RNA–Protein interactions for RNA: ENST00000545856.5

PRPF40A-212, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,358 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-212ENST00000545856 FAM153AQ9UHL3 310 aa16.25■□□□□ 0.19
PRPF40A-212ENST00000545856 COL6A3P12111 3177 aa16.24■□□□□ 0.19
PRPF40A-212ENST00000545856 E7EVH7 732 aa16.24■□□□□ 0.19
PRPF40A-212ENST00000545856 INSIG1O15503 277 aa16.24■□□□□ 0.19
PRPF40A-212ENST00000545856 CTIFO43310 598 aaKnown RBP16.24■□□□□ 0.19
PRPF40A-212ENST00000545856 NARSO43776 548 aaKnown RBP16.24■□□□□ 0.19
PRPF40A-212ENST00000545856 SUN1O94901 812 aa16.24■□□□□ 0.19
PRPF40A-212ENST00000545856 C7P10643 843 aa16.24■□□□□ 0.19
PRPF40A-212ENST00000545856 MLNP12872 115 aa16.24■□□□□ 0.19
PRPF40A-212ENST00000545856 NFKB1P19838 968 aa16.24■□□□□ 0.19
PRPF40A-212ENST00000545856 IVDP26440 423 aa16.24■□□□□ 0.19
PRPF40A-212ENST00000545856 CD68P34810 354 aaPredicted RBP16.24■□□□□ 0.19
PRPF40A-212ENST00000545856 STARD6P59095 220 aa16.24■□□□□ 0.19
PRPF40A-212ENST00000545856 RPL26P61254 145 aaKnown RBP16.24■□□□□ 0.19
PRPF40A-212ENST00000545856 DLG2Q15700 870 aa16.24■□□□□ 0.19
PRPF40A-212ENST00000545856 TJAP1Q5JTD0 557 aa16.24■□□□□ 0.19
PRPF40A-212ENST00000545856 NAPEPLDQ6IQ20 393 aa16.24■□□□□ 0.19
PRPF40A-212ENST00000545856 TPRG1Q6ZUI0 275 aa16.24■□□□□ 0.19
PRPF40A-212ENST00000545856 DSG4Q86SJ6 1040 aa16.24■□□□□ 0.19
PRPF40A-212ENST00000545856 TSEN2Q8NCE0 465 aaKnown RBP16.24■□□□□ 0.19
PRPF40A-212ENST00000545856 HCAR2Q8TDS4 363 aa16.24■□□□□ 0.19
PRPF40A-212ENST00000545856 MYO19Q96H55 970 aa16.24■□□□□ 0.19
PRPF40A-212ENST00000545856 IER2Q9BTL4 223 aa16.24■□□□□ 0.19
PRPF40A-212ENST00000545856 TMEM245Q9H330 911 aa16.24■□□□□ 0.19
PRPF40A-212ENST00000545856 XAB2Q9HCS7 855 aaKnown RBP16.24■□□□□ 0.19
PRPF40A-212ENST00000545856 RPL26L1Q9UNX3 145 aaKnown RBP16.24■□□□□ 0.19
PRPF40A-212ENST00000545856 TRIM24O15164 1050 aa16.23■□□□□ 0.19
PRPF40A-212ENST00000545856 POP4O95707 220 aaKnown RBP16.23■□□□□ 0.19
PRPF40A-212ENST00000545856 AP2A1O95782 977 aa16.23■□□□□ 0.19
PRPF40A-212ENST00000545856 MT-CO1P00395 513 aa16.23■□□□□ 0.19
PRPF40A-212ENST00000545856 NFKBIAP25963 317 aa16.23■□□□□ 0.19
PRPF40A-212ENST00000545856 PSMB4P28070 264 aa16.23■□□□□ 0.19
PRPF40A-212ENST00000545856 KIR2DL1P43626 348 aaPredicted RBP16.23■□□□□ 0.19
PRPF40A-212ENST00000545856 SOX9P48436 509 aa16.23■□□□□ 0.19
PRPF40A-212ENST00000545856 BASP1P80723 227 aaKnown RBP16.23■□□□□ 0.19
PRPF40A-212ENST00000545856 GUCY2DQ02846 1103 aa16.23■□□□□ 0.19
PRPF40A-212ENST00000545856 CCINQ13939 588 aa16.23■□□□□ 0.19
PRPF40A-212ENST00000545856 ELAVL3Q14576 367 aaKnown RBP16.23■□□□□ 0.19
PRPF40A-212ENST00000545856 ZNF234Q14588 700 aa16.23■□□□□ 0.19
PRPF40A-212ENST00000545856 KCNJ11Q14654 390 aa16.23■□□□□ 0.19
PRPF40A-212ENST00000545856 FNDC3BQ53EP0 1204 aaKnown RBP16.23■□□□□ 0.19
PRPF40A-212ENST00000545856 CARD16Q5EG05 197 aa16.23■□□□□ 0.19
PRPF40A-212ENST00000545856 RNASEH2BQ5TBB1 312 aaKnown RBP16.23■□□□□ 0.19
PRPF40A-212ENST00000545856 SDE2Q6IQ49 451 aa16.23■□□□□ 0.19
PRPF40A-212ENST00000545856 TXNDC11Q6PKC3 985 aa16.23■□□□□ 0.19
PRPF40A-212ENST00000545856 SERPINA13PQ6UXR4 307 aa16.23■□□□□ 0.19
PRPF40A-212ENST00000545856 LINGO4Q6UY18 593 aa16.23■□□□□ 0.19
PRPF40A-212ENST00000545856 SRLQ86TD4 932 aa16.23■□□□□ 0.19
PRPF40A-212ENST00000545856 GLIS1Q8NBF1 620 aa16.23■□□□□ 0.19
PRPF40A-212ENST00000545856 ARRDC2Q8TBH0 407 aa16.23■□□□□ 0.19
PRPF40A-212ENST00000545856 FRS2Q8WU20 508 aa16.23■□□□□ 0.19
PRPF40A-212ENST00000545856 ZNF419Q96HQ0 510 aaPredicted RBP16.23■□□□□ 0.19
PRPF40A-212ENST00000545856 ZNF641Q96N77 438 aaPredicted RBP16.23■□□□□ 0.19
PRPF40A-212ENST00000545856 SRPK1Q96SB4 655 aaKnown RBP16.23■□□□□ 0.19
PRPF40A-212ENST00000545856 GABRG3Q99928 467 aa16.23■□□□□ 0.19
PRPF40A-212ENST00000545856 SEMA3CQ99985 751 aa16.23■□□□□ 0.19
PRPF40A-212ENST00000545856 TRIM51Q9BSJ1 452 aa16.23■□□□□ 0.19
PRPF40A-212ENST00000545856 ATP13A3Q9H7F0 1226 aa16.23■□□□□ 0.19
PRPF40A-212ENST00000545856 C10orf88Q9H8K7 445 aa16.23■□□□□ 0.19
PRPF40A-212ENST00000545856 SCUBE2Q9NQ36 999 aa16.23■□□□□ 0.19
PRPF40A-212ENST00000545856 MTRF1LQ9UGC7 380 aaKnown RBP16.23■□□□□ 0.19
PRPF40A-212ENST00000545856 DMGDHQ9UI17 866 aaKnown RBP16.23■□□□□ 0.19
PRPF40A-212ENST00000545856 UNC80Q8N2C7 3258 aa16.23■□□□□ 0.19
PRPF40A-212ENST00000545856 K7EQS6 105 aa16.22■□□□□ 0.19
PRPF40A-212ENST00000545856 SERPINA4P29622 427 aa16.22■□□□□ 0.19
PRPF40A-212ENST00000545856 CTSOP43234 321 aaPredicted RBP16.22■□□□□ 0.19
PRPF40A-212ENST00000545856 RPL21P46778 160 aaKnown RBP16.22■□□□□ 0.19
PRPF40A-212ENST00000545856 STK19P49842 368 aaPredicted RBP16.22■□□□□ 0.19
PRPF40A-212ENST00000545856 ITKQ08881 620 aa16.22■□□□□ 0.19
PRPF40A-212ENST00000545856 PON2Q15165 354 aa16.22■□□□□ 0.19
PRPF40A-212ENST00000545856 IZUMO3Q5VZ72 239 aa16.22■□□□□ 0.19
PRPF40A-212ENST00000545856 KCTD11Q693B1 232 aa16.22■□□□□ 0.19
PRPF40A-212ENST00000545856 FSTL4Q6MZW2 842 aa16.22■□□□□ 0.19
PRPF40A-212ENST00000545856 HIBCHQ6NVY1 386 aaPredicted RBP16.22■□□□□ 0.19
PRPF40A-212ENST00000545856 PGBD5Q8N414 524 aa16.22■□□□□ 0.19
PRPF40A-212ENST00000545856 ZNF513Q8N8E2 541 aaPredicted RBP16.22■□□□□ 0.19
PRPF40A-212ENST00000545856 LRRN4CLQ8ND94 238 aa16.22■□□□□ 0.19
PRPF40A-212ENST00000545856 TTC8Q8TAM2 541 aa16.22■□□□□ 0.19
PRPF40A-212ENST00000545856 USP33Q8TEY7 942 aa16.22■□□□□ 0.19
PRPF40A-212ENST00000545856 FEM1CQ96JP0 617 aa16.22■□□□□ 0.19
PRPF40A-212ENST00000545856 RPL10LQ96L21 214 aaKnown RBP16.22■□□□□ 0.19
PRPF40A-212ENST00000545856 ETNK1Q9HBU6 452 aa16.22■□□□□ 0.19
PRPF40A-212ENST00000545856 EPB41L5Q9HCM4 733 aa16.22■□□□□ 0.19
PRPF40A-212ENST00000545856 FBXL21Q9UKT6 434 aa16.22■□□□□ 0.19
PRPF40A-212ENST00000545856 FCF1Q9Y324 198 aaKnown RBP16.22■□□□□ 0.19
PRPF40A-212ENST00000545856 TTLL3Q9Y4R7 772 aa16.22■□□□□ 0.19
PRPF40A-212ENST00000545856 EIF3HO15372 352 aaKnown RBP eCLIP16.21■□□□□ 0.19
PRPF40A-212ENST00000545856 SMAD6O43541 496 aaKnown RBP16.21■□□□□ 0.19
PRPF40A-212ENST00000545856 PPFIA2O75334 1257 aa16.21■□□□□ 0.19
PRPF40A-212ENST00000545856 ZNF821O75541 412 aaPredicted RBP16.21■□□□□ 0.19
PRPF40A-212ENST00000545856 METTL18O95568 372 aa16.21■□□□□ 0.19
PRPF40A-212ENST00000545856 PRNPP04156 253 aa16.21■□□□□ 0.19
PRPF40A-212ENST00000545856 APRTP07741 180 aa16.21■□□□□ 0.19
PRPF40A-212ENST00000545856 RHOXF2BP0C7M4 288 aa16.21■□□□□ 0.19
PRPF40A-212ENST00000545856 ZSCAN5DPP0CG00 497 aa16.21■□□□□ 0.19
PRPF40A-212ENST00000545856 ETS1P14921 441 aa16.21■□□□□ 0.19
PRPF40A-212ENST00000545856 HLA-DPA1P20036 260 aa16.21■□□□□ 0.19
PRPF40A-212ENST00000545856 NTSR1P30989 418 aa16.21■□□□□ 0.19
PRPF40A-212ENST00000545856 MAGEA9P43362 315 aa16.21■□□□□ 0.19
PRPF40A-212ENST00000545856 SUOXP51687 545 aa16.21■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms