RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 NPY2RP49146 381 aa21.51■■□□□ 1.03
VPS28-212ENST00000530836 GPX6P59796 221 aa21.51■■□□□ 1.03
VPS28-212ENST00000530836 CDH17Q12864 832 aa21.51■■□□□ 1.03
VPS28-212ENST00000530836 USP4Q13107 963 aa21.51■■□□□ 1.03
VPS28-212ENST00000530836 GRM2Q14416 872 aa21.51■■□□□ 1.03
VPS28-212ENST00000530836 ZNF235Q14590 738 aa21.51■■□□□ 1.03
VPS28-212ENST00000530836 KLHL38Q2WGJ6 581 aa21.51■■□□□ 1.03
VPS28-212ENST00000530836 UBAP2Q5T6F2 1119 aaKnown RBP21.51■■□□□ 1.03
VPS28-212ENST00000530836 ARMC3Q5W041 872 aa21.51■■□□□ 1.03
VPS28-212ENST00000530836 TTC16Q8NEE8 873 aa21.51■■□□□ 1.03
VPS28-212ENST00000530836 IMP4Q96G21 291 aaKnown RBP21.51■■□□□ 1.03
VPS28-212ENST00000530836 OXNAD1Q96HP4 312 aaPredicted RBP21.51■■□□□ 1.03
VPS28-212ENST00000530836 ZNF419Q96HQ0 510 aaPredicted RBP21.51■■□□□ 1.03
VPS28-212ENST00000530836 COL25A1Q9BXS0 654 aaPredicted RBP21.51■■□□□ 1.03
VPS28-212ENST00000530836 POLR1EQ9GZS1 481 aaKnown RBP21.51■■□□□ 1.03
VPS28-212ENST00000530836 NT5MQ9NPB1 228 aa21.51■■□□□ 1.03
VPS28-212ENST00000530836 THG1LQ9NWX6 298 aaKnown RBP21.51■■□□□ 1.03
VPS28-212ENST00000530836 UBA2Q9UBT2 640 aaPredicted RBP21.51■■□□□ 1.03
VPS28-212ENST00000530836 CXorf51AA0A1B0GTR3 108 aa21.51■■□□□ 1.03
VPS28-212ENST00000530836 MAGEB16A2A368 324 aa21.51■■□□□ 1.03
VPS28-212ENST00000530836 RRP9O43818 475 aaKnown RBP21.51■■□□□ 1.03
VPS28-212ENST00000530836 CES1P23141 567 aa21.51■■□□□ 1.03
VPS28-212ENST00000530836 ATP5DP30049 168 aa21.51■■□□□ 1.03
VPS28-212ENST00000530836 STX2P32856 288 aa21.51■■□□□ 1.03
VPS28-212ENST00000530836 SLC12A1Q13621 1099 aa21.51■■□□□ 1.03
VPS28-212ENST00000530836 RASA2Q15283 850 aa21.51■■□□□ 1.03
VPS28-212ENST00000530836 CYS1Q717R9 158 aa21.51■■□□□ 1.03
VPS28-212ENST00000530836 YAF2Q8IY57 180 aa21.51■■□□□ 1.03
VPS28-212ENST00000530836 DNAAF3Q8N9W5 541 aa21.51■■□□□ 1.03
VPS28-212ENST00000530836 OR52K2Q8NGK3 314 aa21.51■■□□□ 1.03
VPS28-212ENST00000530836 ARL8AQ96BM9 186 aa21.51■■□□□ 1.03
VPS28-212ENST00000530836 STAMBPL1Q96FJ0 436 aa21.51■■□□□ 1.03
VPS28-212ENST00000530836 CENPHQ9H3R5 247 aa21.51■■□□□ 1.03
VPS28-212ENST00000530836 DUSP12Q9UNI6 340 aa21.51■■□□□ 1.03
VPS28-212ENST00000530836 MAD1L1Q9Y6D9 718 aa21.51■■□□□ 1.03
VPS28-212ENST00000530836 EXOC1LA0A1B0GW35 172 aa21.5■■□□□ 1.03
VPS28-212ENST00000530836 RGS16O15492 202 aaPredicted RBP21.5■■□□□ 1.03
VPS28-212ENST00000530836 NARSO43776 548 aaKnown RBP21.5■■□□□ 1.03
VPS28-212ENST00000530836 CDH16O75309 829 aa21.5■■□□□ 1.03
VPS28-212ENST00000530836 SRFP11831 508 aa21.5■■□□□ 1.03
VPS28-212ENST00000530836 GDI1P31150 447 aa21.5■■□□□ 1.03
VPS28-212ENST00000530836 GRIA1P42261 906 aa21.5■■□□□ 1.03
VPS28-212ENST00000530836 GEMIN4P57678 1058 aaKnown RBP21.5■■□□□ 1.03
VPS28-212ENST00000530836 ITKQ08881 620 aa21.5■■□□□ 1.03
VPS28-212ENST00000530836 SLC14A2Q15849 920 aa21.5■■□□□ 1.03
VPS28-212ENST00000530836 TTMPQ5BVD1 217 aa21.5■■□□□ 1.03
VPS28-212ENST00000530836 ALG1LQ6GMV1 187 aa21.5■■□□□ 1.03
VPS28-212ENST00000530836 TDRPQ86YL5 185 aa21.5■■□□□ 1.03
VPS28-212ENST00000530836 IGDCC3Q8IVU1 814 aa21.5■■□□□ 1.03
VPS28-212ENST00000530836 UBALD2Q8IYN6 164 aa21.5■■□□□ 1.03
VPS28-212ENST00000530836 FIBINQ8TAL6 211 aa21.5■■□□□ 1.03
VPS28-212ENST00000530836 PSKH2Q96QS6 385 aa21.5■■□□□ 1.03
VPS28-212ENST00000530836 FEM1AQ9BSK4 669 aa21.5■■□□□ 1.03
VPS28-212ENST00000530836 ACSS3Q9H6R3 686 aa21.5■■□□□ 1.03
VPS28-212ENST00000530836 SLC2A4RGQ9NR83 387 aa21.5■■□□□ 1.03
VPS28-212ENST00000530836 KIAA1522Q9P206 1035 aaPredicted RBP21.5■■□□□ 1.03
VPS28-212ENST00000530836 SLC24A2Q9UI40 661 aa21.5■■□□□ 1.03
VPS28-212ENST00000530836 MUC3AQ02505 3323 aa21.5■■□□□ 1.03
VPS28-212ENST00000530836 TLDC2A0PJX2 215 aa21.49■■□□□ 1.03
VPS28-212ENST00000530836 SSTR1P30872 391 aa21.49■■□□□ 1.03
VPS28-212ENST00000530836 CNPY4Q8N129 248 aa21.49■■□□□ 1.03
VPS28-212ENST00000530836 DCAF4L2Q8NA75 395 aa21.49■■□□□ 1.03
VPS28-212ENST00000530836 OR52K1Q8NGK4 314 aa21.49■■□□□ 1.03
VPS28-212ENST00000530836 CYTH2Q99418 400 aa21.49■■□□□ 1.03
VPS28-212ENST00000530836 TBL1YQ9BQ87 522 aa21.49■■□□□ 1.03
VPS28-212ENST00000530836 C2orf49Q9BVC5 232 aaPredicted RBP21.49■■□□□ 1.03
VPS28-212ENST00000530836 FSD1LQ9BXM9 530 aa21.49■■□□□ 1.03
VPS28-212ENST00000530836 IL22Q9GZX6 179 aa21.49■■□□□ 1.03
VPS28-212ENST00000530836 SAMD15Q9P1V8 674 aa21.49■■□□□ 1.03
VPS28-212ENST00000530836 OR51B4Q9Y5P0 310 aa21.49■■□□□ 1.03
VPS28-212ENST00000530836 MYO10Q9HD67 2058 aa21.49■■□□□ 1.03
VPS28-212ENST00000530836 CBX4O00257 560 aa21.48■■□□□ 1.03
VPS28-212ENST00000530836 SCAMP3O14828 347 aaKnown RBP21.48■■□□□ 1.03
VPS28-212ENST00000530836 AGTP01019 485 aa21.48■■□□□ 1.03
VPS28-212ENST00000530836 SESN2P58004 480 aaPredicted RBP21.48■■□□□ 1.03
VPS28-212ENST00000530836 MTM1Q13496 603 aa21.48■■□□□ 1.03
VPS28-212ENST00000530836 SPARCL1Q14515 664 aa21.48■■□□□ 1.03
VPS28-212ENST00000530836 LONRF1Q17RB8 773 aa21.48■■□□□ 1.03
VPS28-212ENST00000530836 INO80DQ53TQ3 878 aaPredicted RBP21.48■■□□□ 1.03
VPS28-212ENST00000530836 FYB2Q5VWT5 728 aa21.48■■□□□ 1.03
VPS28-212ENST00000530836 METTL3Q86U44 580 aaKnown RBP21.48■■□□□ 1.03
VPS28-212ENST00000530836 AGGF1Q8N302 714 aaeCLIP21.48■■□□□ 1.03
VPS28-212ENST00000530836 SPATA22Q8NHS9 363 aa21.48■■□□□ 1.03
VPS28-212ENST00000530836 GSDMBQ8TAX9 411 aa21.48■■□□□ 1.03
VPS28-212ENST00000530836 EPS8L3Q8TE67 593 aaKnown RBP21.48■■□□□ 1.03
VPS28-212ENST00000530836 ACDQ96AP0 544 aa21.48■■□□□ 1.03
VPS28-212ENST00000530836 ZBTB9Q96C00 473 aa21.48■■□□□ 1.03
VPS28-212ENST00000530836 FAM83CQ9BQN1 747 aa21.48■■□□□ 1.03
VPS28-212ENST00000530836 CINPQ9BW66 212 aaPredicted RBP21.48■■□□□ 1.03
VPS28-212ENST00000530836 BRD9Q9H8M2 597 aa21.48■■□□□ 1.03
VPS28-212ENST00000530836 UBP1Q9NZI7 540 aa21.48■■□□□ 1.03
VPS28-212ENST00000530836 VPS18Q9P253 973 aa21.48■■□□□ 1.03
VPS28-212ENST00000530836 RABGEF1Q9UJ41 708 aa21.48■■□□□ 1.03
VPS28-212ENST00000530836 VPS28Q9UK41 221 aa21.48■■□□□ 1.03
VPS28-212ENST00000530836 DCXO43602 365 aa21.47■■□□□ 1.03
VPS28-212ENST00000530836 PGAM1P18669 254 aa21.47■■□□□ 1.03
VPS28-212ENST00000530836 MGAT1P26572 445 aa21.47■■□□□ 1.03
VPS28-212ENST00000530836 ADRA1AP35348 466 aa21.47■■□□□ 1.03
VPS28-212ENST00000530836 ZXDAP98168 799 aa21.47■■□□□ 1.03
VPS28-212ENST00000530836 FSCBQ5H9T9 825 aa21.47■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms