232ENST00000557487 KCTD4Q8WVF5 259 aa16.48■□□□□ 0.23
SHMT2-232ENST00000557487 EMID1Q96A84 441 aaPredicted RBP16.48■□□□□ 0.23
SHMT2-232ENST00000557487 PGAP3Q96FM1 320 aaPredicted RBP16.48■□□□□ 0.23
SHMT2-232ENST00000557487 TSGA13Q96PP4 275 aa16.48■□□□□ 0.23
SHMT2-232ENST00000557487 SPAG4Q9NPE6 437 aa16.48■□□□□ 0.23
SHMT2-232ENST00000557487 SNTG2Q9NY99 539 aa16.48■□□□□ 0.23
SHMT2-232ENST00000557487 XPR1Q9UBH6 696 aa16.48■□□□□ 0.23
SHMT2-232ENST00000557487 PTBP2Q9UKA9 531 aaKnown RBP16.48■□□□□ 0.23
SHMT2-232ENST00000557487 G3BP2Q9UN86 482 aaKnown RBP16.48■□□□□ 0.23
SHMT2-232ENST00000557487 AAR2Q9Y312 384 aaKnown RBP16.48■□□□□ 0.23
SHMT2-232ENST00000557487 CSADQ9Y600 493 aa16.48■□□□□ 0.23
SHMT2-232ENST00000557487 CACNG3O60359 315 aa16.47■□□□□ 0.23
SHMT2-232ENST00000557487 PFDN1O60925 122 aa16.47■□□□□ 0.23
SHMT2-232ENST00000557487 BMP10O95393 424 aa16.47■□□□□ 0.23
SHMT2-232ENST00000557487 HSPA8P11142 646 aaKnown RBP16.47■□□□□ 0.23
SHMT2-232ENST00000557487 NPR3P17342 541 aa16.47■□□□□ 0.23
SHMT2-232ENST00000557487 NFKB1P19838 968 aa16.47■□□□□ 0.23
SHMT2-232ENST00000557487 WARSP23381 471 aaKnown RBP16.47■□□□□ 0.23
SHMT2-232ENST00000557487 NMBRP28336 390 aa16.47■□□□□ 0.23
SHMT2-232ENST00000557487 TAF6P49848 677 aa16.47■□□□□ 0.23
SHMT2-232ENST00000557487 ATP4BP51164 291 aa16.47■□□□□ 0.23
SHMT2-232ENST00000557487 SMAD1Q15797 465 aaKnown RBP16.47■□□□□ 0.23
SHMT2-232ENST00000557487 TMEM198Q66K66 360 aa16.47■□□□□ 0.23
SHMT2-232ENST00000557487 FAM45BPQ6NSW5 357 aa16.47■□□□□ 0.23
SHMT2-232ENST00000557487 PKN3Q6P5Z2 889 aa16.47■□□□□ 0.23
SHMT2-232ENST00000557487 DHRS4L2Q6PKH6 230 aa16.47■□□□□ 0.23
SHMT2-232ENST00000557487 TOP6BLQ8N6T0 577 aa16.47■□□□□ 0.23
SHMT2-232ENST00000557487 FAM45AQ8TCE6 357 aa16.47■□□□□ 0.23
SHMT2-232ENST00000557487 GPR78Q96P69 363 aa16.47■□□□□ 0.23
SHMT2-232ENST00000557487 ZIC5Q96T25 663 aa16.47■□□□□ 0.23
SHMT2-232ENST00000557487 PPP1R16BQ96T49 567 aa16.47■□□□□ 0.23
SHMT2-232ENST00000557487 NPAS2Q99743 824 aa16.47■□□□□ 0.23
SHMT2-232ENST00000557487 APBA2Q99767 749 aa16.47■□□□□ 0.23
SHMT2-232ENST00000557487 SLC25A23Q9BV35 468 aa16.47■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms