RNA–Protein interactions for RNA: ENST00000541259.1

DDX55-208, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 460 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-208ENST00000541259 ASLP04424 464 aa9.48□□□□□ -0.89
DDX55-208ENST00000541259 ATP5BP06576 529 aaKnown RBP9.48□□□□□ -0.89
DDX55-208ENST00000541259 SRPRAP08240 638 aaKnown RBP9.48□□□□□ -0.89
DDX55-208ENST00000541259 RHOXF2BP0C7M4 288 aa9.48□□□□□ -0.89
DDX55-208ENST00000541259 HLA-EP13747 358 aa9.48□□□□□ -0.89
DDX55-208ENST00000541259 NFKB1P19838 968 aa9.48□□□□□ -0.89
DDX55-208ENST00000541259 PSMB4P28070 264 aa9.48□□□□□ -0.89
DDX55-208ENST00000541259 WASP42768 502 aa9.48□□□□□ -0.89
DDX55-208ENST00000541259 KIR2DL1P43626 348 aaPredicted RBP9.48□□□□□ -0.89
DDX55-208ENST00000541259 DSC2Q02487 901 aa9.48□□□□□ -0.89
DDX55-208ENST00000541259 ITKQ08881 620 aa9.48□□□□□ -0.89
DDX55-208ENST00000541259 NIPAL4Q0D2K0 466 aa9.48□□□□□ -0.89
DDX55-208ENST00000541259 DHX34Q14147 1143 aaKnown RBP9.48□□□□□ -0.89
DDX55-208ENST00000541259 ZNF234Q14588 700 aa9.48□□□□□ -0.89
DDX55-208ENST00000541259 ZNF235Q14590 738 aa9.48□□□□□ -0.89
DDX55-208ENST00000541259 RFTN1Q14699 578 aaPredicted RBP9.48□□□□□ -0.89
DDX55-208ENST00000541259 EIF4HQ15056 248 aaKnown RBP9.48□□□□□ -0.89
DDX55-208ENST00000541259 PPP1R7Q15435 360 aa9.48□□□□□ -0.89
DDX55-208ENST00000541259 TRADDQ15628 312 aa9.48□□□□□ -0.89
DDX55-208ENST00000541259 P3H1Q32P28 736 aa9.48□□□□□ -0.89
DDX55-208ENST00000541259 ACCSLQ4AC99 568 aa9.48□□□□□ -0.89
DDX55-208ENST00000541259 PREPLQ4J6C6 727 aaPredicted RBP9.48□□□□□ -0.89
DDX55-208ENST00000541259 FNDC3BQ53EP0 1204 aaKnown RBP9.48□□□□□ -0.89
DDX55-208ENST00000541259 C2orf27AQ580R0 203 aa9.48□□□□□ -0.89
DDX55-208ENST00000541259 TEX35Q5T0J7 233 aa9.48□□□□□ -0.89
DDX55-208ENST00000541259 SYCP2LQ5T4T6 812 aa9.48□□□□□ -0.89
DDX55-208ENST00000541259 C8orf74Q6P047 294 aa9.48□□□□□ -0.89
DDX55-208ENST00000541259 ARHGEF18Q6ZSZ5 1173 aa9.48□□□□□ -0.89
DDX55-208ENST00000541259 PHF6Q8IWS0 365 aaKnown RBP eCLIP9.48□□□□□ -0.89
DDX55-208ENST00000541259 SUGP1Q8IWZ8 645 aaKnown RBP9.48□□□□□ -0.89
DDX55-208ENST00000541259 CCDC89Q8N998 374 aa9.48□□□□□ -0.89
DDX55-208ENST00000541259 SPATA22Q8NHS9 363 aa9.48□□□□□ -0.89
DDX55-208ENST00000541259 FRS2Q8WU20 508 aa9.48□□□□□ -0.89
DDX55-208ENST00000541259 ERLEC1Q96DZ1 483 aa9.48□□□□□ -0.89
DDX55-208ENST00000541259 SPATA13Q96N96 652 aa9.48□□□□□ -0.89
DDX55-208ENST00000541259 RUNDC3BQ96NL0 473 aa9.48□□□□□ -0.89
DDX55-208ENST00000541259 PSKH2Q96QS6 385 aa9.48□□□□□ -0.89
DDX55-208ENST00000541259 VAT1Q99536 393 aa9.48□□□□□ -0.89
DDX55-208ENST00000541259 GORASP1Q9BQQ3 440 aa9.48□□□□□ -0.89
DDX55-208ENST00000541259 RHOXF2Q9BQY4 288 aa9.48□□□□□ -0.89
DDX55-208ENST00000541259 CINPQ9BW66 212 aaPredicted RBP9.48□□□□□ -0.89
DDX55-208ENST00000541259 TM6SF2Q9BZW4 377 aa9.48□□□□□ -0.89
DDX55-208ENST00000541259 TRIM31Q9BZY9 425 aa9.48□□□□□ -0.89
DDX55-208ENST00000541259 GLOD4Q9HC38 313 aa9.48□□□□□ -0.89
DDX55-208ENST00000541259 PCDH9Q9HC56 1237 aa9.48□□□□□ -0.89
DDX55-208ENST00000541259 ARHGEF3Q9NR81 526 aa9.48□□□□□ -0.89
DDX55-208ENST00000541259 POLR3BQ9NW08 1133 aaPredicted RBP9.48□□□□□ -0.89
DDX55-208ENST00000541259 THAP10Q9P2Z0 257 aaPredicted RBP9.48□□□□□ -0.89
DDX55-208ENST00000541259 WNT16Q9UBV4 365 aa9.48□□□□□ -0.89
DDX55-208ENST00000541259 SEPT3Q9UH03 358 aa9.48□□□□□ -0.89
DDX55-208ENST00000541259 FEZ2Q9UHY8 353 aaPredicted RBP9.48□□□□□ -0.89
DDX55-208ENST00000541259 DMGDHQ9UI17 866 aaKnown RBP9.48□□□□□ -0.89
DDX55-208ENST00000541259 FBXL21Q9UKT6 434 aa9.48□□□□□ -0.89
DDX55-208ENST00000541259 TRHDEQ9UKU6 1024 aa9.48□□□□□ -0.89
DDX55-208ENST00000541259 NDRG2Q9UN36 371 aaKnown RBP9.48□□□□□ -0.89
DDX55-208ENST00000541259 PLA2G4CQ9UP65 541 aa9.48□□□□□ -0.89
DDX55-208ENST00000541259 STARD13Q9Y3M8 1113 aa9.48□□□□□ -0.89
DDX55-208ENST00000541259 TECTAO75443 2155 aa9.48□□□□□ -0.89
DDX55-208ENST00000541259 DOCK9Q9BZ29 2069 aa9.47□□□□□ -0.89
DDX55-208ENST00000541259 BDP1A6H8Y1 2624 aa9.47□□□□□ -0.89
DDX55-208ENST00000541259 CXorf51AA0A1B0GTR3 108 aa9.47□□□□□ -0.89
DDX55-208ENST00000541259 FAM187AA6NFU0 413 aa9.47□□□□□ -0.89
DDX55-208ENST00000541259 MAN2B1O00754 1011 aa9.47□□□□□ -0.89
DDX55-208ENST00000541259 ATP9BO43861 1147 aa9.47□□□□□ -0.89
DDX55-208ENST00000541259 BNIP3LO60238 219 aa9.47□□□□□ -0.89
DDX55-208ENST00000541259 NEBLO76041 1014 aa9.47□□□□□ -0.89
DDX55-208ENST00000541259 STK10O94804 968 aaKnown RBP9.47□□□□□ -0.89
DDX55-208ENST00000541259 GAS8O95995 478 aa9.47□□□□□ -0.89
DDX55-208ENST00000541259 MMP2P08253 660 aa9.47□□□□□ -0.89
DDX55-208ENST00000541259 HNRNPLP14866 589 aaKnown RBP eCLIP9.47□□□□□ -0.89
DDX55-208ENST00000541259 CR2P20023 1033 aa9.47□□□□□ -0.89
DDX55-208ENST00000541259 DRD1P21728 446 aa9.47□□□□□ -0.89
DDX55-208ENST00000541259 PRKCHP24723 683 aa9.47□□□□□ -0.89
DDX55-208ENST00000541259 IVDP26440 423 aa9.47□□□□□ -0.89
DDX55-208ENST00000541259 GKP32189 559 aa9.47□□□□□ -0.89
DDX55-208ENST00000541259 IL12RB1P42701 662 aa9.47□□□□□ -0.89
DDX55-208ENST00000541259 RPL21P46778 160 aaKnown RBP9.47□□□□□ -0.89
DDX55-208ENST00000541259 SCNN1BP51168 640 aa9.47□□□□□ -0.89
DDX55-208ENST00000541259 GEMIN4P57678 1058 aaKnown RBP9.47□□□□□ -0.89
DDX55-208ENST00000541259 RHOAP61586 193 aa9.47□□□□□ -0.89
DDX55-208ENST00000541259 GRSF1Q12849 480 aaKnown RBP eCLIP9.47□□□□□ -0.89
DDX55-208ENST00000541259 GPS1Q13098 491 aa9.47□□□□□ -0.89
DDX55-208ENST00000541259 NAA30Q147X3 362 aaPredicted RBP9.47□□□□□ -0.89
DDX55-208ENST00000541259 TJAP1Q5JTD0 557 aa9.47□□□□□ -0.89
DDX55-208ENST00000541259 C22orf39Q6P5X5 142 aa9.47□□□□□ -0.89
DDX55-208ENST00000541259 ZNF852Q6ZMS4 543 aa9.47□□□□□ -0.89
DDX55-208ENST00000541259 Q6ZVU0 165 aa9.47□□□□□ -0.89
DDX55-208ENST00000541259 MAATS1Q7Z4T9 603 aa9.47□□□□□ -0.89
DDX55-208ENST00000541259 PRPF39Q86UA1 669 aaKnown RBP9.47□□□□□ -0.89
DDX55-208ENST00000541259 UBALD2Q8IYN6 164 aa9.47□□□□□ -0.89
DDX55-208ENST00000541259 SIX5Q8N196 739 aa9.47□□□□□ -0.89
DDX55-208ENST00000541259 OR6K2Q8NGY2 324 aa9.47□□□□□ -0.89
DDX55-208ENST00000541259 ARRDC2Q8TBH0 407 aa9.47□□□□□ -0.89
DDX55-208ENST00000541259 UCMAQ8WVF2 138 aa9.47□□□□□ -0.89
DDX55-208ENST00000541259 CASKIN2Q8WXE0 1202 aa9.47□□□□□ -0.89
DDX55-208ENST00000541259 PTPRN2Q92932 1015 aa9.47□□□□□ -0.89
DDX55-208ENST00000541259 VOPP1Q96AW1 172 aa9.47□□□□□ -0.89
DDX55-208ENST00000541259 RBM15Q96T37 977 aaKnown RBP eCLIP9.47□□□□□ -0.893e-10■■□□□ 13.4
DDX55-208ENST00000541259 SEMA3CQ99985 751 aa9.47□□□□□ -0.89
DDX55-208ENST00000541259 FERMT1Q9BQL6 677 aa9.47□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms