RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 IL36AQ9UHA7 158 aa10.84□□□□□ -0.67
CD44-227ENST00000528086 PCOLCE2Q9UKZ9 415 aa10.84□□□□□ -0.67
CD44-227ENST00000528086 ITM2BQ9Y287 266 aa10.84□□□□□ -0.67
CD44-227ENST00000528086 LUC7L2Q9Y383 392 aaKnown RBP10.84□□□□□ -0.67
CD44-227ENST00000528086 FADS3Q9Y5Q0 445 aa10.84□□□□□ -0.67
CD44-227ENST00000528086 IGF2RP11717 2491 aa10.84□□□□□ -0.67
CD44-227ENST00000528086 A0A1B0GTQ1 180 aa10.83□□□□□ -0.68
CD44-227ENST00000528086 A0A1W2PQU0 124 aa10.83□□□□□ -0.68
CD44-227ENST00000528086 C1QTNF3-AMACRE9PGA6 284 aa10.83□□□□□ -0.68
CD44-227ENST00000528086 GOLGA6L19H0YKK7 550 aa10.83□□□□□ -0.68
CD44-227ENST00000528086 AREL1O15033 823 aa10.83□□□□□ -0.68
CD44-227ENST00000528086 BUB1BO60566 1050 aaPredicted RBP10.83□□□□□ -0.68
CD44-227ENST00000528086 PRAMEF11O60813 436 aa10.83□□□□□ -0.68
CD44-227ENST00000528086 DKK1O94907 266 aa10.83□□□□□ -0.68
CD44-227ENST00000528086 GSRP00390 522 aa10.83□□□□□ -0.68
CD44-227ENST00000528086 PRNPP04156 253 aa10.83□□□□□ -0.68
CD44-227ENST00000528086 CD48P09326 243 aa10.83□□□□□ -0.68
CD44-227ENST00000528086 MYBL1P10243 752 aa10.83□□□□□ -0.68
CD44-227ENST00000528086 RARAP10276 462 aa10.83□□□□□ -0.68
CD44-227ENST00000528086 ERCC2P18074 760 aa10.83□□□□□ -0.68
CD44-227ENST00000528086 PTMSP20962 102 aa10.83□□□□□ -0.68
CD44-227ENST00000528086 AMPD1P23109 780 aa10.83□□□□□ -0.68
CD44-227ENST00000528086 ITGB7P26010 798 aa10.83□□□□□ -0.68
CD44-227ENST00000528086 PCK1P35558 622 aa10.83□□□□□ -0.68
CD44-227ENST00000528086 PAPOLAP51003 745 aaKnown RBP10.83□□□□□ -0.68
CD44-227ENST00000528086 DNA2P51530 1060 aa10.83□□□□□ -0.68
CD44-227ENST00000528086 NXPH1P58417 271 aa10.83□□□□□ -0.68
CD44-227ENST00000528086 YBEYP58557 167 aaPredicted RBP10.83□□□□□ -0.68
CD44-227ENST00000528086 TPI1P60174 286 aa10.83□□□□□ -0.68
CD44-227ENST00000528086 IL9RQ01113 521 aa10.83□□□□□ -0.68
CD44-227ENST00000528086 SLC14A1Q13336 389 aa10.83□□□□□ -0.68
CD44-227ENST00000528086 IHHQ14623 411 aa10.83□□□□□ -0.68
CD44-227ENST00000528086 DPYSL2Q16555 572 aa10.83□□□□□ -0.68
CD44-227ENST00000528086 SMTNL2Q2TAL5 461 aa10.83□□□□□ -0.68
CD44-227ENST00000528086 MYLK3Q32MK0 819 aa10.83□□□□□ -0.68
CD44-227ENST00000528086 TDRD12Q587J7 1177 aaKnown RBP10.83□□□□□ -0.68
CD44-227ENST00000528086 LRRC73Q5JTD7 316 aa10.83□□□□□ -0.68
CD44-227ENST00000528086 TPRG1LQ5T0D9 272 aa10.83□□□□□ -0.68
CD44-227ENST00000528086 PPP1R2P3Q6NXS1 205 aa10.83□□□□□ -0.68
CD44-227ENST00000528086 ALKBH5Q6P6C2 394 aaKnown RBP10.83□□□□□ -0.68
CD44-227ENST00000528086 RFX8Q6ZV50 586 aa10.83□□□□□ -0.68
CD44-227ENST00000528086 POLNQ7Z5Q5 900 aa10.83□□□□□ -0.68
CD44-227ENST00000528086 DSG4Q86SJ6 1040 aa10.83□□□□□ -0.68
CD44-227ENST00000528086 NAXDQ8IW45 347 aa10.83□□□□□ -0.68
CD44-227ENST00000528086 FAM71BQ8TC56 605 aa10.83□□□□□ -0.68
CD44-227ENST00000528086 SERAC1Q96JX3 654 aa10.83□□□□□ -0.68
CD44-227ENST00000528086 EXOC2Q96KP1 924 aa10.83□□□□□ -0.68
CD44-227ENST00000528086 BMFQ96LC9 184 aa10.83□□□□□ -0.68
CD44-227ENST00000528086 KLF6Q99612 283 aaPredicted RBP10.83□□□□□ -0.68
CD44-227ENST00000528086 EPAS1Q99814 870 aa10.83□□□□□ -0.68
CD44-227ENST00000528086 GPR27Q9NS67 375 aa10.83□□□□□ -0.68
CD44-227ENST00000528086 COL5A1P20908 1838 aaPredicted RBP10.83□□□□□ -0.68
CD44-227ENST00000528086 C16orf96A6NNT2 1141 aa10.82□□□□□ -0.68
CD44-227ENST00000528086 EEF2KO00418 725 aaKnown RBP10.82□□□□□ -0.68
CD44-227ENST00000528086 SLC31A1O15431 190 aa10.82□□□□□ -0.68
CD44-227ENST00000528086 FGF10O15520 208 aaPredicted RBP10.82□□□□□ -0.68
CD44-227ENST00000528086 BUB1O43683 1085 aa10.82□□□□□ -0.68
CD44-227ENST00000528086 ADRB3P13945 408 aa10.82□□□□□ -0.68
CD44-227ENST00000528086 TIMP2P16035 220 aa10.82□□□□□ -0.68
CD44-227ENST00000528086 CD38P28907 300 aa10.82□□□□□ -0.68
CD44-227ENST00000528086 HCAR3P49019 387 aa10.82□□□□□ -0.68
CD44-227ENST00000528086 ATXN3P54252 364 aaPredicted RBP10.82□□□□□ -0.68
CD44-227ENST00000528086 ADKP55263 362 aaKnown RBP10.82□□□□□ -0.68
CD44-227ENST00000528086 CLDN2P57739 230 aa10.82□□□□□ -0.68
CD44-227ENST00000528086 TAS2R40P59535 323 aa10.82□□□□□ -0.68
CD44-227ENST00000528086 SIM1P81133 766 aaPredicted RBP10.82□□□□□ -0.68
CD44-227ENST00000528086 MMRN1Q13201 1228 aa10.82□□□□□ -0.68
CD44-227ENST00000528086 PARP15Q460N3 678 aa10.82□□□□□ -0.68
CD44-227ENST00000528086 INO80DQ53TQ3 878 aaPredicted RBP10.82□□□□□ -0.68
CD44-227ENST00000528086 CCDC122Q5T0U0 273 aa10.82□□□□□ -0.68
CD44-227ENST00000528086 SPECC1LQ69YQ0 1117 aa10.82□□□□□ -0.68
CD44-227ENST00000528086 NAPEPLDQ6IQ20 393 aa10.82□□□□□ -0.68
CD44-227ENST00000528086 GCNT7Q6ZNI0 430 aa10.82□□□□□ -0.68
CD44-227ENST00000528086 GLRX5Q86SX6 157 aa10.82□□□□□ -0.68
CD44-227ENST00000528086 HORMAD1Q86X24 394 aa10.82□□□□□ -0.68
CD44-227ENST00000528086 GATAD2AQ86YP4 633 aa10.82□□□□□ -0.68
CD44-227ENST00000528086 SLC22A18ASQ8N1D0 253 aa10.82□□□□□ -0.68
CD44-227ENST00000528086 PNPLA1Q8N8W4 532 aa10.82□□□□□ -0.68
CD44-227ENST00000528086 OR2AP1Q8NGE2 309 aa10.82□□□□□ -0.68
CD44-227ENST00000528086 SAP25Q8TEE9 199 aa10.82□□□□□ -0.68
CD44-227ENST00000528086 MYOCQ99972 504 aa10.82□□□□□ -0.68
CD44-227ENST00000528086 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP10.82□□□□□ -0.68
CD44-227ENST00000528086 NUP85Q9BW27 656 aa10.82□□□□□ -0.68
CD44-227ENST00000528086 ZDHHC6Q9H6R6 413 aa10.82□□□□□ -0.68
CD44-227ENST00000528086 PREBQ9HCU5 417 aa10.82□□□□□ -0.68
CD44-227ENST00000528086 PCDHGB2Q9Y5G2 931 aa10.82□□□□□ -0.68
CD44-227ENST00000528086 BZW2Q9Y6E2 419 aaKnown RBP10.82□□□□□ -0.68
CD44-227ENST00000528086 SCINQ9Y6U3 715 aa10.82□□□□□ -0.68
CD44-227ENST00000528086 GOLGA4Q13439 2230 aaKnown RBP10.81□□□□□ -0.68
CD44-227ENST00000528086 ANKRD62A6NC57 917 aa10.81□□□□□ -0.68
CD44-227ENST00000528086 POM121BA6NF01 834 aa10.81□□□□□ -0.68
CD44-227ENST00000528086 TLR4O00206 839 aa10.81□□□□□ -0.68
CD44-227ENST00000528086 PRPSAP2O60256 369 aa10.81□□□□□ -0.68
CD44-227ENST00000528086 PCDHGA12O60330 932 aa10.81□□□□□ -0.68
CD44-227ENST00000528086 PIGNO95427 931 aa10.81□□□□□ -0.68
CD44-227ENST00000528086 CER1O95813 267 aa10.81□□□□□ -0.68
CD44-227ENST00000528086 CAPNS1P04632 268 aa10.81□□□□□ -0.68
CD44-227ENST00000528086 UGT2B4P06133 528 aa10.81□□□□□ -0.68
CD44-227ENST00000528086 ATXN1LP0C7T5 689 aaKnown RBP10.81□□□□□ -0.68
CD44-227ENST00000528086 GIMD1P0DJR0 217 aa10.81□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms