RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 LRIG2O94898 1065 aa8.84□□□□□ -0.99
YBX3-208ENST00000540447 PVALBP20472 110 aaPredicted RBP8.84□□□□□ -0.99
YBX3-208ENST00000540447 CYP3A5P20815 502 aa8.84□□□□□ -0.99
YBX3-208ENST00000540447 ELP6Q0PNE2 266 aa8.84□□□□□ -0.99
YBX3-208ENST00000540447 TBC1D25Q3MII6 688 aa8.84□□□□□ -0.99
YBX3-208ENST00000540447 RAB12Q6IQ22 244 aa8.84□□□□□ -0.99
YBX3-208ENST00000540447 MCPH1Q8NEM0 835 aa8.84□□□□□ -0.99
YBX3-208ENST00000540447 IP6K1Q92551 441 aa8.84□□□□□ -0.99
YBX3-208ENST00000540447 C1GALT1C1Q96EU7 318 aa8.84□□□□□ -0.99
YBX3-208ENST00000540447 RIOK2Q9BVS4 552 aaKnown RBP8.84□□□□□ -0.99
YBX3-208ENST00000540447 CDADC1Q9BWV3 514 aa8.84□□□□□ -0.99
YBX3-208ENST00000540447 MID1IP1Q9NPA3 183 aa8.84□□□□□ -0.99
YBX3-208ENST00000540447 UBP1Q9NZI7 540 aa8.84□□□□□ -0.99
YBX3-208ENST00000540447 COG5Q9UP83 839 aa8.84□□□□□ -0.99
YBX3-208ENST00000540447 POMPQ9Y244 141 aa8.84□□□□□ -0.99
YBX3-208ENST00000540447 ADGRL2O95490 1459 aa8.84□□□□□ -0.99
YBX3-208ENST00000540447 LCP1P13796 627 aa8.84□□□□□ -0.99
YBX3-208ENST00000540447 SSX6Q7RTT6 188 aa8.84□□□□□ -0.99
YBX3-208ENST00000540447 OR52K2Q8NGK3 314 aa8.84□□□□□ -0.99
YBX3-208ENST00000540447 GLT1D1Q96MS3 346 aa8.84□□□□□ -0.99
YBX3-208ENST00000540447 RMDN3Q96TC7 470 aa8.84□□□□□ -0.99
YBX3-208ENST00000540447 EIF2AK1Q9BQI3 630 aaKnown RBP8.84□□□□□ -0.99
YBX3-208ENST00000540447 ZNF350Q9GZX5 532 aa8.84□□□□□ -0.99
YBX3-208ENST00000540447 POLE4Q9NR33 117 aa8.84□□□□□ -0.99
YBX3-208ENST00000540447 CHST7Q9NS84 486 aa8.84□□□□□ -0.99
YBX3-208ENST00000540447 GABBR1Q9UBS5 961 aa8.84□□□□□ -0.99
YBX3-208ENST00000540447 MAU2Q9Y6X3 613 aa8.84□□□□□ -0.99
YBX3-208ENST00000540447 TPP1O14773 563 aa8.84□□□□□ -0.99
YBX3-208ENST00000540447 CHRM3P20309 590 aa8.84□□□□□ -0.99
YBX3-208ENST00000540447 MAD2L1Q13257 205 aaPredicted RBP8.84□□□□□ -0.99
YBX3-208ENST00000540447 PLEKHG6Q3KR16 790 aa8.84□□□□□ -0.99
YBX3-208ENST00000540447 COMMD7Q86VX2 200 aa8.84□□□□□ -0.99
YBX3-208ENST00000540447 SLITRK4Q8IW52 837 aa8.84□□□□□ -0.99
YBX3-208ENST00000540447 SMG8Q8ND04 991 aaKnown RBP8.84□□□□□ -0.99
YBX3-208ENST00000540447 LPGAT1Q92604 370 aa8.84□□□□□ -0.99
YBX3-208ENST00000540447 DYNLL2Q96FJ2 89 aa8.84□□□□□ -0.99
YBX3-208ENST00000540447 C8orf37Q96NL8 207 aa8.84□□□□□ -0.99
YBX3-208ENST00000540447 VAT1Q99536 393 aa8.84□□□□□ -0.99
YBX3-208ENST00000540447 POP1Q99575 1024 aaKnown RBP8.84□□□□□ -0.99
YBX3-208ENST00000540447 MKRN2Q9H000 416 aaKnown RBP8.84□□□□□ -0.99
YBX3-208ENST00000540447 SEMA6BQ9H3T3 888 aa8.84□□□□□ -0.99
YBX3-208ENST00000540447 NCKAP1Q9Y2A7 1128 aa8.84□□□□□ -0.99
YBX3-208ENST00000540447 NCKAP5LQ9HCH0 1330 aa8.84□□□□□ -0.99
YBX3-208ENST00000540447 A0A1W2PPM1 405 aa8.84□□□□□ -0.99
YBX3-208ENST00000540447 DISC1C4P0D8 188 aa8.84□□□□□ -0.99
YBX3-208ENST00000540447 EIF3DO15371 548 aaKnown RBP eCLIP8.84□□□□□ -0.99
YBX3-208ENST00000540447 HDAC3O15379 428 aa8.84□□□□□ -0.99
YBX3-208ENST00000540447 BNIP3LO60238 219 aa8.84□□□□□ -0.99
YBX3-208ENST00000540447 CCNYL3P0C7X3 344 aa8.84□□□□□ -0.99
YBX3-208ENST00000540447 STK11Q15831 433 aa8.84□□□□□ -0.99
YBX3-208ENST00000540447 RAP1GAP2Q684P5 730 aa8.84□□□□□ -0.99
YBX3-208ENST00000540447 DPY19L3Q6ZPD9 716 aa8.84□□□□□ -0.99
YBX3-208ENST00000540447 PGAM4Q8N0Y7 254 aa8.84□□□□□ -0.99
YBX3-208ENST00000540447 ZNF420Q8TAQ5 688 aaPredicted RBP8.84□□□□□ -0.99
YBX3-208ENST00000540447 CENPNQ96H22 339 aaPredicted RBP8.84□□□□□ -0.99
YBX3-208ENST00000540447 TSNAXQ99598 290 aaKnown RBP8.84□□□□□ -0.99
YBX3-208ENST00000540447 RBM4BQ9BQ04 359 aaKnown RBP8.84□□□□□ -0.99
YBX3-208ENST00000540447 RBM4Q9BWF3 364 aaKnown RBP8.84□□□□□ -0.99
YBX3-208ENST00000540447 OXCT2Q9BYC2 517 aaPredicted RBP8.84□□□□□ -0.99
YBX3-208ENST00000540447 RAD18Q9NS91 495 aa8.84□□□□□ -0.99
YBX3-208ENST00000540447 PPM1HQ9ULR3 514 aa8.84□□□□□ -0.99
YBX3-208ENST00000540447 PZPP20742 1482 aa8.84□□□□□ -0.99
YBX3-208ENST00000540447 KANTRA0A1W2PQU2 76 aa8.84□□□□□ -0.99
YBX3-208ENST00000540447 L7N2F9 121 aa8.84□□□□□ -0.99
YBX3-208ENST00000540447 MAGEB2O15479 319 aa8.84□□□□□ -0.99
YBX3-208ENST00000540447 ARHGEF15O94989 841 aa8.84□□□□□ -0.99
YBX3-208ENST00000540447 SNX4O95219 450 aa8.84□□□□□ -0.99
YBX3-208ENST00000540447 AP2S1P53680 142 aaPredicted RBP8.84□□□□□ -0.99
YBX3-208ENST00000540447 FGL2Q14314 439 aa8.84□□□□□ -0.99
YBX3-208ENST00000540447 DDX59Q5T1V6 619 aaKnown RBP eCLIP8.84□□□□□ -0.99
YBX3-208ENST00000540447 NT5DC1Q5TFE4 455 aa8.84□□□□□ -0.99
YBX3-208ENST00000540447 PPP1R18Q6NYC8 613 aa8.84□□□□□ -0.99
YBX3-208ENST00000540447 CFAP206Q8IYR0 622 aa8.84□□□□□ -0.99
YBX3-208ENST00000540447 LPCAT1Q8NF37 534 aa8.84□□□□□ -0.99
YBX3-208ENST00000540447 STOML3Q8TAV4 291 aa8.84□□□□□ -0.99
YBX3-208ENST00000540447 SPOCK2Q92563 424 aa8.84□□□□□ -0.99
YBX3-208ENST00000540447 SLC47A1Q96FL8 570 aa8.84□□□□□ -0.99
YBX3-208ENST00000540447 SLC17A7Q9P2U7 560 aa8.84□□□□□ -0.99
YBX3-208ENST00000540447 PCDHGA4Q9Y5G9 962 aa8.84□□□□□ -0.99
YBX3-208ENST00000540447 SMCO3A2RU48 225 aa8.83□□□□□ -1
YBX3-208ENST00000540447 TTC34A8MYJ7 566 aa8.83□□□□□ -1
YBX3-208ENST00000540447 M0R233 179 aa8.83□□□□□ -1
YBX3-208ENST00000540447 IFRD1O00458 451 aaPredicted RBP8.83□□□□□ -1
YBX3-208ENST00000540447 ACSL4O60488 711 aa8.83□□□□□ -1
YBX3-208ENST00000540447 PCCAP05165 728 aaPredicted RBP8.83□□□□□ -1
YBX3-208ENST00000540447 USP17L8P0C7I0 530 aa8.83□□□□□ -1
YBX3-208ENST00000540447 NR2F6P10588 404 aa8.83□□□□□ -1
YBX3-208ENST00000540447 HNRNPFP52597 415 aaKnown RBP8.83□□□□□ -1
YBX3-208ENST00000540447 CDH4P55283 916 aa8.83□□□□□ -1
YBX3-208ENST00000540447 ZNF234Q14588 700 aa8.83□□□□□ -1
YBX3-208ENST00000540447 PUS10Q3MIT2 529 aaKnown RBP8.83□□□□□ -1
YBX3-208ENST00000540447 FAM76BQ5HYJ3 339 aa8.83□□□□□ -1
YBX3-208ENST00000540447 TLDC1Q6P9B6 456 aa8.83□□□□□ -1
YBX3-208ENST00000540447 AHSA2Q719I0 299 aa8.83□□□□□ -1
YBX3-208ENST00000540447 SPPL2CQ8IUH8 684 aa8.83□□□□□ -1
YBX3-208ENST00000540447 SLC34A3Q8N130 599 aa8.83□□□□□ -1
YBX3-208ENST00000540447 ACTL9Q8TC94 416 aa8.83□□□□□ -1
YBX3-208ENST00000540447 TRUB1Q8WWH5 349 aaKnown RBP8.83□□□□□ -1
YBX3-208ENST00000540447 MED30Q96HR3 178 aa8.83□□□□□ -1
YBX3-208ENST00000540447 MECRQ9BV79 373 aa8.83□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms