RNA–Protein interactions for RNA: ENST00000553128.5

VPS29-211, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 449 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-211ENST00000553128 CCKBRP32239 447 aa13.16□□□□□ -0.3
VPS29-211ENST00000553128 IGFALSP35858 605 aa13.16□□□□□ -0.3
VPS29-211ENST00000553128 CASRP41180 1078 aa13.16□□□□□ -0.3
VPS29-211ENST00000553128 ABL2P42684 1182 aa13.16□□□□□ -0.3
VPS29-211ENST00000553128 MAPK10P53779 464 aa13.16□□□□□ -0.3
VPS29-211ENST00000553128 POLE2P56282 527 aa13.16□□□□□ -0.3
VPS29-211ENST00000553128 YWHAZP63104 245 aaKnown RBP13.16□□□□□ -0.3
VPS29-211ENST00000553128 DPYDQ12882 1025 aa13.16□□□□□ -0.3
VPS29-211ENST00000553128 KCNAB2Q13303 367 aa13.16□□□□□ -0.3
VPS29-211ENST00000553128 SGCGQ13326 291 aa13.16□□□□□ -0.3
VPS29-211ENST00000553128 EDRF1Q3B7T1 1238 aa13.16□□□□□ -0.3
VPS29-211ENST00000553128 FAXCQ5TGI0 409 aa13.16□□□□□ -0.3
VPS29-211ENST00000553128 TMPRSS9Q7Z410 1059 aa13.16□□□□□ -0.3
VPS29-211ENST00000553128 FAM26EQ8N5C1 309 aa13.16□□□□□ -0.3
VPS29-211ENST00000553128 ARL10Q8N8L6 244 aa13.16□□□□□ -0.3
VPS29-211ENST00000553128 ZSCAN1Q8NBB4 408 aa13.16□□□□□ -0.3
VPS29-211ENST00000553128 INTS4Q96HW7 963 aaKnown RBP13.16□□□□□ -0.3
VPS29-211ENST00000553128 CCDC114Q96M63 670 aa13.16□□□□□ -0.3
VPS29-211ENST00000553128 SLC12A9Q9BXP2 914 aa13.16□□□□□ -0.3
VPS29-211ENST00000553128 LRRN3Q9H3W5 708 aa13.16□□□□□ -0.3
VPS29-211ENST00000553128 FAM204AQ9H8W3 233 aa13.16□□□□□ -0.3
VPS29-211ENST00000553128 DDIT4Q9NX09 232 aa13.16□□□□□ -0.3
VPS29-211ENST00000553128 SLC12A6Q9UHW9 1150 aa13.16□□□□□ -0.3
VPS29-211ENST00000553128 PLAAQ9Y263 795 aa13.16□□□□□ -0.3
VPS29-211ENST00000553128 SNX10Q9Y5X0 201 aa13.16□□□□□ -0.3
VPS29-211ENST00000553128 ACTL7AQ9Y615 435 aa13.16□□□□□ -0.3
VPS29-211ENST00000553128 I6L893 689 aaPredicted RBP13.15□□□□□ -0.3
VPS29-211ENST00000553128 SART1O43290 800 aaKnown RBP13.15□□□□□ -0.3
VPS29-211ENST00000553128 AP1G1O43747 822 aa13.15□□□□□ -0.3
VPS29-211ENST00000553128 CLDN11O75508 207 aa13.15□□□□□ -0.3
VPS29-211ENST00000553128 RHOCP08134 193 aa13.15□□□□□ -0.3
VPS29-211ENST00000553128 L1CAMP32004 1257 aa13.15□□□□□ -0.3
VPS29-211ENST00000553128 GKP32189 559 aa13.15□□□□□ -0.3
VPS29-211ENST00000553128 CCR1P32246 355 aa13.15□□□□□ -0.3
VPS29-211ENST00000553128 NOS2P35228 1153 aa13.15□□□□□ -0.3
VPS29-211ENST00000553128 KRT83P78385 493 aa13.15□□□□□ -0.3
VPS29-211ENST00000553128 STILQ15468 1287 aa13.15□□□□□ -0.3
VPS29-211ENST00000553128 BORAQ6PGQ7 559 aa13.15□□□□□ -0.3
VPS29-211ENST00000553128 SFTPA2Q8IWL1 248 aa13.15□□□□□ -0.3
VPS29-211ENST00000553128 DEFB106AQ8N104 65 aa13.15□□□□□ -0.3
VPS29-211ENST00000553128 Q8N9G6 341 aaPredicted RBP13.15□□□□□ -0.3
VPS29-211ENST00000553128 SLC35C1Q96A29 364 aa13.15□□□□□ -0.3
VPS29-211ENST00000553128 VOPP1Q96AW1 172 aa13.15□□□□□ -0.3
VPS29-211ENST00000553128 CENPTQ96BT3 561 aa13.15□□□□□ -0.3
VPS29-211ENST00000553128 PPP1R16AQ96I34 528 aa13.15□□□□□ -0.3
VPS29-211ENST00000553128 PPP1R9BQ96SB3 815 aa13.15□□□□□ -0.3
VPS29-211ENST00000553128 C2orf49Q9BVC5 232 aaPredicted RBP13.15□□□□□ -0.3
VPS29-211ENST00000553128 SLC4A5Q9BY07 1137 aa13.15□□□□□ -0.3
VPS29-211ENST00000553128 SLC13A1Q9BZW2 595 aa13.15□□□□□ -0.3
VPS29-211ENST00000553128 SIK2Q9H0K1 926 aa13.15□□□□□ -0.3
VPS29-211ENST00000553128 ADNPQ9H2P0 1102 aa13.15□□□□□ -0.3
VPS29-211ENST00000553128 ANLNQ9NQW6 1124 aa13.15□□□□□ -0.3
VPS29-211ENST00000553128 MBNL1Q9NR56 388 aaKnown RBP13.15□□□□□ -0.3
VPS29-211ENST00000553128 KCNK4Q9NYG8 393 aa13.15□□□□□ -0.3
VPS29-211ENST00000553128 TMX2-CTNND1H3BSU7 103 aa13.14□□□□□ -0.31
VPS29-211ENST00000553128 CETN3O15182 167 aa13.14□□□□□ -0.31
VPS29-211ENST00000553128 PAGE1O75459 146 aa13.14□□□□□ -0.31
VPS29-211ENST00000553128 GRAP2O75791 330 aa13.14□□□□□ -0.31
VPS29-211ENST00000553128 ARSDP51689 593 aa13.14□□□□□ -0.31
VPS29-211ENST00000553128 THOP1P52888 689 aa13.14□□□□□ -0.31
VPS29-211ENST00000553128 CDH4P55283 916 aa13.14□□□□□ -0.31
VPS29-211ENST00000553128 ZFP36L1Q07352 338 aaKnown RBP13.14□□□□□ -0.31
VPS29-211ENST00000553128 C5orf22Q49AR2 442 aa13.14□□□□□ -0.31
VPS29-211ENST00000553128 LRRC73Q5JTD7 316 aa13.14□□□□□ -0.31
VPS29-211ENST00000553128 KCTD16Q68DU8 428 aa13.14□□□□□ -0.31
VPS29-211ENST00000553128 RRAGAQ7L523 313 aa13.14□□□□□ -0.31
VPS29-211ENST00000553128 VPS36Q86VN1 386 aa13.14□□□□□ -0.31
VPS29-211ENST00000553128 ARHGEF19Q8IW93 802 aa13.14□□□□□ -0.31
VPS29-211ENST00000553128 PPM1KQ8N3J5 372 aa13.14□□□□□ -0.31
VPS29-211ENST00000553128 OR7D4Q8NG98 312 aa13.14□□□□□ -0.31
VPS29-211ENST00000553128 PMEPA1Q969W9 287 aa13.14□□□□□ -0.31
VPS29-211ENST00000553128 TBATAQ96M53 351 aa13.14□□□□□ -0.31
VPS29-211ENST00000553128 TMEM74Q96NL1 305 aa13.14□□□□□ -0.31
VPS29-211ENST00000553128 ACP6Q9NPH0 428 aa13.14□□□□□ -0.31
VPS29-211ENST00000553128 ZNF71Q9NQZ8 489 aaPredicted RBP13.14□□□□□ -0.31
VPS29-211ENST00000553128 HPSEQ9Y251 543 aa13.14□□□□□ -0.31
VPS29-211ENST00000553128 PCDHB11Q9Y5F2 797 aa13.14□□□□□ -0.31
VPS29-211ENST00000553128 A0A1W2PQ27 194 aa13.13□□□□□ -0.31
VPS29-211ENST00000553128 A0A1W2PQ64 194 aa13.13□□□□□ -0.31
VPS29-211ENST00000553128 A0A1W2PQC6 194 aa13.13□□□□□ -0.31
VPS29-211ENST00000553128 ADCY5O95622 1261 aa13.13□□□□□ -0.31
VPS29-211ENST00000553128 MYL1P05976 194 aa13.13□□□□□ -0.31
VPS29-211ENST00000553128 SLC2A3P11169 496 aa13.13□□□□□ -0.31
VPS29-211ENST00000553128 EIF4A3P38919 411 aaKnown RBP13.13□□□□□ -0.31
VPS29-211ENST00000553128 ACADSBP45954 432 aa13.13□□□□□ -0.31
VPS29-211ENST00000553128 DNA2P51530 1060 aa13.13□□□□□ -0.31
VPS29-211ENST00000553128 CLCN6P51797 869 aa13.13□□□□□ -0.31
VPS29-211ENST00000553128 CCNHP51946 323 aaPredicted RBP13.13□□□□□ -0.31
VPS29-211ENST00000553128 PMS1P54277 932 aaKnown RBP13.13□□□□□ -0.31
VPS29-211ENST00000553128 PPARDQ03181 441 aa13.13□□□□□ -0.31
VPS29-211ENST00000553128 NME3Q13232 169 aa13.13□□□□□ -0.31
VPS29-211ENST00000553128 PTK2BQ14289 1009 aa13.13□□□□□ -0.31
VPS29-211ENST00000553128 C16orf72Q14CZ0 275 aa13.13□□□□□ -0.31
VPS29-211ENST00000553128 NCAPHQ15003 741 aa13.13□□□□□ -0.31
VPS29-211ENST00000553128 ARTNQ5T4W7 220 aa13.13□□□□□ -0.31
VPS29-211ENST00000553128 MACC1Q6ZN28 852 aa13.13□□□□□ -0.31
VPS29-211ENST00000553128 TFAP2DQ7Z6R9 452 aa13.13□□□□□ -0.31
VPS29-211ENST00000553128 TMEM110Q86TL2 294 aa13.13□□□□□ -0.31
VPS29-211ENST00000553128 CCNJLQ8IV13 435 aa13.13□□□□□ -0.31
VPS29-211ENST00000553128 ZNF683Q8IZ20 524 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms