RNA–Protein interactions for RNA: ENST00000545308.5

SNHG1-222, Transcript of small nucleolar RNA host gene 1, human

TSL 2

Gene SNHG1, Length 646 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNHG1-222	ENST00000545308	NPL	Q9BXD5	320 aa	Predicted RBP	4.38	□□□□□ -1.71
SNHG1-222	ENST00000545308	HEMGN	Q9BXL5	484 aa		4.38	□□□□□ -1.71
SNHG1-222	ENST00000545308	SLC32A1	Q9H598	525 aa		4.38	□□□□□ -1.71
SNHG1-222	ENST00000545308	ASIC5	Q9NY37	505 aa		4.38	□□□□□ -1.71
SNHG1-222	ENST00000545308	MPP6	Q9NZW5	540 aa		4.38	□□□□□ -1.71
SNHG1-222	ENST00000545308	SLCO3A1	Q9UIG8	710 aa		4.38	□□□□□ -1.71
SNHG1-222	ENST00000545308	LYVE1	Q9Y5Y7	322 aa		4.38	□□□□□ -1.71
SNHG1-222	ENST00000545308	KCNE2	Q9Y6J6	123 aa		4.38	□□□□□ -1.71
SNHG1-222	ENST00000545308	MROH1	Q8NDA8	1641 aa		4.38	□□□□□ -1.71
SNHG1-222	ENST00000545308	EIF2AK4	Q9P2K8	1649 aa	Known RBP	4.38	□□□□□ -1.71
SNHG1-222	ENST00000545308	TET3	O43151	1660 aa		4.38	□□□□□ -1.71
SNHG1-222	ENST00000545308	SIPA1L2	Q9P2F8	1722 aa	Predicted RBP	4.38	□□□□□ -1.71
SNHG1-222	ENST00000545308	SETD5	Q9C0A6	1442 aa		4.38	□□□□□ -1.71
SNHG1-222	ENST00000545308	TIAM1	Q13009	1591 aa		4.37	□□□□□ -1.71
SNHG1-222	ENST00000545308	NWD1	Q149M9	1564 aa		4.37	□□□□□ -1.71
SNHG1-222	ENST00000545308	TEX13C	A0A0J9YWL9	993 aa		4.37	□□□□□ -1.71
SNHG1-222	ENST00000545308	LOC105378220	A0A1B0GUY1	285 aa	Predicted RBP	4.37	□□□□□ -1.71
SNHG1-222	ENST00000545308	IFNL4	K9M1U5	179 aa		4.37	□□□□□ -1.71
SNHG1-222	ENST00000545308	CLIC1	O00299	241 aa		4.37	□□□□□ -1.71
SNHG1-222	ENST00000545308	CCNDBP1	O95273	360 aa		4.37	□□□□□ -1.71
SNHG1-222	ENST00000545308	CHRM4	P08173	479 aa		4.37	□□□□□ -1.71
SNHG1-222	ENST00000545308	EBLN1	P0CF75	366 aa		4.37	□□□□□ -1.71
SNHG1-222	ENST00000545308	CSH1	P0DML2	217 aa		4.37	□□□□□ -1.71
SNHG1-222	ENST00000545308	CSH2	P0DML3	217 aa		4.37	□□□□□ -1.71
SNHG1-222	ENST00000545308	CDK4	P11802	303 aa		4.37	□□□□□ -1.71
SNHG1-222	ENST00000545308	RARG	P13631	454 aa		4.37	□□□□□ -1.71
SNHG1-222	ENST00000545308	HOXB9	P17482	250 aa	Predicted RBP	4.37	□□□□□ -1.71
SNHG1-222	ENST00000545308	NFKBIA	P25963	317 aa		4.37	□□□□□ -1.71
SNHG1-222	ENST00000545308	TYK2	P29597	1187 aa		4.37	□□□□□ -1.71
SNHG1-222	ENST00000545308	GJC1	P36383	396 aa		4.37	□□□□□ -1.71
SNHG1-222	ENST00000545308	PTPN9	P43378	593 aa		4.37	□□□□□ -1.71
SNHG1-222	ENST00000545308	EFNA5	P52803	228 aa		4.37	□□□□□ -1.71
SNHG1-222	ENST00000545308	ADPRH	P54922	357 aa		4.37	□□□□□ -1.71
SNHG1-222	ENST00000545308	EEFSEC	P57772	596 aa	Known RBP	4.37	□□□□□ -1.71
SNHG1-222	ENST00000545308	RPL7A	P62424	266 aa	Known RBP	4.37	□□□□□ -1.71
SNHG1-222	ENST00000545308	CYP4F2	P78329	520 aa		4.37	□□□□□ -1.71
SNHG1-222	ENST00000545308	BLOC1S1	P78537	153 aa		4.37	□□□□□ -1.71
SNHG1-222	ENST00000545308	IFI35	P80217	286 aa	Predicted RBP	4.37	□□□□□ -1.71
SNHG1-222	ENST00000545308	ZBTB16	Q05516	673 aa		4.37	□□□□□ -1.71
SNHG1-222	ENST00000545308	MFSD13A	Q14CX5	517 aa		4.37	□□□□□ -1.71
SNHG1-222	ENST00000545308	ANKRD16	Q6P6B7	361 aa		4.37	□□□□□ -1.71
SNHG1-222	ENST00000545308	TMEM81	Q6P7N7	255 aa		4.37	□□□□□ -1.71
SNHG1-222	ENST00000545308		Q6ZNX1	250 aa		4.37	□□□□□ -1.71
SNHG1-222	ENST00000545308	BCDIN3D	Q7Z5W3	292 aa	Known RBP	4.37	□□□□□ -1.71
SNHG1-222	ENST00000545308	SRBD1	Q8N5C6	995 aa	Known RBP	4.37	□□□□□ -1.71
SNHG1-222	ENST00000545308	FAM98A	Q8NCA5	519 aa	Known RBP	4.37	□□□□□ -1.71
SNHG1-222	ENST00000545308	TBC1D5	Q92609	795 aa		4.37	□□□□□ -1.71
SNHG1-222	ENST00000545308	NELL1	Q92832	810 aa		4.37	□□□□□ -1.71
SNHG1-222	ENST00000545308	KLHL29	Q96CT2	875 aa		4.37	□□□□□ -1.71
SNHG1-222	ENST00000545308	SAAL1	Q96ER3	474 aa		4.37	□□□□□ -1.71
SNHG1-222	ENST00000545308	ZNF845	Q96IR2	970 aa	Predicted RBP	4.37	□□□□□ -1.71
SNHG1-222	ENST00000545308	ADGRE3	Q9BY15	652 aa		4.37	□□□□□ -1.71
SNHG1-222	ENST00000545308	FTO	Q9C0B1	505 aa	Known RBP eCLIP	4.37	□□□□□ -1.71
SNHG1-222	ENST00000545308	CIPC	Q9C0C6	399 aa		4.37	□□□□□ -1.71
SNHG1-222	ENST00000545308	TMEM248	Q9NWD8	314 aa		4.37	□□□□□ -1.71
SNHG1-222	ENST00000545308	ASNSD1	Q9NWL6	643 aa		4.37	□□□□□ -1.71
SNHG1-222	ENST00000545308	HCFC1R1	Q9NWW0	138 aa		4.37	□□□□□ -1.71
SNHG1-222	ENST00000545308	GAR1	Q9NY12	217 aa	Known RBP	4.37	□□□□□ -1.71
SNHG1-222	ENST00000545308	NFKBIL1	Q9UBC1	381 aa	Predicted RBP	4.37	□□□□□ -1.71
SNHG1-222	ENST00000545308	PEMT	Q9UBM1	199 aa		4.37	□□□□□ -1.71
SNHG1-222	ENST00000545308	UPB1	Q9UBR1	384 aa		4.37	□□□□□ -1.71
SNHG1-222	ENST00000545308	SLC25A13	Q9UJS0	675 aa		4.37	□□□□□ -1.71
SNHG1-222	ENST00000545308	SNX8	Q9Y5X2	465 aa		4.37	□□□□□ -1.71
SNHG1-222	ENST00000545308	MAST3	O60307	1309 aa		4.37	□□□□□ -1.71
SNHG1-222	ENST00000545308	SPATA31A1	Q5TZJ5	1347 aa		4.37	□□□□□ -1.71
SNHG1-222	ENST00000545308	ZNF644	Q9H582	1327 aa	Predicted RBP	4.37	□□□□□ -1.71
SNHG1-222	ENST00000545308	BLM	P54132	1417 aa	Predicted RBP	4.37	□□□□□ -1.71
SNHG1-222	ENST00000545308	NCOA2	Q15596	1464 aa		4.37	□□□□□ -1.71
SNHG1-222	ENST00000545308	EFCAB6	Q5THR3	1501 aa		4.36	□□□□□ -1.71
SNHG1-222	ENST00000545308	LRP5	O75197	1615 aa		4.36	□□□□□ -1.71
SNHG1-222	ENST00000545308	LIPT2	A6NK58	231 aa		4.36	□□□□□ -1.71
SNHG1-222	ENST00000545308	TTC34	A8MYJ7	566 aa		4.36	□□□□□ -1.71
SNHG1-222	ENST00000545308	MCIDAS	D6RGH6	385 aa		4.36	□□□□□ -1.71
SNHG1-222	ENST00000545308	QSOX1	O00391	747 aa		4.36	□□□□□ -1.71
SNHG1-222	ENST00000545308	CEP104	O60308	925 aa		4.36	□□□□□ -1.71
SNHG1-222	ENST00000545308	SEC14L2	O76054	403 aa		4.36	□□□□□ -1.71
SNHG1-222	ENST00000545308	CYP2D6	P10635	497 aa		4.36	□□□□□ -1.71
SNHG1-222	ENST00000545308	NDUFB7	P17568	137 aa		4.36	□□□□□ -1.71
SNHG1-222	ENST00000545308	GARS	P41250	739 aa	Known RBP	4.36	□□□□□ -1.71
SNHG1-222	ENST00000545308	GRIA3	P42263	894 aa		4.36	□□□□□ -1.71
SNHG1-222	ENST00000545308	CPA2	P48052	419 aa		4.36	□□□□□ -1.71
SNHG1-222	ENST00000545308	PTH2R	P49190	550 aa		4.36	□□□□□ -1.71
SNHG1-222	ENST00000545308	CTCF	P49711	727 aa	Predicted RBP	4.36	□□□□□ -1.71
SNHG1-222	ENST00000545308	VPS41	P49754	854 aa		4.36	□□□□□ -1.71
SNHG1-222	ENST00000545308	NEXN	Q0ZGT2	675 aa		4.36	□□□□□ -1.71
SNHG1-222	ENST00000545308	CHAF1B	Q13112	559 aa		4.36	□□□□□ -1.71
SNHG1-222	ENST00000545308	FAM133B	Q5BKY9	247 aa	Known RBP	4.36	□□□□□ -1.71
SNHG1-222	ENST00000545308	AARS2	Q5JTZ9	985 aa	Known RBP	4.36	□□□□□ -1.71
SNHG1-222	ENST00000545308	PCID2	Q5JVF3	399 aa		4.36	□□□□□ -1.71
SNHG1-222	ENST00000545308	SPECC1	Q5M775	1068 aa		4.36	□□□□□ -1.71
SNHG1-222	ENST00000545308	TTI2	Q6NXR4	508 aa		4.36	□□□□□ -1.71
SNHG1-222	ENST00000545308	CDC73	Q6P1J9	531 aa		4.36	□□□□□ -1.71
SNHG1-222	ENST00000545308	SLC30A9	Q6PML9	568 aa		4.36	□□□□□ -1.71
SNHG1-222	ENST00000545308	CYP20A1	Q6UW02	462 aa		4.36	□□□□□ -1.71
SNHG1-222	ENST00000545308	NAPRT	Q6XQN6	538 aa		4.36	□□□□□ -1.71
SNHG1-222	ENST00000545308	SLC44A3	Q8N4M1	653 aa		4.36	□□□□□ -1.71
SNHG1-222	ENST00000545308	ADPRHL1	Q8NDY3	354 aa		4.36	□□□□□ -1.71
SNHG1-222	ENST00000545308	FYTTD1	Q96QD9	318 aa	Known RBP	4.36	□□□□□ -1.71
SNHG1-222	ENST00000545308	SLF1	Q9BQI6	1058 aa		4.36	□□□□□ -1.71
SNHG1-222	ENST00000545308	ABHD14A	Q9BUJ0	271 aa		4.36	□□□□□ -1.71

Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms