RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 ELAC1Q9H777 363 aaKnown RBP5.33□□□□□ -1.56
USP28-213ENST00000544967 CPNE5Q9HCH3 593 aa5.33□□□□□ -1.56
USP28-213ENST00000544967 ALG13Q9NP73 1137 aaKnown RBP5.33□□□□□ -1.56
USP28-213ENST00000544967 MAN1C1Q9NR34 630 aa5.33□□□□□ -1.56
USP28-213ENST00000544967 NPAP1Q9NZP6 1156 aa5.33□□□□□ -1.56
USP28-213ENST00000544967 ARMCX1Q9P291 453 aa5.33□□□□□ -1.56
USP28-213ENST00000544967 CDV3Q9UKY7 258 aaKnown RBP5.33□□□□□ -1.56
USP28-213ENST00000544967 RNF11Q9Y3C5 154 aa5.33□□□□□ -1.56
USP28-213ENST00000544967 PCDHB13Q9Y5F0 798 aa5.33□□□□□ -1.56
USP28-213ENST00000544967 STYXL1Q9Y6J8 313 aa5.33□□□□□ -1.56
USP28-213ENST00000544967 FAM172BPA6NC97 362 aa5.33□□□□□ -1.56
USP28-213ENST00000544967 ATMINO43313 823 aaPredicted RBP5.33□□□□□ -1.56
USP28-213ENST00000544967 MCF2P10911 925 aa5.33□□□□□ -1.56
USP28-213ENST00000544967 INSRRP14616 1297 aa5.33□□□□□ -1.56
USP28-213ENST00000544967 GALNSP34059 522 aa5.33□□□□□ -1.56
USP28-213ENST00000544967 RFC1P35251 1148 aaPredicted RBP5.33□□□□□ -1.56
USP28-213ENST00000544967 ACADSBP45954 432 aa5.33□□□□□ -1.56
USP28-213ENST00000544967 HARS2P49590 506 aaKnown RBP5.33□□□□□ -1.56
USP28-213ENST00000544967 CASP4P49662 377 aa5.33□□□□□ -1.56
USP28-213ENST00000544967 GPC3P51654 580 aa5.33□□□□□ -1.56
USP28-213ENST00000544967 CCR3P51677 355 aa5.33□□□□□ -1.56
USP28-213ENST00000544967 CRYBB1P53674 252 aaPredicted RBP5.33□□□□□ -1.56
USP28-213ENST00000544967 MRPS6P82932 125 aaKnown RBP5.33□□□□□ -1.56
USP28-213ENST00000544967 TAP1Q03518 808 aa5.33□□□□□ -1.56
USP28-213ENST00000544967 KDSRQ06136 332 aa5.33□□□□□ -1.56
USP28-213ENST00000544967 HSPA14Q0VDF9 509 aa5.33□□□□□ -1.56
USP28-213ENST00000544967 BFSP2Q13515 415 aa5.33□□□□□ -1.56
USP28-213ENST00000544967 PTK2BQ14289 1009 aa5.33□□□□□ -1.56
USP28-213ENST00000544967 NR1D2Q14995 579 aa5.33□□□□□ -1.56
USP28-213ENST00000544967 ACAP1Q15027 740 aa5.33□□□□□ -1.56
USP28-213ENST00000544967 TAZQ16635 292 aa5.33□□□□□ -1.56
USP28-213ENST00000544967 CBWD6Q4V339 395 aa5.33□□□□□ -1.56
USP28-213ENST00000544967 PIGGQ5H8A4 983 aa5.33□□□□□ -1.56
USP28-213ENST00000544967 CBWD3Q5JTY5 395 aa5.33□□□□□ -1.56
USP28-213ENST00000544967 CBWD5Q5RIA9 395 aa5.33□□□□□ -1.56
USP28-213ENST00000544967 INTS11Q5TA45 600 aaKnown RBP5.33□□□□□ -1.56
USP28-213ENST00000544967 C16orf59Q7L2K0 433 aa5.33□□□□□ -1.56
USP28-213ENST00000544967 LYSMD3Q7Z3D4 306 aa5.33□□□□□ -1.56
USP28-213ENST00000544967 POLNQ7Z5Q5 900 aa5.33□□□□□ -1.56
USP28-213ENST00000544967 LILRB4Q8NHJ6 448 aa5.33□□□□□ -1.56
USP28-213ENST00000544967 RP9Q8TA86 221 aaKnown RBP5.33□□□□□ -1.56
USP28-213ENST00000544967 PHOSPHO2Q8TCD6 241 aa5.33□□□□□ -1.56
USP28-213ENST00000544967 SLC20A1Q8WUM9 679 aa5.33□□□□□ -1.56
USP28-213ENST00000544967 TXNDC15Q96J42 360 aa5.33□□□□□ -1.56
USP28-213ENST00000544967 MAGED4Q96JG8 741 aa5.33□□□□□ -1.56
USP28-213ENST00000544967 CLPTM1LQ96KA5 538 aa5.33□□□□□ -1.56
USP28-213ENST00000544967 SLC13A1Q9BZW2 595 aa5.33□□□□□ -1.56
USP28-213ENST00000544967 DNAI2Q9GZS0 605 aa5.33□□□□□ -1.56
USP28-213ENST00000544967 TMEM206Q9H813 350 aa5.33□□□□□ -1.56
USP28-213ENST00000544967 SP140LQ9H930 580 aa5.33□□□□□ -1.56
USP28-213ENST00000544967 MRM3Q9HC36 420 aaKnown RBP5.33□□□□□ -1.56
USP28-213ENST00000544967 XAB2Q9HCS7 855 aaKnown RBP5.33□□□□□ -1.56
USP28-213ENST00000544967 IL23AQ9NPF7 189 aa5.33□□□□□ -1.56
USP28-213ENST00000544967 DIABLOQ9NR28 239 aa5.33□□□□□ -1.56
USP28-213ENST00000544967 AGPAT3Q9NRZ7 376 aa5.33□□□□□ -1.56
USP28-213ENST00000544967 OLAHQ9NV23 265 aa5.33□□□□□ -1.56
USP28-213ENST00000544967 TRNAU1APQ9NX07 287 aaKnown RBP5.33□□□□□ -1.56
USP28-213ENST00000544967 ARHGAP28Q9P2N2 729 aa5.33□□□□□ -1.56
USP28-213ENST00000544967 TIMM22Q9Y584 194 aa5.33□□□□□ -1.56
USP28-213ENST00000544967 ISPDA4D126 451 aa5.33□□□□□ -1.56
USP28-213ENST00000544967 NOP56O00567 594 aaKnown RBP5.33□□□□□ -1.56
USP28-213ENST00000544967 NOL3O60936 208 aaKnown RBP5.33□□□□□ -1.56
USP28-213ENST00000544967 C1QAP02745 245 aa5.33□□□□□ -1.56
USP28-213ENST00000544967 UGT2B4P06133 528 aa5.33□□□□□ -1.56
USP28-213ENST00000544967 INHBAP08476 426 aa5.33□□□□□ -1.56
USP28-213ENST00000544967 RALAP11233 206 aa5.33□□□□□ -1.56
USP28-213ENST00000544967 BMP1P13497 986 aa5.33□□□□□ -1.56
USP28-213ENST00000544967 P4HA1P13674 534 aa5.33□□□□□ -1.56
USP28-213ENST00000544967 CYP11B1P15538 503 aa5.33□□□□□ -1.56
USP28-213ENST00000544967 GRIK1P39086 918 aa5.33□□□□□ -1.56
USP28-213ENST00000544967 GABRB2P47870 512 aa5.33□□□□□ -1.56
USP28-213ENST00000544967 ARSEP51690 589 aa5.33□□□□□ -1.56
USP28-213ENST00000544967 SLC5A3P53794 718 aa5.33□□□□□ -1.56
USP28-213ENST00000544967 PRKAA2P54646 552 aa5.33□□□□□ -1.56
USP28-213ENST00000544967 PSMC6P62333 389 aa5.33□□□□□ -1.56
USP28-213ENST00000544967 HTRA4P83105 476 aaPredicted RBP5.33□□□□□ -1.56
USP28-213ENST00000544967 TMPRSS15P98073 1019 aa5.33□□□□□ -1.56
USP28-213ENST00000544967 GCNT1Q02742 428 aa5.33□□□□□ -1.56
USP28-213ENST00000544967 C19orf57Q0VDD7 668 aa5.33□□□□□ -1.56
USP28-213ENST00000544967 E2F2Q14209 437 aa5.33□□□□□ -1.56
USP28-213ENST00000544967 LRIT3Q3SXY7 679 aa5.33□□□□□ -1.56
USP28-213ENST00000544967 XKR4Q5GH76 650 aa5.33□□□□□ -1.56
USP28-213ENST00000544967 FBXO47Q5MNV8 452 aa5.33□□□□□ -1.56
USP28-213ENST00000544967 LIN9Q5TKA1 542 aa5.33□□□□□ -1.56
USP28-213ENST00000544967 IER5Q5VY09 327 aa5.33□□□□□ -1.56
USP28-213ENST00000544967 BTBD8Q5XKL5 378 aa5.33□□□□□ -1.56
USP28-213ENST00000544967 PPP2R2DQ66LE6 453 aa5.33□□□□□ -1.56
USP28-213ENST00000544967 ANKRD26P1Q6NSI1 321 aa5.33□□□□□ -1.56
USP28-213ENST00000544967 MZT2AQ6P582 158 aa5.33□□□□□ -1.56
USP28-213ENST00000544967 MRPL10Q7Z7H8 261 aaKnown RBP5.33□□□□□ -1.56
USP28-213ENST00000544967 AMIGO2Q86SJ2 522 aa5.33□□□□□ -1.56
USP28-213ENST00000544967 PRUNE1Q86TP1 453 aa5.33□□□□□ -1.56
USP28-213ENST00000544967 ARID3BQ8IVW6 561 aaPredicted RBP5.33□□□□□ -1.56
USP28-213ENST00000544967 UNC5BQ8IZJ1 945 aa5.33□□□□□ -1.56
USP28-213ENST00000544967 MCOLN2Q8IZK6 566 aa5.33□□□□□ -1.56
USP28-213ENST00000544967 SLC7A5P1Q8MH63 180 aa5.33□□□□□ -1.56
USP28-213ENST00000544967 PDIK1LQ8N165 341 aa5.33□□□□□ -1.56
USP28-213ENST00000544967 FIBCD1Q8N539 461 aa5.33□□□□□ -1.56
USP28-213ENST00000544967 UBR7Q8N806 425 aa5.33□□□□□ -1.56
USP28-213ENST00000544967 NIPA2Q8N8Q9 360 aa5.33□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms