RNA–Protein interactions for RNA: ENST00000542407.5

PDLIM5-221, Transcript of PDZ and LIM domain 5, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PDLIM5, Length 2,979 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-221ENST00000542407 ZNF560Q96MR9 790 aa8.11□□□□□ -1.11
PDLIM5-221ENST00000542407 MANSC1Q9H8J5 431 aa8.11□□□□□ -1.11
PDLIM5-221ENST00000542407 AGO3Q9H9G7 860 aaKnown RBP8.11□□□□□ -1.11
PDLIM5-221ENST00000542407 SLC7A8Q9UHI5 535 aa8.11□□□□□ -1.11
PDLIM5-221ENST00000542407 APPL1Q9UKG1 709 aa8.11□□□□□ -1.11
PDLIM5-221ENST00000542407 TBC1D30Q9Y2I9 924 aa8.11□□□□□ -1.11
PDLIM5-221ENST00000542407 PRKAB1Q9Y478 270 aa8.11□□□□□ -1.11
PDLIM5-221ENST00000542407 BRCA2P51587 3418 aa8.11□□□□□ -1.11
PDLIM5-221ENST00000542407 FAM237BA0A1B0GVD1 139 aa8.11□□□□□ -1.11
PDLIM5-221ENST00000542407 ARHGAP10A1A4S6 786 aa8.11□□□□□ -1.11
PDLIM5-221ENST00000542407 C2CD4BA6NLJ0 364 aa8.11□□□□□ -1.11
PDLIM5-221ENST00000542407 PRPF4O43172 522 aaKnown RBP eCLIP8.11□□□□□ -1.11
PDLIM5-221ENST00000542407 TCEA3O75764 348 aa8.11□□□□□ -1.11
PDLIM5-221ENST00000542407 KRT1P04264 644 aa8.11□□□□□ -1.11
PDLIM5-221ENST00000542407 CTSHP09668 335 aa8.11□□□□□ -1.11
PDLIM5-221ENST00000542407 PSMA2P25787 234 aa8.11□□□□□ -1.11
PDLIM5-221ENST00000542407 GJC1P36383 396 aa8.11□□□□□ -1.11
PDLIM5-221ENST00000542407 GNALP38405 381 aa8.11□□□□□ -1.11
PDLIM5-221ENST00000542407 PNPLA4P41247 253 aa8.11□□□□□ -1.11
PDLIM5-221ENST00000542407 EPHB1P54762 984 aa8.11□□□□□ -1.11
PDLIM5-221ENST00000542407 ARL4CP56559 192 aa8.11□□□□□ -1.11
PDLIM5-221ENST00000542407 LILRA4P59901 499 aa8.11□□□□□ -1.11
PDLIM5-221ENST00000542407 CDK16Q00536 496 aa8.11□□□□□ -1.11
PDLIM5-221ENST00000542407 PLCB3Q01970 1234 aa8.11□□□□□ -1.11
PDLIM5-221ENST00000542407 SP3Q02447 781 aa8.11□□□□□ -1.11
PDLIM5-221ENST00000542407 LRRC74AQ0VAA2 488 aa8.11□□□□□ -1.11
PDLIM5-221ENST00000542407 SMARCB1Q12824 385 aa8.11□□□□□ -1.11
PDLIM5-221ENST00000542407 PDE1CQ14123 709 aaPredicted RBP8.11□□□□□ -1.11
PDLIM5-221ENST00000542407 CCNG2Q16589 344 aa8.11□□□□□ -1.11
PDLIM5-221ENST00000542407 KLHL38Q2WGJ6 581 aa8.11□□□□□ -1.11
PDLIM5-221ENST00000542407 TRMT5Q32P41 509 aaKnown RBP8.11□□□□□ -1.11
PDLIM5-221ENST00000542407 RAB6CQ53S08 254 aa8.11□□□□□ -1.11
PDLIM5-221ENST00000542407 PLBD1Q6P4A8 553 aa8.11□□□□□ -1.11
PDLIM5-221ENST00000542407 ZNF704Q6ZNC4 412 aaPredicted RBP8.11□□□□□ -1.11
PDLIM5-221ENST00000542407 NET1Q7Z628 596 aaPredicted RBP8.11□□□□□ -1.11
PDLIM5-221ENST00000542407 TTC17Q96AE7 1141 aa8.11□□□□□ -1.11
PDLIM5-221ENST00000542407 ACSF2Q96CM8 615 aaPredicted RBP8.11□□□□□ -1.11
PDLIM5-221ENST00000542407 OXNAD1Q96HP4 312 aaPredicted RBP8.11□□□□□ -1.11
PDLIM5-221ENST00000542407 MRPL1Q9BYD6 325 aaKnown RBP8.11□□□□□ -1.11
PDLIM5-221ENST00000542407 RAB6CQ9H0N0 254 aa8.11□□□□□ -1.11
PDLIM5-221ENST00000542407 LIN28AQ9H9Z2 209 aaKnown RBP8.11□□□□□ -1.11
PDLIM5-221ENST00000542407 NTN4Q9HB63 628 aa8.11□□□□□ -1.11
PDLIM5-221ENST00000542407 FAM49BQ9NUQ9 324 aa8.11□□□□□ -1.11
PDLIM5-221ENST00000542407 FAM105AQ9NUU6 356 aa8.11□□□□□ -1.11
PDLIM5-221ENST00000542407 RWDD3Q9Y3V2 267 aa8.11□□□□□ -1.11
PDLIM5-221ENST00000542407 TSC2P49815 1807 aa8.11□□□□□ -1.11
PDLIM5-221ENST00000542407 FRMPD3Q5JV73 1810 aa8.11□□□□□ -1.11
PDLIM5-221ENST00000542407 C2orf72A6NCS6 295 aa8.1□□□□□ -1.11
PDLIM5-221ENST00000542407 TMEM114B3SHH9 223 aa8.1□□□□□ -1.11
PDLIM5-221ENST00000542407 F8W8V4 182 aa8.1□□□□□ -1.11
PDLIM5-221ENST00000542407 FGF18O76093 207 aa8.1□□□□□ -1.11
PDLIM5-221ENST00000542407 TFPTP0C1Z6 253 aa8.1□□□□□ -1.11
PDLIM5-221ENST00000542407 RAC2P15153 192 aa8.1□□□□□ -1.11
PDLIM5-221ENST00000542407 WARSP23381 471 aaKnown RBP8.1□□□□□ -1.11
PDLIM5-221ENST00000542407 TAF6P49848 677 aa8.1□□□□□ -1.11
PDLIM5-221ENST00000542407 EMP3P54852 163 aa8.1□□□□□ -1.11
PDLIM5-221ENST00000542407 ACTR3P61158 418 aa8.1□□□□□ -1.11
PDLIM5-221ENST00000542407 TMPRSS15P98073 1019 aa8.1□□□□□ -1.11
PDLIM5-221ENST00000542407 FOLH1Q04609 750 aa8.1□□□□□ -1.11
PDLIM5-221ENST00000542407 MTM1Q13496 603 aa8.1□□□□□ -1.11
PDLIM5-221ENST00000542407 DSC3Q14574 896 aa8.1□□□□□ -1.11
PDLIM5-221ENST00000542407 MRPL10Q7Z7H8 261 aaKnown RBP8.1□□□□□ -1.11
PDLIM5-221ENST00000542407 DHDDSQ86SQ9 333 aa8.1□□□□□ -1.11
PDLIM5-221ENST00000542407 TMPRSS6Q8IU80 811 aa8.1□□□□□ -1.11
PDLIM5-221ENST00000542407 TEX19Q8NA77 164 aa8.1□□□□□ -1.11
PDLIM5-221ENST00000542407 TCP10LQ8TDR4 215 aa8.1□□□□□ -1.11
PDLIM5-221ENST00000542407 FATE1Q969F0 183 aa8.1□□□□□ -1.11
PDLIM5-221ENST00000542407 CAPNS2Q96L46 248 aa8.1□□□□□ -1.11
PDLIM5-221ENST00000542407 CFAP57Q96MR6 1250 aa8.1□□□□□ -1.11
PDLIM5-221ENST00000542407 PRICKLE1Q96MT3 831 aaPredicted RBP8.1□□□□□ -1.11
PDLIM5-221ENST00000542407 PEBP4Q96S96 227 aa8.1□□□□□ -1.11
PDLIM5-221ENST00000542407 MIOSQ9NXC5 875 aa8.1□□□□□ -1.11
PDLIM5-221ENST00000542407 SRRDQ9UH36 339 aa8.1□□□□□ -1.11
PDLIM5-221ENST00000542407 MTO1Q9Y2Z2 717 aaKnown RBP8.1□□□□□ -1.11
PDLIM5-221ENST00000542407 PCDHGA8Q9Y5G5 932 aa8.1□□□□□ -1.11
PDLIM5-221ENST00000542407 IQANK1A0A1B0GTG1 560 aa8.1□□□□□ -1.11
PDLIM5-221ENST00000542407 ZSCAN5BA6NJL1 495 aa8.1□□□□□ -1.11
PDLIM5-221ENST00000542407 STMND1H3BQB6 276 aa8.1□□□□□ -1.11
PDLIM5-221ENST00000542407 M0QZ92 97 aa8.1□□□□□ -1.11
PDLIM5-221ENST00000542407 BUD23O43709 281 aaKnown RBP8.1□□□□□ -1.11
PDLIM5-221ENST00000542407 ADAM23O75077 832 aa8.1□□□□□ -1.11
PDLIM5-221ENST00000542407 FKBP9O95302 570 aa8.1□□□□□ -1.11
PDLIM5-221ENST00000542407 KITP10721 976 aa8.1□□□□□ -1.11
PDLIM5-221ENST00000542407 DNAJB1P25685 340 aa8.1□□□□□ -1.11
PDLIM5-221ENST00000542407 DNAJA1P31689 397 aaKnown RBP8.1□□□□□ -1.11
PDLIM5-221ENST00000542407 ZNF143P52747 638 aaPredicted RBP8.1□□□□□ -1.11
PDLIM5-221ENST00000542407 MRPS15P82914 257 aaKnown RBP8.1□□□□□ -1.11
PDLIM5-221ENST00000542407 FASTKD3Q14CZ7 662 aaKnown RBP8.1□□□□□ -1.11
PDLIM5-221ENST00000542407 SV2CQ496J9 727 aa8.1□□□□□ -1.11
PDLIM5-221ENST00000542407 SPDYAQ5MJ70 313 aa8.1□□□□□ -1.11
PDLIM5-221ENST00000542407 FAM102AQ5T9C2 384 aaPredicted RBP8.1□□□□□ -1.11
PDLIM5-221ENST00000542407 SH3PXD2AQ5TCZ1 1133 aa8.1□□□□□ -1.11
PDLIM5-221ENST00000542407 DRICH1Q6PGQ1 229 aaPredicted RBP8.1□□□□□ -1.11
PDLIM5-221ENST00000542407 POMZP3Q6PJE2 187 aa8.1□□□□□ -1.11
PDLIM5-221ENST00000542407 AGMOQ6ZNB7 445 aa8.1□□□□□ -1.11
PDLIM5-221ENST00000542407 SYDE1Q6ZW31 735 aaPredicted RBP8.1□□□□□ -1.11
PDLIM5-221ENST00000542407 PATL1Q86TB9 770 aaKnown RBP8.1□□□□□ -1.11
PDLIM5-221ENST00000542407 TOP6BLQ8N6T0 577 aa8.1□□□□□ -1.11
PDLIM5-221ENST00000542407 ICA1LQ8NDH6 482 aa8.1□□□□□ -1.11
PDLIM5-221ENST00000542407 OR6B3Q8NGW1 331 aa8.1□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms