RNA–Protein interactions for RNA: ENST00000543658.5

DDB1-223, Transcript of damage specific DNA binding protein 1, human

TSL 4

Gene DDB1, Length 571 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDB1-223	ENST00000543658	GRM3	Q14832	879 aa		12.06	□□□□□ -0.48
DDB1-223	ENST00000543658	PTPRN	Q16849	979 aa		12.06	□□□□□ -0.48
DDB1-223	ENST00000543658	PARP6	Q2NL67	630 aa		12.06	□□□□□ -0.48
DDB1-223	ENST00000543658	CARD16	Q5EG05	197 aa		12.06	□□□□□ -0.48
DDB1-223	ENST00000543658	RALGPS1	Q5JS13	557 aa		12.06	□□□□□ -0.48
DDB1-223	ENST00000543658	EOGT	Q5NDL2	527 aa		12.06	□□□□□ -0.48
DDB1-223	ENST00000543658		Q6ZVU0	165 aa		12.06	□□□□□ -0.48
DDB1-223	ENST00000543658	PCGF5	Q86SE9	256 aa		12.06	□□□□□ -0.48
DDB1-223	ENST00000543658	DSG4	Q86SJ6	1040 aa		12.06	□□□□□ -0.48
DDB1-223	ENST00000543658	SFTPA1	Q8IWL2	248 aa		12.06	□□□□□ -0.48
DDB1-223	ENST00000543658	SYNPO	Q8N3V7	929 aa		12.06	□□□□□ -0.48
DDB1-223	ENST00000543658	TAB3	Q8N5C8	712 aa	Predicted RBP	12.06	□□□□□ -0.48
DDB1-223	ENST00000543658	BBOF1	Q8ND07	529 aa		12.06	□□□□□ -0.48
DDB1-223	ENST00000543658	RPLP0P6	Q8NHW5	317 aa		12.06	□□□□□ -0.48
DDB1-223	ENST00000543658	OR8D1	Q8WZ84	308 aa		12.06	□□□□□ -0.48
DDB1-223	ENST00000543658	NUDCD1	Q96RS6	583 aa		12.06	□□□□□ -0.48
DDB1-223	ENST00000543658	SEMA3C	Q99985	751 aa		12.06	□□□□□ -0.48
DDB1-223	ENST00000543658	FSD1L	Q9BXM9	530 aa		12.06	□□□□□ -0.48
DDB1-223	ENST00000543658	TRIM31	Q9BZY9	425 aa		12.06	□□□□□ -0.48
DDB1-223	ENST00000543658	SLC25A51	Q9H1U9	297 aa		12.06	□□□□□ -0.48
DDB1-223	ENST00000543658	ZDHHC6	Q9H6R6	413 aa		12.06	□□□□□ -0.48
DDB1-223	ENST00000543658	RAB6B	Q9NRW1	208 aa		12.06	□□□□□ -0.48
DDB1-223	ENST00000543658	CACNA2D2	Q9NY47	1150 aa		12.06	□□□□□ -0.48
DDB1-223	ENST00000543658	ATP8A1	Q9Y2Q0	1164 aa		12.06	□□□□□ -0.48
DDB1-223	ENST00000543658	AAR2	Q9Y312	384 aa	Known RBP	12.06	□□□□□ -0.48
DDB1-223	ENST00000543658	STON1	Q9Y6Q2	735 aa		12.06	□□□□□ -0.48
DDB1-223	ENST00000543658	LOC107983988	A0A1B0GUW6	1196 aa	Predicted RBP	12.05	□□□□□ -0.48
DDB1-223	ENST00000543658	TARSL2	A2RTX5	802 aa	Known RBP	12.05	□□□□□ -0.48
DDB1-223	ENST00000543658	FAM170B	A6NMN3	283 aa		12.05	□□□□□ -0.48
DDB1-223	ENST00000543658	INSIG1	O15503	277 aa		12.05	□□□□□ -0.48
DDB1-223	ENST00000543658	DCX	O43602	365 aa		12.05	□□□□□ -0.48
DDB1-223	ENST00000543658	RNASEH1	O60930	286 aa	Known RBP	12.05	□□□□□ -0.48
DDB1-223	ENST00000543658	ATG13	O75143	517 aa		12.05	□□□□□ -0.48
DDB1-223	ENST00000543658	RHOXF2B	P0C7M4	288 aa		12.05	□□□□□ -0.48
DDB1-223	ENST00000543658	ZSCAN5DP	P0CG00	497 aa		12.05	□□□□□ -0.48
DDB1-223	ENST00000543658	ALAD	P13716	330 aa		12.05	□□□□□ -0.48
DDB1-223	ENST00000543658	HLA-E	P13747	358 aa		12.05	□□□□□ -0.48
DDB1-223	ENST00000543658	HOXB2	P14652	356 aa		12.05	□□□□□ -0.48
DDB1-223	ENST00000543658	PRKCH	P24723	683 aa		12.05	□□□□□ -0.48
DDB1-223	ENST00000543658	TARS	P26639	723 aa	Known RBP	12.05	□□□□□ -0.48
DDB1-223	ENST00000543658	RPL22	P35268	128 aa	Known RBP	12.05	□□□□□ -0.48
DDB1-223	ENST00000543658	CD86	P42081	329 aa		12.05	□□□□□ -0.48
DDB1-223	ENST00000543658	WAS	P42768	502 aa		12.05	□□□□□ -0.48
DDB1-223	ENST00000543658	PTGIR	P43119	386 aa		12.05	□□□□□ -0.48
DDB1-223	ENST00000543658	KIR2DL1	P43626	348 aa	Predicted RBP	12.05	□□□□□ -0.48
DDB1-223	ENST00000543658	CCNH	P51946	323 aa	Predicted RBP	12.05	□□□□□ -0.48
DDB1-223	ENST00000543658	TERF1	P54274	439 aa		12.05	□□□□□ -0.48
DDB1-223	ENST00000543658	NRL	P54845	237 aa		12.05	□□□□□ -0.48
DDB1-223	ENST00000543658	DSC2	Q02487	901 aa		12.05	□□□□□ -0.48
DDB1-223	ENST00000543658	BCL2L1	Q07817	233 aa		12.05	□□□□□ -0.48
DDB1-223	ENST00000543658	NSUN2	Q08J23	767 aa	Known RBP eCLIP	12.05	□□□□□ -0.48
DDB1-223	ENST00000543658	MPP3	Q13368	585 aa		12.05	□□□□□ -0.48
DDB1-223	ENST00000543658	CCIN	Q13939	588 aa		12.05	□□□□□ -0.48
DDB1-223	ENST00000543658	HNRNPA1L2	Q32P51	320 aa	Known RBP	12.05	□□□□□ -0.48
DDB1-223	ENST00000543658	ATXN7L2	Q5T6C5	722 aa	Predicted RBP	12.05	□□□□□ -0.48
DDB1-223	ENST00000543658	EMC10	Q5UCC4	262 aa		12.05	□□□□□ -0.48
DDB1-223	ENST00000543658	SRL	Q86TD4	932 aa		12.05	□□□□□ -0.48
DDB1-223	ENST00000543658	PRUNE1	Q86TP1	453 aa		12.05	□□□□□ -0.48
DDB1-223	ENST00000543658	PGBD5	Q8N414	524 aa		12.05	□□□□□ -0.48
DDB1-223	ENST00000543658	ZNF366	Q8N895	744 aa		12.05	□□□□□ -0.48
DDB1-223	ENST00000543658	TXNDC5	Q8NBS9	432 aa	Known RBP	12.05	□□□□□ -0.48
DDB1-223	ENST00000543658	NOA1	Q8NC60	698 aa	Known RBP	12.05	□□□□□ -0.48
DDB1-223	ENST00000543658	UBXN4	Q92575	508 aa		12.05	□□□□□ -0.48
DDB1-223	ENST00000543658	IFT43	Q96FT9	208 aa		12.05	□□□□□ -0.48
DDB1-223	ENST00000543658	SNF8	Q96H20	258 aa		12.05	□□□□□ -0.48
DDB1-223	ENST00000543658	MYO19	Q96H55	970 aa		12.05	□□□□□ -0.48
DDB1-223	ENST00000543658	FCRL5	Q96RD9	977 aa		12.05	□□□□□ -0.48
DDB1-223	ENST00000543658	RBM15	Q96T37	977 aa	Known RBP eCLIP	12.05	□□□□□ -0.48	3e-7	■■□□□ 13.6
DDB1-223	ENST00000543658	HEPH	Q9BQS7	1158 aa		12.05	□□□□□ -0.48
DDB1-223	ENST00000543658	RHOXF2	Q9BQY4	288 aa		12.05	□□□□□ -0.48
DDB1-223	ENST00000543658	LRRC1	Q9BTT6	524 aa		12.05	□□□□□ -0.48
DDB1-223	ENST00000543658	ATP13A3	Q9H7F0	1226 aa		12.05	□□□□□ -0.48
DDB1-223	ENST00000543658	FBRS	Q9HAH7	460 aa		12.05	□□□□□ -0.48
DDB1-223	ENST00000543658	LMAN1L	Q9HAT1	526 aa		12.05	□□□□□ -0.48
DDB1-223	ENST00000543658	CD320	Q9NPF0	282 aa		12.05	□□□□□ -0.48
DDB1-223	ENST00000543658	ZDHHC4	Q9NPG8	344 aa		12.05	□□□□□ -0.48
DDB1-223	ENST00000543658	HECA	Q9UBI9	543 aa	Predicted RBP	12.05	□□□□□ -0.48
DDB1-223	ENST00000543658	FAM153A	Q9UHL3	310 aa		12.05	□□□□□ -0.48
DDB1-223	ENST00000543658	EVL	Q9UI08	416 aa	Predicted RBP	12.05	□□□□□ -0.48
DDB1-223	ENST00000543658	COL6A3	P12111	3177 aa		12.04	□□□□□ -0.48
DDB1-223	ENST00000543658	TRBV21OR9-2	A0A075B6F4	123 aa	Predicted RBP	12.04	□□□□□ -0.48
DDB1-223	ENST00000543658	ERI2	A8K979	691 aa	Known RBP	12.04	□□□□□ -0.48
DDB1-223	ENST00000543658	C1QTNF3-AMACR	E9PGA6	284 aa		12.04	□□□□□ -0.48
DDB1-223	ENST00000543658	ALOX15B	O15296	676 aa		12.04	□□□□□ -0.48
DDB1-223	ENST00000543658	POP4	O95707	220 aa	Known RBP	12.04	□□□□□ -0.48
DDB1-223	ENST00000543658	PRNP	P04156	253 aa		12.04	□□□□□ -0.48
DDB1-223	ENST00000543658	SERPINA4	P29622	427 aa		12.04	□□□□□ -0.48
DDB1-223	ENST00000543658	CSNK1D	P48730	415 aa		12.04	□□□□□ -0.48
DDB1-223	ENST00000543658	MRPS25	P82663	173 aa	Known RBP	12.04	□□□□□ -0.48
DDB1-223	ENST00000543658	SARNP	P82979	210 aa	Known RBP	12.04	□□□□□ -0.48
DDB1-223	ENST00000543658	SLC7A5	Q01650	507 aa		12.04	□□□□□ -0.48
DDB1-223	ENST00000543658	ELAVL3	Q14576	367 aa	Known RBP	12.04	□□□□□ -0.48
DDB1-223	ENST00000543658	PCSK7	Q16549	785 aa		12.04	□□□□□ -0.48
DDB1-223	ENST00000543658	FAXC	Q5TGI0	409 aa		12.04	□□□□□ -0.48
DDB1-223	ENST00000543658	IZUMO3	Q5VZ72	239 aa		12.04	□□□□□ -0.48
DDB1-223	ENST00000543658	ALG1L	Q6GMV1	187 aa		12.04	□□□□□ -0.48
DDB1-223	ENST00000543658	PLPP6	Q8IY26	295 aa		12.04	□□□□□ -0.48
DDB1-223	ENST00000543658	CNTD1	Q8N815	330 aa		12.04	□□□□□ -0.48
DDB1-223	ENST00000543658	IL17RC	Q8NAC3	791 aa		12.04	□□□□□ -0.48
DDB1-223	ENST00000543658	GLIS1	Q8NBF1	620 aa		12.04	□□□□□ -0.48

Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms