RNA–Protein interactions for RNA: ENST00000552828.5

CKAP4-202, Transcript of cytoskeleton associated protein 4, humanhuman

TSL 3

Gene CKAP4, Length 831 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP4-202ENST00000552828 LEFTY1O75610 366 aa12.08□□□□□ -0.48
CKAP4-202ENST00000552828 PCDH8O95206 1070 aa12.08□□□□□ -0.48
CKAP4-202ENST00000552828 CCDC172P0C7W6 258 aa12.08□□□□□ -0.48
CKAP4-202ENST00000552828 ITGB7P26010 798 aa12.08□□□□□ -0.48
CKAP4-202ENST00000552828 CDH5P33151 784 aaPredicted RBP12.08□□□□□ -0.48
CKAP4-202ENST00000552828 DUSP3P51452 185 aaPredicted RBP12.08□□□□□ -0.48
CKAP4-202ENST00000552828 PCBP4P57723 403 aaKnown RBP12.08□□□□□ -0.48
CKAP4-202ENST00000552828 CLDN2P57739 230 aa12.08□□□□□ -0.48
CKAP4-202ENST00000552828 ERVPABLB-1P60509 514 aa12.08□□□□□ -0.48
CKAP4-202ENST00000552828 HNRNPKP61978 463 aaKnown RBP eCLIP12.08□□□□□ -0.48
CKAP4-202ENST00000552828 RPS21P63220 83 aaKnown RBP12.08□□□□□ -0.48
CKAP4-202ENST00000552828 FGL2Q14314 439 aa12.08□□□□□ -0.48
CKAP4-202ENST00000552828 FZD2Q14332 565 aa12.08□□□□□ -0.48
CKAP4-202ENST00000552828 SLC25A52Q3SY17 297 aa12.08□□□□□ -0.48
CKAP4-202ENST00000552828 KIAA1161Q6NSJ0 714 aa12.08□□□□□ -0.48
CKAP4-202ENST00000552828 C22orf39Q6P5X5 142 aa12.08□□□□□ -0.48
CKAP4-202ENST00000552828 IGF2-ASQ6U949 168 aa12.08□□□□□ -0.48
CKAP4-202ENST00000552828 LRRC31Q6UY01 552 aa12.08□□□□□ -0.48
CKAP4-202ENST00000552828 LINGO4Q6UY18 593 aa12.08□□□□□ -0.48
CKAP4-202ENST00000552828 KYAT3Q6YP21 454 aaKnown RBP12.08□□□□□ -0.48
CKAP4-202ENST00000552828 TMC6Q7Z403 805 aa12.08□□□□□ -0.48
CKAP4-202ENST00000552828 BNIPLQ7Z465 357 aa12.08□□□□□ -0.48
CKAP4-202ENST00000552828 NOP9Q86U38 636 aaKnown RBP12.08□□□□□ -0.48
CKAP4-202ENST00000552828 ZSCAN30Q86W11 494 aa12.08□□□□□ -0.48
CKAP4-202ENST00000552828 ZNF677Q86XU0 584 aa12.08□□□□□ -0.48
CKAP4-202ENST00000552828 TMEM35BQ8NCS4 154 aa12.08□□□□□ -0.48
CKAP4-202ENST00000552828 WBP1Q96G27 269 aa12.08□□□□□ -0.48
CKAP4-202ENST00000552828 PPP1R16AQ96I34 528 aa12.08□□□□□ -0.48
CKAP4-202ENST00000552828 LENG8Q96PV6 779 aaPredicted RBP12.08□□□□□ -0.48
CKAP4-202ENST00000552828 MYOCQ99972 504 aa12.08□□□□□ -0.48
CKAP4-202ENST00000552828 SLC17A9Q9BYT1 436 aa12.08□□□□□ -0.48
CKAP4-202ENST00000552828 EDEM3Q9BZQ6 932 aa12.08□□□□□ -0.48
CKAP4-202ENST00000552828 SYNCQ9H7C4 482 aa12.08□□□□□ -0.48
CKAP4-202ENST00000552828 CAAP1Q9H8G2 361 aa12.08□□□□□ -0.48
CKAP4-202ENST00000552828 POLR1BQ9H9Y6 1135 aa12.08□□□□□ -0.48
CKAP4-202ENST00000552828 IFNKQ9P0W0 207 aa12.08□□□□□ -0.48
CKAP4-202ENST00000552828 STAP1Q9ULZ2 295 aa12.08□□□□□ -0.48
CKAP4-202ENST00000552828 MYO6Q9UM54 1294 aa12.08□□□□□ -0.48
CKAP4-202ENST00000552828 SSUH2Q9Y2M2 353 aa12.08□□□□□ -0.48
CKAP4-202ENST00000552828 CSNK1G3Q9Y6M4 447 aa12.08□□□□□ -0.48
CKAP4-202ENST00000552828 CAPN8A6NHC0 703 aa12.07□□□□□ -0.48
CKAP4-202ENST00000552828 ERVH48-1M5A8F1 160 aa12.07□□□□□ -0.48
CKAP4-202ENST00000552828 CBFA2T2O43439 604 aa12.07□□□□□ -0.48
CKAP4-202ENST00000552828 CSF2P04141 144 aa12.07□□□□□ -0.48
CKAP4-202ENST00000552828 MPOP05164 745 aa12.07□□□□□ -0.48
CKAP4-202ENST00000552828 ADRB3P13945 408 aa12.07□□□□□ -0.48
CKAP4-202ENST00000552828 NME1P15531 152 aaKnown RBP12.07□□□□□ -0.48
CKAP4-202ENST00000552828 OR1E1P30953 314 aa12.07□□□□□ -0.48
CKAP4-202ENST00000552828 L1CAMP32004 1257 aa12.07□□□□□ -0.48
CKAP4-202ENST00000552828 RECQLP46063 649 aaPredicted RBP12.07□□□□□ -0.48
CKAP4-202ENST00000552828 SERPINH1P50454 418 aaKnown RBP12.07□□□□□ -0.48
CKAP4-202ENST00000552828 NEK3P51956 506 aa12.07□□□□□ -0.48
CKAP4-202ENST00000552828 UCNP55089 124 aa12.07□□□□□ -0.48
CKAP4-202ENST00000552828 CXADRP78310 365 aa12.07□□□□□ -0.48
CKAP4-202ENST00000552828 TAF3Q5VWG9 929 aa12.07□□□□□ -0.48
CKAP4-202ENST00000552828 RETSATQ6NUM9 610 aa12.07□□□□□ -0.48
CKAP4-202ENST00000552828 PLPP6Q8IY26 295 aa12.07□□□□□ -0.48
CKAP4-202ENST00000552828 PCDH20Q8N6Y1 951 aaKnown RBP12.07□□□□□ -0.48
CKAP4-202ENST00000552828 ZNF548Q8NEK5 533 aaPredicted RBP12.07□□□□□ -0.48
CKAP4-202ENST00000552828 GRIN3AQ8TCU5 1115 aa12.07□□□□□ -0.48
CKAP4-202ENST00000552828 EPS8L1Q8TE68 723 aa12.07□□□□□ -0.48
CKAP4-202ENST00000552828 SNRNP27Q8WVK2 155 aaKnown RBP12.07□□□□□ -0.48
CKAP4-202ENST00000552828 ASB12Q8WXK4 309 aa12.07□□□□□ -0.48
CKAP4-202ENST00000552828 GRAMD1AQ96CP6 724 aa12.07□□□□□ -0.48
CKAP4-202ENST00000552828 FEM1CQ96JP0 617 aa12.07□□□□□ -0.48
CKAP4-202ENST00000552828 HAPLN3Q96S86 360 aa12.07□□□□□ -0.48
CKAP4-202ENST00000552828 LGMNQ99538 433 aa12.07□□□□□ -0.48
CKAP4-202ENST00000552828 C1QTNF2Q9BXJ5 285 aa12.07□□□□□ -0.48
CKAP4-202ENST00000552828 TNKS2Q9H2K2 1166 aa12.07□□□□□ -0.48
CKAP4-202ENST00000552828 ASCL3Q9NQ33 180 aa12.07□□□□□ -0.48
CKAP4-202ENST00000552828 EVA1BQ9NVM1 165 aa12.07□□□□□ -0.48
CKAP4-202ENST00000552828 DNAJC28Q9NX36 388 aa12.07□□□□□ -0.48
CKAP4-202ENST00000552828 NCKIPSDQ9NZQ3 722 aa12.07□□□□□ -0.48
CKAP4-202ENST00000552828 MPP6Q9NZW5 540 aa12.07□□□□□ -0.48
CKAP4-202ENST00000552828 FADS3Q9Y5Q0 445 aa12.07□□□□□ -0.48
CKAP4-202ENST00000552828 SNX10Q9Y5X0 201 aa12.07□□□□□ -0.48
CKAP4-202ENST00000552828 MYLKQ15746 1914 aa12.07□□□□□ -0.48
CKAP4-202ENST00000552828 POM121BA6NF01 834 aa12.06□□□□□ -0.48
CKAP4-202ENST00000552828 RAD51BO15315 384 aa12.06□□□□□ -0.48
CKAP4-202ENST00000552828 USP12O75317 370 aa12.06□□□□□ -0.48
CKAP4-202ENST00000552828 CSO75390 466 aaKnown RBP12.06□□□□□ -0.48
CKAP4-202ENST00000552828 LSM8O95777 96 aaKnown RBP12.06□□□□□ -0.48
CKAP4-202ENST00000552828 PAK4O96013 591 aaPredicted RBP12.06□□□□□ -0.48
CKAP4-202ENST00000552828 MYF5P13349 255 aa12.06□□□□□ -0.48
CKAP4-202ENST00000552828 PLA2G2AP14555 144 aa12.06□□□□□ -0.48
CKAP4-202ENST00000552828 FERP16591 822 aa12.06□□□□□ -0.48
CKAP4-202ENST00000552828 PBX1P40424 430 aa12.06□□□□□ -0.48
CKAP4-202ENST00000552828 RABIFP47224 123 aa12.06□□□□□ -0.48
CKAP4-202ENST00000552828 SULT1E1P49888 294 aa12.06□□□□□ -0.48
CKAP4-202ENST00000552828 RNASE9P60153 205 aaKnown RBP12.06□□□□□ -0.48
CKAP4-202ENST00000552828 GABREP78334 506 aa12.06□□□□□ -0.48
CKAP4-202ENST00000552828 CDR2Q01850 454 aa12.06□□□□□ -0.48
CKAP4-202ENST00000552828 DEUP1Q05D60 604 aa12.06□□□□□ -0.48
CKAP4-202ENST00000552828 ZNF542PQ5EBM4 170 aa12.06□□□□□ -0.48
CKAP4-202ENST00000552828 CARD16Q5EG05 197 aa12.06□□□□□ -0.48
CKAP4-202ENST00000552828 FIGNQ5HY92 759 aa12.06□□□□□ -0.48
CKAP4-202ENST00000552828 ZCCHC8Q6NZY4 707 aaKnown RBP12.06□□□□□ -0.48
CKAP4-202ENST00000552828 ARCQ7LC44 396 aa12.06□□□□□ -0.48
CKAP4-202ENST00000552828 PTAR1Q7Z6K3 402 aaPredicted RBP12.06□□□□□ -0.48
CKAP4-202ENST00000552828 TFAP2DQ7Z6R9 452 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms